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942.
Richard Atherton Darlene Bhavnani Manuel Calvopi?a Yosselin Vicu?a William Cevallos Joseph Eisenberg 《Memórias do Instituto Oswaldo Cruz》2013,108(4):512-515
The aim of this study was to determine the genetic diversity of
Giardia duodenalis present in a human population living in
a northern Ecuadorian rain forest. All Giardia positive samples
(based on an ELISA assay) were analysed using a semi-nested polymerase chain
reaction-restriction fragment length polymorphism assay that targets the
glutamate dehydrogenase (gdh) gene; those amplified were
subsequently genotyped using NlaIV and RsaI enzymes. The gdh
gene was successfully amplified in 74 of 154 ELISA positive samples; 69 of the
74 samples were subsequently genotyped. Of these 69 samples, 42 (61%) were
classified as assemblage B (26 as BIII and 16 as BIV), 22 (32%) as assemblage A
(3 as AI and 19 as AII) and five (7%) as mixed AII and BIII types. In this study
site we observe similar diversity in genotypes to other regions in Latin
America, though in contrast to some previous studies, we found similar levels of
diarrheal symptoms in those individuals infected with assemblage B compared with
those infected with assemblage A. 相似文献
943.
Donna S. Francy Erin A. Stelzer Joseph W. Duris Amie M. G. Brady John H. Harrison Heather E. Johnson Michael W. Ware 《Applied and environmental microbiology》2013,79(5):1676-1688
Predictive models, based on environmental and water quality variables, have been used to improve the timeliness and accuracy of recreational water quality assessments, but their effectiveness has not been studied in inland waters. Sampling at eight inland recreational lakes in Ohio was done in order to investigate using predictive models for Escherichia coli and to understand the links between E. coli concentrations, predictive variables, and pathogens. Based upon results from 21 beach sites, models were developed for 13 sites, and the most predictive variables were rainfall, wind direction and speed, turbidity, and water temperature. Models were not developed at sites where the E. coli standard was seldom exceeded. Models were validated at nine sites during an independent year. At three sites, the model resulted in increased correct responses, sensitivities, and specificities compared to use of the previous day''s E. coli concentration (the current method). Drought conditions during the validation year precluded being able to adequately assess model performance at most of the other sites. Cryptosporidium, adenovirus, eaeA (E. coli), ipaH (Shigella), and spvC (Salmonella) were found in at least 20% of samples collected for pathogens at five sites. The presence or absence of the three bacterial genes was related to some of the model variables but was not consistently related to E. coli concentrations. Predictive models were not effective at all inland lake sites; however, their use at two lakes with high swimmer densities will provide better estimates of public health risk than current methods and will be a valuable resource for beach managers and the public. 相似文献
944.
Jessica Laskowski Caitlyn Gillespie Lucia Corral Amy Oden Kent Fricke Joseph J. Fontaine 《Science activities》2013,50(4):147-154
We present a hands-on outdoor activity coupled with classroom discussion to teach students about wildlife habitat selection, the process by which animals choose where to live. By selecting locations or habitats with many benefits (e.g., food, shelter, mates) and few costs (e.g., predators), animals improve their ability to survive and reproduce. Biologists track animal movement using radio telemetry technology to study habitat selection so they can better provide species with habitats that promote population growth. We present a curriculum in which students locate “animals” (transmitters) using radio telemetry equipment and apply math skills (use of fractions and percentages) to assess their “animal's” habitat selection by comparing the availability of habitat types with the proportion of “animals” they find in each habitat type. 相似文献
945.
Amir Sherman Ravit Eshed Rotem Harel-Beja Galil Tzuri Vitaly Portnoy Shahar Cohen Mor Rubinstein Arthur A. Schaffer Joseph Burger Nurit Katzir Ron Ophir 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2013,126(2):349-358
The availability of sequence information for many plants has opened the way to advanced genetic analysis in many non-model plants. Nevertheless, exploration of genetic variation on a large scale and its use as a tool for the identification of traits of interest are still rare. In this study, we combined a bulk segregation approach with our own-designed microarrays to map the pH locus that influences fruit pH in melon. Using these technologies, we identified a set of markers that are genetically linked to the pH trait. Further analysis using a set of melon cultivars demonstrated that some of these markers are tightly linked to the pH trait throughout our germplasm collection. These results validate the utility of combining microarray technology with a bulk segregation approach in mapping traits of interest in non-model plants. 相似文献
946.
947.
Felix Willmund Marta del Alamo Sebastian Pechmann Taotao Chen Véronique Albanèse Eric B. Dammer Junmin Peng Judith Frydman 《Cell》2013,152(1-2):196-209
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948.
Carmen Bednorz Sebastian Guenther Kathrin Oelgeschl?ger Bianca Kinnemann Robert Pieper Susanne Hartmann Karsten Tedin Torsten Semmler Konrad Neumann Peter Schierack Astrid Bethe Lothar H. Wieler 《Applied and environmental microbiology》2013,79(24):7896-7904
Feed supplementation with the probiotic Enterococcus faecium for piglets has been found to reduce pathogenic gut microorganisms. Since Escherichia coli is among the most important pathogens in pig production, we performed comprehensive analyses to gain further insight into the influence of E. faecium NCIMB 10415 on porcine intestinal E. coli. A total of 1,436 E. coli strains were isolated from three intestinal habitats (mucosa, digesta, and feces) of probiotic-supplemented and nonsupplemented (control) piglets. E. coli bacteria were characterized via pulsed-field gel electrophoresis (PFGE) for clonal analysis. The high diversity of E. coli was reflected by 168 clones. Multilocus sequence typing (MLST) was used to determine the phylogenetic backgrounds, revealing 79 sequence types (STs). Pathotypes of E. coli were further defined using multiplex PCR for virulence-associated genes. While these analyses discerned only a few significant differences in the E. coli population between the feeding groups, analyses distinguishing clones that were uniquely isolated in either the probiotic group only, the control group only, or both groups (shared group) revealed clear effects at the habitat level. Interestingly, extraintestinal pathogenic E. coli (ExPEC)-typical clones adhering to the mucosa were significantly reduced in the probiotic group. Our data show a minor influence of E. faecium on the overall population of E. coli in healthy piglets. In contrast, this probiotic has a profound effect on mucosa-adherent E. coli. This finding further substantiates a specific effect of E. faecium strain NCIMB 10415 in piglets against pathogenic E. coli in the intestine. In addition, these data question the relevance of data based on sampling fecal E. coli only. 相似文献
949.
Nadine Flinner Lars Ellenrieder Sebastian B. Stiller Thomas Becker Enrico Schleiff Oliver Mirus 《Biochimica et Biophysica Acta (BBA)/Molecular Cell Research》2013,1833(12):3314-3325
Mitochondrial β-barrel proteins fulfill central functions in the outer membrane like metabolite exchange catalyzed by the voltage-dependent anion channel (VDAC) and protein biogenesis by the central components of the preprotein translocase of the outer membrane (Tom40) or of the sorting and assembly machinery (Sam50). The mitochondrial division and morphology protein Mdm10 is another essential outer membrane protein with proposed β-barrel fold, which has so far only been found in Fungi. Mdm10 is part of the endoplasmic reticulum mitochondria encounter structure (ERMES), which tethers the ER to mitochondria and associates with the SAM complex. In here, we provide evidence that Mdm10 phylogenetically belongs to the VDAC/Tom40 superfamily. Contrary to Tom40 and VDAC, Mdm10 exposes long loops towards both sides of the membrane. Analyses of single loop deletion mutants of Mdm10 in the yeast Saccharomyces cerevisiae reveal that the loops are dispensable for Mdm10 function. Sequences similar to fungal Mdm10 can be found in species from Excavates to Fungi, but neither in Metazoa nor in plants. Strikingly, the presence of Mdm10 coincides with the appearance of the other ERMES components. Mdm10's presence in both unikonts and bikonts indicates an introduction at an early time point in eukaryotic evolution. 相似文献
950.
Chad D. Edwards Joseph C. Beatty Jacqueline B. R. Loiselle Katya A. Vlassov Daniel D. Lefebvre 《Applied microbiology and biotechnology》2013,97(8):3613-3623
Industrial activity over the last two centuries has increased heavy metal contamination worldwide, leading to greater human exposure. Zinc is particularly common in industrial effluents and although an essential nutrient, it is highly toxic at elevated concentrations. Photoautotrophic microbes hold promise for heavy metal bioremediation applications because of their ease of culture and their ability to produce sulfide through metabolic processes that in turn are known to complex with the metal ion, Hg(II). The green alga Chlamydomonas reinhardtii, the red alga Cyanidioschyzon merolae, and the cyanobacterium Synechococcus leopoliensis were all able to synthesize sulfide and form zinc sulfide when exposed to Zn(II). Supplementation of their respective media with sulfite and cysteine had deleterious effects on growth, although ZnS still formed in Cyanidioschyzon cells to the same extent as in unsupplemented cells. The simultaneous addition of sulfate and Zn(II) had similar effects to that of Zn(II) alone in all three species, whereas supplying sulfate prior to exposure to Zn(II) enhanced metal sulfide production. The coupled activities of serine acetyltransferase and O-acetylserine(thiol)lyase (SAT/OASTL) did not increase significantly in response to conditions in which enhanced ZnS formation occurred; sulfate added prior to and simultaneously with Zn(II). However, even low activity could provide sufficient sulfate assimilation over this relatively long-term study. Because the extractable activity of cysteine desulfhydrase was elevated in cells that produced higher amounts of zinc sulfide, cysteine is the probable source of the sulfide in this aerobic process. 相似文献