Characterization of recombinant camel chymosin reveals superior properties for the coagulation of bovine and camel milk

Enzymatic milk coagulation for cheese manufacturing involves the cleavage of the scissile bond in kappa-casein by an aspartic acid protease. Bovine chymosin is the preferred enzyme, combining a strong clotting activity with a low general proteolytic activity. In the present study, we report expression and enzymatic properties of recombinant camel chymosin expressed in Aspergillus niger. Camel chymosin was shown to have different characteristics than bovine chymosin. Camel chymosin exhibits a 70% higher clotting activity for bovine milk and has only 20% of the unspecific protease activity for bovine chymosin. This results in a sevenfold higher ratio of clotting to general proteolytic activity. The enzyme is more thermostable than bovine chymosin. Kinetic analysis showed that half-saturation is achieved with less than 50% of the substrate required for bovine chymosin and turnover rates are lower. While raw camel milk cannot be clotted with bovine chymosin, a high clotting activity was found with camel chymosin.     

Freezing at -800 degrees C distorts the DNA composition of bacterial communities in intestinal samples

Terminal-restriction fragment length polymorphism (T-RFLP) was used to evaluate how to store intestinal specimens for bacterial community analysis. Bacterial communities are increasingly often described by means of DNA-based methods and it is common practice to store intestinal or faecal specimens either at -20 degrees C or -80 degrees C. In this study, samples of intestines from five different pigs were stored at -80 degrees C and -20 degrees C, respectively and a thawing and freezing procedure was carried out three times for each intestinal per pig per temperature. The cumulative sum of the T-RFLP peak heights (T-RF intensities) decreased as the temperature decreased. The composition of the bacterial community changed when stored at -80 degrees C compared to the samples stored at -20 degrees C. Thus it is recommended from this study that samples of intestinal content are stored at -20 degrees C before use for bacterial community analysis, instead of the current practice at -80 degrees C.     

Satellite-based mapping of the growing season and bioclimatic zones in Fennoscandia

Aim  To test whether satellite-derived NDVI values obtained during the growing season as delimited by the onset of phenological phases can be used to map bioclimatically a large region such as Fennoscandia.
Location  Fennoscandia north of about 58° N and neighbouring parts of NW Russia.
Methods  Phenology data on birch from 15 research stations and the half-monthly GIMMS-NDVI data set with 8 × 8 km² resolution from the period 1982–2002 were used to characterize the growing season. To link surface phenology with NDVI data, new algorithms on a pixel-by-pixel basis that show high correlation with phenophases on birch were developed. Then, time-integrated values (TI NDVI) during the phenologically defined growing season were computed to produce a bioclimatological map of Fennoscandia, which was tested and correlated with growing degree days (GDD) obtained from 20 meteorological stations. The map was also compared vs. traditional bioclimatic maps, and analysed for error factors distorting NDVI values.
Results  The correlation between GDD and TI NDVI data during the phenologically defined growing season was very high. Therefore, the TI NDVI map could be presented as a bioclimatic map reflecting GDD. However, several major areas have interfering factors distorting NDVI values, such as the pixel heterogeneity caused by the altitudinal mosaic in western Norway, the mosaic of lakes in southeastern Finland, and the agriculture-dominated areas in southern Fennoscandia.
Main conclusions  TI NDVI data from the phenologically defined growing season during 1982–2002 in Fennoscandia can be processed as a bioclimatic map reflecting GDD, except for the areas distorting NDVI values by their strong ground-cover heterogeneity.     

Q10 measures of metabolic performance and critical swimming speed in King George whiting Sillaginodes punctatus

This study examined thermally driven changes in swimming performance and aerobic metabolism (Q₁₀ and aerobic scope of activity) of adult King George whiting Sillaginodes punctatus to the coldest (16° C) and the warmest (26° C) temperature encountered by this species. Compensation of aerobic scope, higher maximal swimming speeds and a maintained capacity to repay oxygen debt indicate that this species is capable of thermal acclimation to conditions expected under global warming.     

Early stages of Calluna vulgaris regeneration after burning of coastal heath in central Norway

Questions: How does Calluna vulgaris regenerate after burning wet and dry heaths of different age? Location: Central Norway. Methods: Patches of Calluna dominated old and young wet heath and old dry heath were burned. The mean temperatures reached in the categories of heath were measured. Cover, frequency, height and number of seedlings of Calluna were studied in plots. Results: The mean burning temperatures varied from 680 to 740°C, and were highest in wet heath that had not been burned for at least 50 years. Regeneration of Calluna was evident in the year of burning, but only from seeds. Even heath with a short burning interval lacked vegetative regeneration. Calluna cover increased yearly and exceeded 50 % three years after burning. Regeneration was evident in the year of burning, and was highest in heath with a short burning interval. The height increased regularly at all sites, but was most rapid in dry heath, probably because of better microclimatic conditions. There were more seedlings in the heath with a short burning interval. Conclusions: Calluna only regenerates from seeds afterburning in central Norway. The density of Calluna increased rapidly, which is positive for the conservation and management of coastal heaths in central Norway.     

Discriminant analysis of volatile organic compounds of Fusarium oxysporum f. sp. cepae and Fusarium proliferatum isolates from onions as indicators of fungal growth

Basal rot is a common onion disease and is mainly caused by Fusarium oxysporum f. sp. cepae and Fusarium proliferatum. To study the possibility of using volatile organic compounds (VOCs) as biomarkers for these fungi, pathogenic isolates of F. oxysporum and F. proliferatum from onions were cultivated in onion medium and VOCs were measured by solid phase microextraction (SPME). Forty-two compounds were detected, and thirty of these compounds were highly related to fungal metabolic activity. Allyl mercaptan was specific to F. oxysporum isolate Fox006. Analysis of the VOCs showed significant differences between the two species and among different isolates within the same species. Sixteen of the VOCs showed were highly positively correlated with the fungal biomass estimated by real-time polymerase chain reaction (PCR). Ethanol, ethyl formate, ethyl acetate, 2-methyl-1-propanol, methyl thioacetate, n-propyl acetate and 3-methyl-1-butanol are volatile metabolites that were potential indicators of Fusarium growth on onions.     

Domain Requirements of the JIL-1 Tandem Kinase for Histone H3 Serine 10 Phosphorylation and Chromatin Remodeling in Vivo

The JIL-1 kinase localizes to Drosophila polytene chromosome interbands and phosphorylates histone H3 at interphase, counteracting histone H3 lysine 9 dimethylation and gene silencing. JIL-1 can be divided into four main domains, including an NH₂-terminal domain, two separate kinase domains, and a COOH-terminal domain. In this study, we characterize the domain requirements of the JIL-1 kinase for histone H3 serine 10 (H3S10) phosphorylation and chromatin remodeling in vivo. We show that a JIL-1 construct without the NH₂-terminal domain is without H3S10 phosphorylation activity despite the fact that it localizes properly to polytene interband regions and that it contains both kinase domains. JIL-1 is a double kinase, and we demonstrate that both kinase domains of JIL-1 are required to be catalytically active for H3S10 phosphorylation to occur. Furthermore, we provide evidence that JIL-1 is phosphorylated at serine 424 and that this phosphorylation is necessary for JIL-1 H3S10 phosphorylation activity. Thus, these data are compatible with a model where the NH₂-terminal domain of JIL-1 is required for chromatin complex interactions that position the kinase domain(s) for catalytic activity in the context of the state of higher order nucleosome packaging and chromatin structure and where catalytic H3S10 phosphorylation activity mediated by the first kinase domain is dependent on autophosphorylation of serine 424 by the second kinase domain. Furthermore, using a lacO repeat tethering system to target mutated JIL-1 constructs with or without catalytic activity, we show that the epigenetic H3S10 phosphorylation mark itself functions as a causative regulator of chromatin structure independently of any structural contributions from the JIL-1 protein.