Fine-scale mapping of physicochemical and microbial landscapes of the coral skeleton

The coral skeleton harbours a diverse community of bacteria and microeukaryotes exposed to light, O₂ and pH gradients, but how such physicochemical gradients affect the coral skeleton microbiome remains unclear. In this study, we employed chemical imaging of O₂ and pH, hyperspectral reflectance imaging and spatially resolved taxonomic and inferred functional microbiome characterization to explore links between the skeleton microenvironment and microbiome in the reef-building corals Porites lutea and Paragoniastrea benhami. The physicochemical environment was more stable in the deep skeleton, and the diversity and evenness of the bacterial community increased with skeletal depth, suggesting that the microbiome was stratified along the physicochemical gradients. The bulk of the coral skeleton was in a low O₂ habitat, whereas pH varied from pH 6–9 with depth. Physicochemical gradients of O₂ and pH of the coral skeleton explained the β-diversity of the bacterial communities, and skeletal layers that showed O₂ peaks had a higher relative abundance of endolithic algae, reflecting a link between the abiotic environment and the microbiome composition. Our study links the physicochemical, microbial and functional landscapes of the coral skeleton and provides new insights into the involvement of skeletal microbes in the coral holobiont metabolism.     

Cold-induced Chromosome Regions and Karyosystematics in Sambucus and Viburnum

The genera Viburnum, Sambucus and Lonicera have been investigated for chromosome number and karyomorphology including Giemsa-C-banding, fluorochrome (DAPI/CMA) banding and cold treatment. Cold-induced undercontracted chromosome regions (CIRs) are found in Viburnum and Sambucus for the first time and are apparently identical with larger hc regions, shown by Giemsa C-banding. Certain narrow C-bands are not cold-sensitive. CIRs frequently react brightly CMA-positive in Viburnum and Sambucus, while DAPI fluorescence is virtually ineffective. The occurrence of CIRs within plants is possibly linked to certain nuclear characters such as large chromosomes and continuous condensation behaviour. Cold-induction has possibly also some influence on euchromatin condensation characteristics in prophasic chromosomes. Several karyological characters point to a closer relationship between Viburnum, Sambucus and Adoxa: Relatively large chromosomes, continuous condensation behaviour, reticulate to semireticulate interphase nuclei and presence of CIRs. These genera appear isolated from Lonicera and the Caprifoliaceae s.str., which differ remarkably in karyomorphology.     

Coexisting mangrove-coral habitat use by reef fishes in the Caribbean

We conducted visual fish surveys in coexisting mangrove-coral (CMC) habitats in Panama to analyze the effect of coral presence in mangrove habitats on the fish assemblage. Our study revealed that CMC habitats harbor distinct fish assemblages compared to mangrove habitats without coral, with greater species richness and increased herbivore abundance. Abstract in Spanish is available with online material.     

Thelocarpon cyaneum sp. nov.

Thelocarpon cyaneum, a new lichenicolous fungus on Polyblastia, is described from Antarctica.     

Feeding ecology of the Common Tern Sterna hirundo in a wintering area in southern Brazil

The wintering diet of Common Terns Sterna hirundo was studied by using 714 pellets collected on roosting sites at the mouth of the Lagoa dos Patos and on adjacent coastal beaches, in Rio Grande do Sul, southern Brazil, from March 1999 to February 2000. A total of 12 340 individual prey items of 35 different food types was found. Fish was the most important food type in the diet, constituting 32% by number and 93% by mass. Insects contributed 67% by number but only 3% by mass. The main food types were sciaenid fishes Paralonchurus brasiliensis, Micropogonias furnieri, Cynoscion guatucupa and Macrodon ancylodon. Several of these are important commercial species; fisheries potentially impact food availability to the terns, and terns may contribute significantly to the natural mortality of these fishes. Clupeiform fishes, the urophycid fish Urophycis brasiliensis and flying ants (Camponotus sp.) were also important. Species composition of the diet (food types), both by number and by mass, differed significantly between months. Prey sizes ranged in length from 12.7 mm to 217.4 mm. The average estimated total length of fish taken was 77.7 mm, but the mean differed significantly among prey species. The importance of demersal sciaenids to the diet of the Common Tern, a surface predator, may be explained by their association with aquatic predators, especially adult Bluefish Pomatomus saltatrix and Striped Weakfish Cynoscion guatucupa, and the Franciscana Dolphin Pontoporia blainvillei, which drive these fish to the surface. The occurrence of flying ants in the diet was related to offshore winds, which carried these insects out to sea. The occasional high availability of insects possibly changed the cost/benefit relationship of several food types, causing diet changes. The high number of prey species, the temporal variations in the composition of the diet and the wide range of prey sizes are evidence of the high dietary plasticity of the Common Tern, at wintering areas in southern Brazil.     

Through-bond correlation of adenine H2 and H8 protons in unlabeled DNA fragments by HMBC spectroscopy

Summary A new application of the HMBC experiment is presented that provides a useful means to discriminate between H2 and H8 proton resonances, to assign the base proton resonances to the various residue types and, most importantly, to correlate the H2 and H8 protons for adenine or inosine residues in natural abundance ¹³C fragments. The utility of this experiment is demonstrated for an unlabeled DNA 20-mer. Thanks to the obtained results, preliminary conclusions could be drawn regarding the molecular conformations of the non-canonical G/I-A base pairs in the hairpin formed by this fragment.