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941.
Accounting for the nested nature of genetic variation across levels of organization improves our understanding of biodiversity and community ecology
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Quentin D. Read Sean M. Hoban Maarten B. Eppinga Jennifer A. Schweitzer Joseph K. Bailey 《Oikos》2016,125(7):895-904
Recent work has demonstrated that the presence or abundance of specific genotypes, populations, species and phylogenetic clades may influence community and ecosystem properties such as resilience or productivity. Many ecological studies, however, use simple linear models to test for such relationships, including species identity as the predictor variable and some measured trait or function as the response variable without accounting for the nestedness of genetic variation across levels of organization. This omission may lead to incorrect inference about which source of variation influences community and ecosystem properties. Here, we explicitly compare this common approach to alternative ways of modeling variation in trait data, using simulated trait data and empirical results of common‐garden trials using multiple levels of genetic variation within Eucalyptus, Populus and Picea. We show that: 1) when nested variation is ignored, an incorrect conclusion of species effect is drawn in up to 20% of cases; 2) overestimation of the species effect increases – up to 60% in some scenarios – as the nested term explains more of the variation; and 3) the sample sizes needed to overcome these potential problems associated with aggregating nested hierarchical variation may be impractically large. In common‐garden trials, incorporating nested models increased explanatory power twofold for mammal browsing rate in Eucalyptus, threefold for leaf area in Populus, and tenfold for branch number in Picea. Thoroughly measuring intraspecific variation and characterizing hierarchical genetic variation beyond the species level has implications for developing more robust theory in community ecology, managing invaded natural systems, and improving inference in biodiversity–ecosystem functioning research. Synthesis Until recently, ecologists acknowledged the ubiquity of within‐species trait variation, but paid scant attention to how much it affects communities and ecosystems. Here, the authors used simulated trait data and common‐garden studies to demonstrate that we ignore intraspecific trait variation at our peril. In both simulated and experimental systems, in many cases ignoring intraspecific variation led to incorrect statistical inferences and inflated the effect size of species identity. This study shows that ecologists must characterize hierarchically nested genetic and phenotypic variation to fully understand the links between individual traits, community structure and ecosystem functioning. 相似文献
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944.
Sridharan Jeyamohan Rajesh Kannan Moorthy Mahesh Kumar Kannan Antony Joseph Velanganni Arockiam 《Biotechnology letters》2016,38(8):1251-1260
Objective
To investigate the effect of parthenolide on apoptosis and autophagy and to study the role of the PI3K/Akt signaling pathway in cervical cancer.Results
Parthenolide inhibits HeLa cell viability in a dose dependent-manner and was confirmed by MTT assay. Parthenolide (6 µM) induces mitochondrial-mediated apoptosis and autophagy by activation of caspase-3, upregulation of Bax, Beclin-1, ATG5, ATG3 and down-regulation of Bcl-2 and mTOR. Parthenolide also inhibits PI3K and Akt expression through activation of PTEN expression. Moreover, parthenolide induces generation of reactive oxygen species that leads to the loss of mitochondrial membrane potential.Conclusion
Parthenolide induces apoptosis and autophagy-mediated growth inhibition in HeLa cells by suppressing the PI3K/Akt signaling pathway and mitochondrial membrane depolarization and ROS generation. Parthenolide may be a potential therapeutic agent for the treatment of cervical cancer.945.
946.
Life Inside an Acorn: How Microclimate and Microbes Influence Nest Organization in Temnothorax Ants
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Joseph Karlik Mary Jane Epps Robert R. Dunn Clint A. Penick 《Ethology : formerly Zeitschrift fur Tierpsychologie》2016,122(10):790-797
Nests provide a buffer against environmental variation, but conditions may also vary at different locations within a nest. Conditions can vary based on abiotic factors, such as moisture and temperature, as well as biotic factors, such as the presence of microbes and potential pathogens. Therefore, characterizing how animals adjust their position inside their nests to track microclimate preferences while at the same time preventing pathogen exposure is necessary to understand the benefits nests provide. Here we studied how colonies of the acorn‐nesting ant Temnothorax curvispinosus responded to experimental manipulation of moisture, temperature, and microbial growth inside their nests. Colonies showed no response to differences in moisture and moved to the bottom of the acorn regardless of moisture treatment. When nests were heated from the top to simulate warming by the sun, workers preferentially moved brood to the warm, upper half of the acorn, which would stimulate brood development. Finally, the strongest factor that influenced colony position was the presence of microbes inside the nest—colonies avoided the bottom of the nest when it was inoculated with microbes, and colonies in new acorns shifted to the top of the acorn over time as mold and other microbes had time to grow. The relatively strong response of T. curvispinosus to microbial growth inside their nests suggests that pathogen pressures—in addition to microclimate—have a significant impact on how colonies use nest spaces. Social insects are known to invest heavily in antimicrobial compounds that kill or slow the growth of microbes, but avoidance may represent an additional line of defense to prevent pathogen exposure. 相似文献
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Chitong Rao Cyril Guyard Carmen Pelaz Jessica Wasserscheid Joseph Bondy‐Denomy Ken Dewar Alexander W. Ensminger 《Cellular microbiology》2016,18(10):1319-1338
Clustered regularly interspaced short palindromic repeats with CRISPR‐associated gene (CRISPR‐Cas) systems are widely recognized as critical genome defense systems that protect microbes from external threats such as bacteriophage infection. Several isolates of the intracellular pathogen Legionella pneumophila possess multiple CRISPR‐Cas systems (type I‐C, type I‐F and type II‐B), yet the targets of these systems remain unknown. With the recent observation that at least one of these systems (II‐B) plays a non‐canonical role in supporting intracellular replication, the possibility remained that these systems are vestigial genome defense systems co‐opted for other purposes. Our data indicate that this is not the case. Using an established plasmid transformation assay, we demonstrate that type I‐C, I‐F and II‐B CRISPR‐Cas provide protection against spacer targets. We observe efficient laboratory acquisition of new spacers under ‘priming’ conditions, in which initially incomplete target elimination leads to the generation of new spacers and ultimate loss of the invasive DNA. Critically, we identify the first known target of L. pneumophila CRISPR‐Cas: a 30 kb episome of unknown function whose interbacterial transfer is guarded against by CRISPR‐Cas. We provide evidence that the element can subvert CRISPR‐Cas by mutating its targeted sequences – but that primed spacer acquisition may limit this mechanism of escape. Rather than generally impinging on bacterial fitness, this element drives a host specialization event – with improved fitness in Acanthamoeba but a reduced ability to replicate in other hosts and conditions. These observations add to a growing body of evidence that host range restriction can serve as an existential threat to L. pneumophila in the wild. 相似文献
949.
Longhua Liu Louise D. Zheng Peng Zou Joseph Brooke Cayleen Smith Yun Chau Long 《Cell cycle (Georgetown, Tex.)》2016,15(15):2033-2041
Obesity and related metabolic disorders constitute one of the most pressing heath concerns worldwide. Increased adiposity is linked to autophagy upregulation in adipose tissues. However, it is unknown how autophagy is upregulated and contributes to aberrant adiposity. Here we show a FoxO1-autophagy-FSP27 axis that regulates adipogenesis and lipid droplet (LD) growth in adipocytes. Adipocyte differentiation was associated with upregulation of autophagy and fat specific protein 27 (FSP27), a key regulator of adipocyte maturation and expansion by promoting LD formation and growth. However, FoxO1 specific inhibitor AS1842856 potently suppressed autophagy, FSP27 expression, and adipocyte differentiation. In terminally differentiated adipocytes, AS1842856 significantly reduced FSP27 level and LD size, which was recapitulated by autophagy inhibitors (bafilomycin-A1 and leupeptin, BL). Similarly, AS1842856 and BL dampened autophagy activity and FSP27 expression in explant cultures of white adipose tissue. To our knowledge, this is the first study addressing FoxO1 in the regulation of adipose autophagy, shedding light on the mechanism of increased autophagy and adiposity in obese individuals. Given that adipogenesis and adipocyte expansion contribute to aberrant adiposity, targeting the FoxO1-autophagy-FSP27 axis may lead to new anti-obesity options. 相似文献
950.
Kezia R. Manlove Josephine G. Walker Meggan E. Craft Kathryn P. Huyvaert Maxwell B. Joseph Ryan S. Miller Pauline Nol Kelly A. Patyk Daniel O’Brien Daniel P. Walsh Paul C. Cross 《PLoS biology》2016,14(4)
The One Health initiative is a global effort fostering interdisciplinary collaborations to address challenges in human, animal, and environmental health. While One Health has received considerable press, its benefits remain unclear because its effects have not been quantitatively described. We systematically surveyed the published literature and used social network analysis to measure interdisciplinarity in One Health studies constructing dynamic pathogen transmission models. The number of publications fulfilling our search criteria increased by 14.6% per year, which is faster than growth rates for life sciences as a whole and for most biology subdisciplines. Surveyed publications clustered into three communities: one used by ecologists, one used by veterinarians, and a third diverse-authorship community used by population biologists, mathematicians, epidemiologists, and experts in human health. Overlap between these communities increased through time in terms of author number, diversity of co-author affiliations, and diversity of citations. However, communities continue to differ in the systems studied, questions asked, and methods employed. While the infectious disease research community has made significant progress toward integrating its participating disciplines, some segregation—especially along the veterinary/ecological research interface—remains. 相似文献