Trace Elements Associated with Systemic Lupus Erythematosus and Insulin Resistance

Biological Trace Element Research - Systemic lupus erythematosus (SLE) is a chronic inflammatory autoimmune disease of multifactorial origin. Studies have shown that trace elements such as zinc and...     

Functions of carotenoids in xanthorhodopsin and archaerhodopsin, from action spectra of photoinhibition of cell respiration

The recent discovery of a carotenoid light-harvesting antenna in xanthorhodopsin, a retinal-based proton pump in Salinibacter ruber, made use of photoinhibition of respiration in whole cells to obtain action spectra [Balashov et al. Science 309, (2005) 2061-2064]. Here we provide further details of this phenomenon, and compare action spectra in three different systems where carotenoids have different functions or efficiencies of light-harvesting. The kinetics of light-induced inhibition of respiration in Salinibacter ruber was determined with single short flashes, and the photochemical cross section of the photoreaction was estimated. These measurements confirm that the xanthorhodopsin complex includes no more than a few, and most likely only one, carotenoid molecule, which is far less than the core complex antenna of photosynthetic bacteria. Although the total cross-section of light absorption in the purple bacterium Rhodospirillum rubrum greatly exceeds that in Salinibacter, the cross-sections are roughly equivalent in the shared wavelength range. We show further that despite interaction of bacterioruberin with archaerhodopsin, another retinal-based proton pump, there is no significant energy transfer from this carotenoid. This emphasizes the uniqueness of the salinixanthin-retinal interaction in xanthorhodopsin, and indicates that bacterioruberin in Halorubrum species has a structural or photoprotective rather than energetic role.     

Unifying generative and discriminative learning principles

Background  

The recognition of functional binding sites in genomic DNA remains one of the fundamental challenges of genome research. During the last decades, a plethora of different and well-adapted models has been developed, but only little attention has been payed to the development of different and similarly well-adapted learning principles. Only recently it was noticed that discriminative learning principles can be superior over generative ones in diverse bioinformatics applications, too.     

Effects of different abiotic and biotic factors on spatial primary seed dispersal in the semachorous species Scrophularia canina

Seed dispersal is one of the most important steps in the plant life cycle. However, there is, generally, a lack of fieldworks focused on wind dispersal and especially on semachorous dispersal (seeds spread when the fruits are shaken by wind and other vectors, such as animals), including boleochorous dispersal. Therefore, we aimed to determine how different types of wind and animals affected seed dispersal under natural conditions in the widespread species Scrophularia canina. We evaluated the effects of wind gusts (simulating them using a leaf blower) and wild animals (using differently sized dogs) on seed dispersal in a population located in south-western Europe. We found that S. canina is a semachorous species, and its spatial seed dispersal was affected by wind gust speed and direction, plant structure and vector type. The results also revealed the presence of xerochasy, individual anisotropy with strong winds, and primary short-distance dispersal associated with successional processes independent of the vector. Additionally, there was a masking effect of plant structure on the seed shadow outline. It is essential to conduct fieldworks to reveal what actually happens in nature, taking into account the characteristics determining seed dispersal. In addition, in these works it is important to find out what factors affect seed distributions of anemochorous and semachorous species.