Plectroninia celtica n. sp. (Calcarea, Minchinellidae), a new species of “pharetronid” sponge from bathyal depths in the northern Porcupine Seabight, NE Atlantic

Recent pharetronid sponges were regarded as relict species in tropical and subtropical waters, inhabiting cryptic habitats on coral reefs and in caves. More recent findings of a new species of the genus Plectroninia off northern Norway, with an inner fused skeleton have changed that view. Recent investigations on the sponge fauna of the “Propeller Mound”, northern Porcupine Seabight, focusing on sponges growing on the azooxanthellate cold-water coral Lophelia pertusa (Linné 1758) and Madrepora oculata Linné 1758, established the presence of a species of Plectroninia new to science. Its status as a common species within this deep-water coral habitat and the general status of the genus Plectroninia are discussed.     

Historical Ecology on Sandoy, Faroe Islands: Palaeoenvironmental and Archaeological Perspectives

We present palaeoenvironmental, geomorphological, archaeological, and place-name data which allow a holistic assessment of the history of landscape change on Sandoy, Faroe Islands, especially in terms of the changes that occurred in response to the colonization of the island by humans. In contrast to other situations in the North Atlantic region, there is considerable continuity in the patterns and processes of landscape evolution across the initial settlement horizon. Many of the characteristic features of post-settlement North Atlantic landscapes—absence of trees, widespread blanket mires, high rates of soil erosion—were already in place when the first people arrived. Although human impact on Sandoy appears to have been light, conversely, the unusual environment forced major alterations of the subsistence economy imported by the colonists. Settlement-era archaeological records suggest that, from the start, patterns of resource use differed substantially from the regional norm, and these differences became amplified over time as the Faroese economy created a locally sustainable cultural landscape.     

Plants in the works of cervantes

El Ingenioso Hidalgo, Don Quijote de la Mancha, by Miguel de Cervantes (1547–1616), is the best-known work of Spanish literature. We searched this and the other works of Cervantes for references to plants, plant communities, and products. These texts capture the customs, thoughts, beliefs, and traditions of Spanish culture in the late 16th and early 17th centuries. They also repeat literary themes of ancient Greek and Roman literature. Plant citations were grouped in three categories: plants as part of the environment, useful plants, and plants in symbolic expressions. A total of 150 species were registered, 102 of which appear inDon Quijote. The taxa with the highest frequency of occurrence areVitis vinifera, Phoenix dactylifera, Triticum aestivum, Laurus nobilis, Rosa spp.,Olea europaea, Quercus ilex, andArundo donax. The number of references to plants and the variety of species seem to attest to a sound and intimate knowledge of plants, their relevance as a landscape feature, and their utility. Many edible, ornamental, technological, and medicinal plants are referred to either explicitly or implicitly. Several species are mentioned in a figurative sense through references to their symbolic meaning, in proverbs, idiomatic expressions, metaphors, or by mentioning them in comparisons and literary figures of speech.     

Uncertainty in Diatom Assessment: Sampling, Identification and Counting Variation

Despite the widespread application of periphytic diatoms to water quality assessment at a regional level, there is no standard European sampling protocol or associated assessment metrics. Furthermore, relatively little is known about the uncertainty in the results of such assessments. One of the objectives of the European project for the Standardisation of River Classifications (STAR) is to improve and standardise diatom assessment methods. An extensive diatom ring test, together with an audit of the project results, provided a better understanding and quantification of the uncertainty in quality assessment of running waters using diatoms. The variation in multimetric analysis shows that the choice of site and substrate for sampling, the inter-operator differences in diatom taxonomy and the counting techniques are the primary sources of uncertainty. To some extent, this variation also reveals the robustness of specific metrics in relation to the sources of uncertainty. Of the three most common substrate types tested (stone, macrophyte and sediment), macrophytes emerge as the most preferred substrate for diatom sampling when performing multimetric water quality assessment.     

Biogeographic Patterns of Intertidal Macroinvertebrates and their Association with Macroalgae Distribution along the Portuguese Coast

Geographical patterns in the distribution of epifaunal crustaceans (Amphipoda, Isopoda and Tanaidacea) occurring with dominant macroalgal species were investigated along the Portuguese rocky coast. Three regions, each encompassing six shores, were studied. Algal species were selected according to their geographical distribution: Mastocarpusstellatus and Chondrus crispus (north); Bifurcariabifurcata (north-centre); Plocamiumcartilagineum and Cystoseiratamariscifolia (centre-south); Corallina spp. and Codiumtomentosum (entire coast). Multivariate techniques were used to test for differences in crustacean assemblage composition between sub-regions and host algal species. A clear gradient of species substitution was observed from north to south. Differences in abundance and diversity of epifaunal crustaceans were observed between southern locations and the remaining sites. Four species were recorded for the first time in the Portuguese coast. Among the 57 taxa identified, southern distribution limits were observed for three species and northern distribution limits were observed for four species. Interestingly, the observed geographical patterns in epifaunal abundance and diversity were not related with geographical changes in the indentity of the dominant algal species.     

Field growth characteristics of two aquatic carnivorous plants,Aldrovanda vesiculosa andUtricularia australis

Basic growth characteristics of two species of free-floating submerged carnivorous plants, the very rare and stenotopicAldrovanda vesiculosa and the very common and eurytopicUtricularia australis, were investigated in a 10/11-day field growth experiment within three nylon enclosures at two artificialAldrovanda sites in the T?eboň region, S Bohemia, Czech Republic, at the peak of a growing season. Growth ofAldrovanda was best at a meso-eutrophic site (biomass doubling time,T ₂, 8.4–10.7 days, mean growth of new leaf whorls 0.96 whorls days^?1, 1.6 developed branches per shoot) and slower at an oligo-mesotrophic site (T ₂ 17.2–21.5 days, growth of whorls 1.01 whorls days^?1, 0.1–0.5 branches per shoot). Growth ofUtricularia was similar at both sites (T ₂ 19.8–33.2 days or 9.1–16.8 days, growth of whorls 3.1 or 2.7 whorls days^?1, 1.5–2.1 or 0.8–1.4 developed branches per shoot at the former or latter site, respectively). Throughout the experiment, both species at the meso-eutrophic site allocated relatively more biomass to the production and growth of branches, than to that of new whorls. The results show thatAldrovanda, although usually considered as competitively weaker, can grow faster during the growing season peak thanUtricularia due to frequent branching and the subsequent rapid growth and separation of daughter shoots. Very rapid growth of rootless aquatic carnivorous plants in nutrient-poor habitats allows the consideration of ecophysiological adaptations that enable the plants to gain limiting mineral nutrients. These adaptations include carnivory, efficient nutrient reutilization from senescent shoots, and very high affinity for mineral nutrient uptake from water. Comparison of growth rates of rare and stenotopicA. vesiculosa and very common and eurytopicU. australis shows that differences in their rarity do not seem to be based on differences of growth rate.     

The first crystal structure of class III superoxide reductase from Treponema pallidum

Superoxide reductase (SOR) is a metalloprotein containing a non-heme iron centre, responsible for the scavenging of superoxide radicals in the cell. The crystal structure of Treponema pallidum (Tp) SOR was determined using soft X-rays and synchrotron radiation. Crystals of the oxidized form were obtained using poly(ethylene glycol) and MgCl₂ and diffracted beyond 1.55 Å resolution. The overall architecture is very similar to that of other known SORs but TpSOR contains an N-terminal domain in which the desulforedoxin-type Fe centre, found in other SORs, is absent. This domain conserves the β-barrel topology with an overall arrangement very similar to that of other SOR proteins where the centre is present. The absence of the iron ion and its ligands, however, causes a decrease in the cohesion of the domain and some disorder is observed, particularly in the region where the metal would be harboured. The C-terminal domain exhibits the characteristic immunoglobulin-like fold and harbours the Fe(His)₄(Cys) active site. The five ligands of the iron centre are well conserved despite some disorder observed for one of the four molecules in the asymmetric unit. The participation of a glutamate as the sixth ligand of some of the iron centres in Pyrococcus furiosus SOR was not observed in TpSOR. A possible explanation is that either X-ray photoreduction occurred or there was a mixture of redox states at the start of data collection. In agreement with earlier proposals, details in the TpSOR structure also suggest that Lys49 might be involved in attraction of superoxide to the active site.This work is dedicated to the memory of Prof. Frank Rusnak.Coordinates and observed structure factor amplitudes have been deposited in the Protein Data Bank under the accession code 1Y07.     

Mathematical modeling of collagen turnover in biological tissue

We present a theoretical and computational model for collagen turnover in soft biological tissues. Driven by alterations in the mechanical environment, collagen fiber bundles may undergo important chronic changes, characterized primarily by alterations in collagen synthesis and degradation rates. In particular, hypertension triggers an increase in tropocollagen synthesis and a decrease in collagen degradation, which lead to the well-documented overall increase in collagen content. These changes are the result of a cascade of events, initiated mainly by the endothelial and smooth muscle cells. Here, we represent these events collectively in terms of two internal variables, the concentration of growth factor TGF- $\beta $ and tissue inhibitors of metalloproteinases TIMP. The upregulation of TGF- $\beta $ increases the collagen density. The upregulation of TIMP also increases the collagen density through decreasing matrix metalloproteinase MMP. We establish a mathematical theory for mechanically-induced collagen turnover and introduce a computational algorithm for its robust and efficient solution. We demonstrate that our model can accurately predict the experimentally observed collagen increase in response to hypertension reported in literature. Ultimately, the model can serve as a valuable tool to predict the chronic adaptation of collagen content to restore the homeostatic equilibrium state in vessels with arbitrary micro-structure and geometry.     

Selenium Species and Their Distribution in Freshwater Fish from Argentina

The distribution and speciation of selenium (Se) in freshwater fish (muscle and liver tissue) from lakes in Argentina was investigated. Three introduced species, brown trout (Salmo trutta), rainbow trout (Oncorhynchus mykiss) and brook trout (Salvelinus fontinalis), and one native species, creole perch (Percichthys trucha), were investigated. Values for total selenium in muscle ranged from 0.66 to 1.61 μg/g, while in the liver, concentrations were much higher, from 4.46 to 73.71 μg/g on a dry matter basis. Separation of soluble Se species (SeCys₂, selenomethionine (SeMet), SeMeSeCys, selenite and selenate) was achieved by ion exchange chromatography and detection was performed by inductively coupled plasma–mass spectrometry. The results showed that in fish muscle, from 47 to 55 % of selenium was soluble and the only Se species identified was SeMet, which represented around 80 % of soluble Se, while in the liver, the amount of soluble Se ranged from 61 to 76 % and the percentage of species identified (SeMet and SeCys₂) was much lower and ranged from 8 to 17 % of soluble Se.