Potential of embryonic and adult stem cells in vitro

Recent developments in the field of stem cell research indicate their enormous potential as a source of tissue for regenerative therapies. The success of such applications will depend on the precise properties and potentials of stem cells isolated either from embryonic, fetal or adult tissues. Embryonic stem cells established from the inner cell mass of early mouse embryos are characterized by nearly unlimited proliferation, and the capacity to differentiate into derivatives of essentially all lineages. The recent isolation and culture of human embryonic stem cell lines presents new opportunities for reconstructive medicine. However, important problems remain; first, the derivation of human embryonic stem cells from in vitro fertilized blastocysts creates ethical problems, and second, the current techniques for the directed differentiation into somatic cell populations yield impure products with tumorigenic potential. Recent studies have also suggested an unexpectedly wide developmental potential of adult tissue-specific stem cells. Here too, many questions remain concerning the nature and status of adult stem cells both in vivo and in vitro and their proliferation and differentiation/transdifferentiation capacity. This review focuses on those issues of embryonic and adult stem cell biology most relevant to their in vitro propagation and differentiation. Questions and problems related to the use of human embryonic and adult stem cells in tissue regeneration and transplantation are discussed.     

Phenotype selection reveals coevolution of muscle glycogen and protein and PTEN as a gate keeper for the accretion of muscle mass in adult female mice

We have investigated molecular mechanisms for muscle mass accretion in a non-inbred mouse model (DU6P mice) characterized by extreme muscle mass. This extreme muscle mass was developed during 138 generations of phenotype selection for high protein content. Due to the repeated trait selection a complex setting of different mechanisms was expected to be enriched during the selection experiment. In muscle from 29-week female DU6P mice we have identified robust increases of protein kinase B activation (AKT, Ser-473, up to 2-fold) if compared to 11- and 54-week DU6P mice or controls. While a number of accepted effectors of AKT activation, including IGF-I, IGF-II, insulin/IGF-receptor, myostatin or integrin-linked kinase (ILK), were not correlated with this increase, phosphatase and tensin homologue deleted on chromosome 10 (PTEN) was down-regulated in 29-week female DU6P mice. In addition, higher levels of PTEN phosphorylation were found identifying a second mechanism of PTEN inhibition. Inhibition of PTEN and activation of AKT correlated with specific activation of p70S6 kinase and ribosomal protein S6, reduced phosphorylation of eukaryotic initiation factor 2α (eIF2α) and higher rates of protein synthesis in 29-week female DU6P mice. On the other hand, AKT activation also translated into specific inactivation of glycogen synthase kinase 3? (GSK3?) and an increase of muscular glycogen. In muscles from 29-week female DU6P mice a significant increase of protein/DNA was identified, which was not due to a reduction of protein breakdown or to specific increases of translation initiation. Instead our data support the conclusion that a higher rate of protein translation is contributing to the higher muscle mass in mid-aged female DU6P mice. Our results further reveal coevolution of high protein and high glycogen content during the selection experiment and identify PTEN as gate keeper for muscle mass in mid-aged female DU6P mice.     

Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations

Phospho- and sphingolipids are crucial cellular and intracellular compounds. These lipids are required for active transport, a number of enzymatic processes, membrane formation, and cell signalling. Disruption of their metabolism leads to several diseases, with diverse neurological, psychiatric, and metabolic consequences. A large number of phospholipid and sphingolipid species can be detected and measured in human plasma. We conducted a meta-analysis of five European family-based genome-wide association studies (N = 4034) on plasma levels of 24 sphingomyelins (SPM), 9 ceramides (CER), 57 phosphatidylcholines (PC), 20 lysophosphatidylcholines (LPC), 27 phosphatidylethanolamines (PE), and 16 PE-based plasmalogens (PLPE), as well as their proportions in each major class. This effort yielded 25 genome-wide significant loci for phospholipids (smallest P-value = 9.88×10⁻²⁰⁴) and 10 loci for sphingolipids (smallest P-value = 3.10×10⁻⁵⁷). After a correction for multiple comparisons (P-value<2.2×10⁻⁹), we observed four novel loci significantly associated with phospholipids (PAQR9, AGPAT1, PKD2L1, PDXDC1) and two with sphingolipids (PLD2 and APOE) explaining up to 3.1% of the variance. Further analysis of the top findings with respect to within class molar proportions uncovered three additional loci for phospholipids (PNLIPRP2, PCDH20, and ABDH3) suggesting their involvement in either fatty acid elongation/saturation processes or fatty acid specific turnover mechanisms. Among those, 14 loci (KCNH7, AGPAT1, PNLIPRP2, SYT9, FADS1-2-3, DLG2, APOA1, ELOVL2, CDK17, LIPC, PDXDC1, PLD2, LASS4, and APOE) mapped into the glycerophospholipid and 12 loci (ILKAP, ITGA9, AGPAT1, FADS1-2-3, APOA1, PCDH20, LIPC, PDXDC1, SGPP1, APOE, LASS4, and PLD2) to the sphingolipid pathways. In large meta-analyses, associations between FADS1-2-3 and carotid intima media thickness, AGPAT1 and type 2 diabetes, and APOA1 and coronary artery disease were observed. In conclusion, our study identified nine novel phospho- and sphingolipid loci, substantially increasing our knowledge of the genetic basis for these traits.     

Syk-mediated translocation of PI3Kdelta to the leading edge controls lamellipodium formation and migration of leukocytes

The non-receptor tyrosine kinase Syk is mainly expressed in the hematopoietic system and plays an essential role in beta(2) integrin-mediated leukocyte activation. To elucidate the signaling pathway downstream of Syk during beta2 integrin (CD11/CD18)-mediated migration and extravasation of polymorphonuclear neutrophils (PMN), we generated neutrophil-like differentiated HL-60 (dHL-60) cells expressing a fluorescently tagged Syk mutant lacking the tyrosine residue at the position 323 (Syk-Tyr323) that is known to be required for the binding of the regulatory subunit p85 of the phosphatidylinositol 3-kinase (PI3K) class I(A). Syk-Tyr323 was found to be critical for the enrichment of the catalytic subunit p110delta of PI3K class I(A) as well as for the generation of PI3K products at the leading edge of the majority of polarized cells. In accordance, the translocation of PI3K p110delta to the leading edge was diminished in Syk deficient murine PMN. Moreover, the expression of EGFP-Syk Y323F interfered with proper cell polarization and it impaired efficient migration of dHL-60 cells. In agreement with a major role of beta2 integrins in the recruitment of phagocytic cells to sites of lesion, mice with a Syk-deficient hematopoietic system demonstrated impaired PMN infiltration into the wounded tissue that was associated with prolonged cutaneous wound healing. These data imply a novel role of Syk via PI3K p110delta signaling for beta2 integrin-mediated migration which is a prerequisite for efficient PMN recruitment in vivo.     

An isolated helix persists in a sparsely populated form of KIX under native conditions

NMR relaxation dispersion techniques were used to investigate conformational exchange of the three-helix bundle protein KIX under native conditions. These experiments provide site-resolved kinetic information about microsecond-to-millisecond time scale motions along with structural (chemical shift) information without requiring a perturbation of the equilibrium. All kinetic data are consistent with an apparent two-state transition between natively folded KIX and a partially unfolded high-energy state that is populated to 3.0 +/- 0.2% at 27 degrees C. By combining (13)C- and (15)N-based experiments that probe specific structural aspects, we show that the sparsely populated high-energy state displays a strong conformational preference. An isolated secondary structural element, C-terminal helix alpha3, is highly populated, while the hydrophobic core of the domain and the remainder of the protein backbone, including helices alpha1 and alpha2, are disordered and devoid of specific interactions. This high-energy state presumably represents the equilibrium analogue of a folding intermediate that is transiently populated in stopped-flow kinetic experiments [Horng, J. C., Tracz, S. M., Lumb, K. J., and Raleigh, D. P. (2002) Biochemistry 44, 627-634].     

Transducin Beta-Like Gene FTL1 Is Essential for Pathogenesis in Fusarium graminearum

Fusarium head blight caused by Fusarium graminearum is an important disease of wheat and barley. In a previous study, we identified several mutants with reduced virulence by insertional mutagenesis. A transducin beta-like gene named FTL1 was disrupted in one of these nonpathogenic mutants. FTL1 is homologous to Saccharomyces cerevisiae SIF2, which is a component of the Set3 complex involved in late stages of ascospore formation. The Δftl1 mutant was significantly reduced in conidiation and failed to cause typical disease symptoms. It failed to colonize the vascular tissues of rachis or cause necrosis on the rachis of inoculated wheat heads. The Δftl1 mutant also was defective in spreading from infected anthers to ovaries and more sensitive than the wild type to plant defensins MsDef1 and osmotin. However, the activation of two mitogen-activated protein kinases, Mgv1 and Gpmk1, production of deoxynivalenol, and expression of genes known to be important for plant infection in F. graminearum were not affected, indicating that the defect of the Δftl1 mutant in plant infection is unrelated to known virulence factors in this pathogen and may involve novel mechanisms. The Δftl1 deletion mutant was significantly reduced in histone deacetylation, and many members of the yeast Set3 complex are conserved in F. graminearum. FTL1 appears to be a component of this well-conserved protein complex that plays a critical role in the penetration and colonization of wheat tissues.The filamentous ascomycete Fusarium graminearum (teleomorph Gibberella zeae) is the main causal agent of Fusarium head blight (FHB), or scab, which is an important disease on wheat and barley throughout the world (18). It also causes stalk and ear rots of maize and infects other small grains. In addition to causing yield losses, this pathogen often contaminates infested grains with trichothecene and estrogenic mycotoxins, such as deoxynivalenol (DON) and zearalenone. Unfortunately, complete resistance to F. graminearum is lacking in wheat, and fungicide application is not cost-effective for FHB control in wheat and barley.F. graminearum overwinters in infected plant debris and produces ascospores in the spring. Ascospores are forcibly discharged from mature perithecia (52) and function as the primary inoculum for FHB. The multicellular conidia or macroconidia are important for spreading the disease in the field and colonizing plant vegetative tissues. Wheat spikes are most susceptible to FHB at anthesis (34a). Although F. graminearum can colonize glumes, anthers are the main site of primary infection on flowering wheat heads (3, 38). Earlier studies indicated that wheat anther extracts stimulate F. graminearum virulence on wheat. Choline and glycine betaine were identified as two major components in anthers that stimulate fungal growth and predispose wheat to F. graminearum infection (50, 51). Under conducive conditions, the fungus can spread from the infected floret along the rachis and cause severe damage. The production of DON, the first virulence factor identified in F. graminearum (11, 42), is not necessary for the initial infection but is important for the spread of FHB on infected wheat heads (2).In the past few years, genetic and genomic studies of F. graminearum have advanced significantly. The genome of F. graminearum has been sequenced (10) and a whole-genome microarray of this haploid homothallic fungus is commercially available (21). A number of pathogenicity or virulence factors have been identified by insertional mutagenesis or targeted gene deletion approaches. Two mitogen-activated protein (MAP) kinase genes, MGV1 and GPMK1, are essential for pathogenicity in F. graminearum (23, 24). Genes that are important for full virulence in F. graminearum on wheat include FGL1 (54), GzCPS1 (31), FBP1 (22), FSR1 (48), SID1 (19), NPS6 (37), RAS2 (5), GzGPA2 and GzGPB1 (56), and HMR1 (47). These virulence-associated genes encode proteins with various biochemical activities, such as lipase, nonribosomal peptide synthase, Ras protein, and 3-hydroxy 3-methylglutaryl coenzyme A reductase. Several genes involved in the primary metabolism, such as the CBL1, RSY1, GzHIS7, ADE5, and ARG2 genes (29, 44, 46) that are required for methionine, histidine, and arginine syntheses, also have been implicated in plant infection in F. graminearum. Overall, molecular mechanisms underlying F. graminearum pathogenesis appear to be complex and remain to be fully understood.In a previous study, we identified 11 restriction enzyme-mediated integration (REMI) mutants that are defective in plant infection (46). In one of these mutants, the transforming vector was inserted in a predicted gene named FTL1 (for Fusarium transducin beta-like gene 1). FTL1 is homologous to the mammalian TBL1 or TBLR1 genes (40, 55) and the Saccharomyces cerevisiae SIF2 gene (8). The products of these genes are components of protein complexes involving histone deacetylases (HDACs). In mammalian cells, TBL1 and TBLR1 are parts of the N-CoR/SMRT/HDAC complexes (40). In yeast, SIF2 is a part of the Set3 complex regulating ascospore formation. In F. graminearum, the Δftl1 gene replacement mutant was significantly reduced in conidiation and failed to cause typical head blight symptoms on flowering wheat heads. It failed to colonize vascular tissues or cause necrosis on the rachis of inoculated wheat heads. The Δftl1 mutant also was defective in spreading from infected anthers to ovaries and was more sensitive than the wild type to plant defensins MsDef1 and osmotin. Although it was normal in the production of deoxynivalenol and the expression of known virulence factors, the Δftl1 mutant was significantly reduced in HDAC activities. FTL1 appears to be a component of this well-conserved HDAC complex that plays a critical role in the penetration and colonization of wheat tissues.     

Analysis of purine receptor expression and functionality in alveolar epithelial cells

Despite its fundamental role in providing an extensive surface for gas exchange, the alveolar epithelium (AE) serves as an immunological barrier through, e.g., the release of proinflammatory cytokines and secretion of surfactant to prevent alveolar collapse. Thus, AE is important for sustaining lung homeostasis. Extracellular ATP secreted by alveolar epithelial cells (AECs) is involved in physiological and pathological conditions and acts mainly through the activation of purine receptors (P2Rs). When studying P2R-mediated processes, primary isolated type II AECs (piAECs) still represent the gold standard in in vitro research, although their preparation is time-consuming and requires the sacrifice of many animals. Hence, cultivated immortalized and tumor-derived AEC lines may constitute a valuable alternative. In this work, we examined P2R expression and functionality in piAECs, in immortalized and tumor-derived AEC lines with the purpose of gaining a better understanding of purinergic signaling in different cell systems and assisting researchers in the choice of a suitable cell line with a certain P2R in demand. We combined mRNA and protein analysis to evaluate the expression of P2R. For pharmacological testing, we conducted calcium ([Ca²⁺]) measurements and siRNA receptor knockdown. Interestingly, the mRNA and protein levels of P2Y₂, P2Y_6, and P2X₄ were detected on all cell lines. Concerning functionality, P2XR could be narrowed to L2 and piAECs while P2YR were active in all cell lines.

     

Seasonal dietary niche contraction in coexisting Neotropical frugivorous bats (Stenodermatinae)

Tropical dry forests are characterized by punctuated seasonal precipitation patterns that drive primary production and the availability of fruits, seeds, flowers, and insects throughout the year. In environments in which the quantity and quality of food resources varies seasonally, consumers should adjust their foraging behavior to maximize energy intake while minimizing overlap with competitors during periods of low food availability. Here, we investigated how the diets of frugivorous bats in tropical dry forests of NW Mexico varied in response to seasonal availability and how this affected dietary overlap of morphologically similar species. We performed stable isotope analyses to understand temporal and interspecific patterns of overall isotopic niche breadth, trophic position, and niche overlap in the diet of six frugivorous species of closely related New World leaf-nosed bats (family Phyllostomidae, subfamily Stenodermatinae). We estimated seasonal changes in resource abundance in two complementary ways: (a) vegetative phenology based on long-term remote sensing data and (b) observational data on food availability from previously published insect and plant fruiting surveys. In all species, there was a consistent pattern of reduced isotopic niche breadth during periods of low food availability. However, patterns of niche overlap varied between morphologically similar species. Overall, results from our study and others suggest that seasonal food availability likely determines overall dietary niche breadth in Phyllostomidae and that despite morphological specialization, it is likely that other mechanisms, such as opportunistic foraging and spatiotemporal niche segregation, may play a role in maintaining coexistence rather than simply dietary displacement.     

Preclinical insights into the gut‐skeletal muscle axis in chronic gastrointestinal diseases

Muscle wasting represents a constant pathological feature of common chronic gastrointestinal diseases, including liver cirrhosis (LC), inflammatory bowel diseases (IBD), chronic pancreatitis (CP) and pancreatic cancer (PC), and is associated with increased morbidity and mortality. Recent clinical and experimental studies point to the existence of a gut‐skeletal muscle axis that is constituted by specific gut‐derived mediators which activate pro‐ and anti‐sarcopenic signalling pathways in skeletal muscle cells. A pathophysiological link between both organs is also provided by low‐grade systemic inflammation. Animal models of LC, IBD, CP and PC represent an important resource for mechanistic and preclinical studies on disease‐associated muscle wasting. They are also required to test and validate specific anti‐sarcopenic therapies prior to clinical application. In this article, we review frequently used rodent models of muscle wasting in the context of chronic gastrointestinal diseases, survey their specific advantages and limitations and discuss possibilities for further research activities in the field. We conclude that animal models of LC‐, IBD‐ and PC‐associated sarcopenia are an essential supplement to clinical studies because they may provide additional mechanistic insights and help to identify molecular targets for therapeutic interventions in humans.     

Secreted Fungal Effector Lipase Releases Free Fatty Acids to Inhibit Innate Immunity-Related Callose Formation during Wheat Head Infection

The deposition of the (1,3)-β-glucan cell wall polymer callose at sites of attempted penetration is a common plant defense response to intruding pathogens and part of the plant’s innate immunity. Infection of the Fusarium graminearum disruption mutant Δfgl1, which lacks the effector lipase FGL1, is restricted to inoculated wheat (Triticum aestivum) spikelets, whereas the wild-type strain colonized the whole wheat spike. Our studies here were aimed at analyzing the role of FGL1 in establishing full F. graminearum virulence. Confocal laser-scanning microscopy revealed that the Δfgl1 mutant strongly induced the deposition of spot-like callose patches in vascular bundles of directly inoculated spikelets, while these callose deposits were not observed in infections by the wild type. Elevated concentrations of the polyunsaturated free fatty acids (FFAs) linoleic and α-linolenic acid, which we detected in F. graminearum wild type-infected wheat spike tissue compared with Δfgl1-infected tissue, provided clear evidence for a suggested function of FGL1 in suppressing callose biosynthesis. These FFAs not only inhibited plant callose biosynthesis in vitro and in planta but also partially restored virulence to the Δfgl1 mutant when applied during infection of wheat spikelets. Additional FFA analysis confirmed that the purified effector lipase FGL1 was sufficient to release linoleic and α-linolenic acids from wheat spike tissue. We concluded that these two FFAs have a major function in the suppression of the innate immunity-related callose biosynthesis and, hence, the progress of F. graminearum wheat infection.The molecular and physiological regulation of the biosynthesis of callose, which is a (1,3)-β-glucan polymer with some (1,6)-branches (Aspinall and Kessler, 1957), and its importance for plant development as well as plant defense are still under examination. Regarding the involvement of callose in plant defense responses, particular attention has been focused on the formation of cell wall thickenings in plants, so-called papillae, at sites of microbial attack. They were already described 150 years ago (deBary, 1863) and reported to commonly contain callose (Mangin, 1895). Since then, examinations have identified callose as the most abundant chemical constituent in papillae, which may also include proteins (e.g. peroxidases and antimicrobial thionins), phenolics, and other constituents (Aist and Williams, 1971; Sherwood and Vance, 1976; Mims et al., 2000). Papillae have been regarded as an early defense reaction that may not completely stop the pathogen; rather, they have been considered to act as a physical barrier to slow pathogen invasion (Stone and Clarke, 1992; Voigt and Somerville, 2009) and to contribute to the plant’s innate immunity (Jones and Dangl, 2006; Schwessinger and Ronald, 2012). The host plant can gain time to initiate defense reactions that require gene activation and expression, such as the hypersensitive reactions, phytoalexin production, and pathogenesis-related protein synthesis (Lamb and Dixon, 1997; Brown et al., 1998). However, our recent study revealed that callose can also act as a barrier that completely prevents fungal penetration. The overexpression of POWDERY MILDEW RESISTANT4 (PMR4), a gene encoding a stress-induced callose synthase, resulted in early elevated callose deposition at sites of attempted powdery mildew penetration in Arabidopsis (Arabidopsis thaliana; Ellinger et al., 2013). Interestingly, the pmr4 deletion mutant also showed an increased resistance to powdery mildew that, however, was induced at later stages of powdery mildew infection because an initial fungal penetration still occurred. In fact, the absence of the functional callose synthase PMR4 in the pmr4 mutant resulted in papillae that were free from callose but also induced a hyperactivation of the salicylic acid defense pathway, which was shown to be the basis of resistance in double mutant and microarray analyses (Jacobs et al., 2003; Nishimura et al., 2003). The callose synthase gene PMR4 from Arabidopsis belongs to the GLUCAN SYNTHASE-LIKE (GSL) family, genes that have been identified in higher plants including wheat (Triticum aestivum; Cui et al., 2001; Doblin et al., 2001; Hong et al., 2001; Østergaard et al., 2002; Voigt et al., 2006). The predicted function of these genes as callose synthases is generally supported by homology with the yeast FK506 SENSITIVITY (FKS) genes, which are believed to be subunits of (1,3)-β-glucan synthase complexes (Douglas et al., 1994; Dijkgraaf et al., 2002). Additionally, the predicted proteins encoded by the GSL genes correlate with the approximately 200-kD catalytic subunit of putative callose synthases. Li et al. (2003) showed that the amino acid sequence predicted from a GSL gene in barley (Hordeum vulgare; HvGSL1) correlates with the amino acid sequence of an active (1,3)-β-glucan synthase fraction.In this study, we aimed to examine the involvement of callose synthesis and callose deposition in plant defense against intruding fungal pathogens in the pathosystem wheat-Fusarium graminearum. We focused on the ability of wheat to inhibit a further spread of fungal pathogens after an initial, successful infection. This resistance to fungal spread within the host has been referred to as type II resistance and is part of a widely accepted two-component system of resistance, which includes type I resistance operating against initial infection (Schroeder and Christensen, 1963). For our analyses, we used the direct interaction between wheat as host and F. graminearum as a pathogen. On the one hand, Fusarium head blight (FHB) of wheat, caused by F. graminearum, is one of the most destructive crop diseases worldwide (McMullen et al., 1997; del Blanco et al., 2003; Madgwick et al., 2011) and classifies this fungus as a top 10 plant pathogen based on its importance in science and agriculture (Dean et al., 2012). On the other hand, only a limited number of wheat cultivars were identified that revealed FHB resistance. However, these cultivars did not qualify for commercial cultivation or breeding approaches due to inappropriate agronomic traits (Buerstmayr et al., 2009). Further elucidation of the mechanisms of spreading resistance could support the generation of FHB-resistant wheat cultivars.In this regard, we demonstrated that the secreted lipase FGL1 of F. graminearum is a virulence factor required for wheat infection (Voigt et al., 2005). A strong resistance to fungal spread was observed in a susceptible wheat cultivar after infection with the lipase-deficient F. graminearum strain Δfgl1. Light microscopy indicated barrier formation in the transition zone of rachilla and rachis of directly inoculated spikelets. In contrast, neither spreading resistance nor barrier formation was observed during F. graminearum wild type infection. An active role of lipases in establishing full virulence was also recently proposed for the plant pathogen Fusarium oxysporum f. sp. lycopersici, where reduced lipolytic activity due to the deletion of lipase regulatory genes resulted in reduced colonization of tomato (Solanum lycopersicum) plants (Bravo-Ruiz et al., 2013). Because the expression of the lipase-encoding gene LIP1 was induced in the biotrophic fungus Blumeria graminis during early stages of infection (Feng et al., 2009) and disruption of the putative secreted lipase gene lipA resulted in reduced virulence of the bacterial plant pathogen Xanthomonas campestris (Tamir-Ariel et al., 2012), a general importance of extracellular lipolytic activity during plant colonization is indicated.We evaluated a possible role of callose in plant defense by infecting wheat spikes with the virulent fungal pathogen F. graminearum wild type, the virulence-deficient F. graminearum deletion mutant Δfgl1, and the barley leaf pathogen Pyrenophora teres, the latter intended to induce strong plant defense responses as known from incompatible, nonhost interactions. The formation of callose plugs within the vascular bundles of inoculated spikelets and the callose synthase activity of infected spikelet tissue correlated directly with increased plant resistance. Subsequent analyses of free fatty acid (FFA) concentrations revealed that those polyunsaturated FFAs were enriched during wheat infection with the F. graminearum wild-type strain that could inhibit callose synthase activity in vitro as well as in planta and partially restored the virulence of the lipase-deficient F. graminearum strain Δfgl1. On the basis of these results, we propose a model for FHB where defense-related callose synthase is inhibited by specific FFAs whose accumulation is caused by the fungus during fungal infection; this inhibition is required for full infection of the wheat head.