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91.
92.
Monika Rottstegge Tom Tipton Lisa Oestereich Paula Ruibal Emily V. Nelson Catherine Olal Julia R. Port Johan Seibel Elisa Pallasch Sabrina Bockholt Fara Raymond Koundouno Joseph Akoi Bor Estefanía Rodríguez Beatriz Escudero-Prez Stephan Günther Miles W. Carroll Csar Muoz-Fontela 《Journal of virology》2022,96(18)
93.
Aline Acke Siska Van
Belle Boris Louis Raffaele Vitale Susana Rocha Thierry Voet Zeger Debyser Johan Hofkens 《Nucleic acids research》2022,50(17):e100
Interactions between epigenetic readers and histone modifications play a pivotal role in gene expression regulation and aberrations can enact etiopathogenic roles in both developmental and acquired disorders like cancer. Typically, epigenetic interactions are studied by mass spectrometry or chromatin immunoprecipitation sequencing. However, in these methods, spatial information is completely lost. Here, we devise an expansion microscopy based method, termed Expansion Microscopy for Epigenetics or ExEpi, to preserve spatial information and improve resolution. We calculated relative co-localization ratios for two epigenetic readers, lens epithelium derived growth factor (LEDGF) and bromodomain containing protein 4 (BRD4), with marks for heterochromatin (H3K9me3 and H3K27me3) and euchromatin (H3K36me2, H3K36me3 and H3K9/14ac). ExEpi confirmed their preferred epigenetic interactions, showing co-localization for LEDGF with H3K36me3/me2 and for BRD4 with H3K9/14ac. Moreover addition of JQ1, a known BET-inhibitor, abolished BRD4 interaction with H3K9/14ac with an IC50 of 137 nM, indicating ExEpi could serve as a platform for epigenetic drug discovery. Since ExEpi retains spatial information, the nuclear localization of marks and readers was determined, which is one of the main advantages of ExEpi. The heterochromatin mark, H3K9me3, is located in the nuclear rim whereas LEDGF co-localization with H3K36me3 and BRD4 co-localization with H3K9/14ac occur further inside the nucleus. 相似文献
94.
Suraj B. Baloda Gunnar Fröman Johan E. Peeters Torkel Wadström 《FEMS microbiology letters》1986,34(2):225-229
Abstract 32 different strains of Escherichia coli isolated from rabbits with diarrhoea were studied for cell-surface properties which may be involved in intestinal colonisation. Strains isolated from diarrhoeic suckling (6 strains) and weaning (26 strains) rabbits which were shown to attach to brush borders in vivo, showed high relative cell-surface hydrophobicity as determined by the Salt Aggregation Test (SAT) when grown on Colonisation Factor Antigen (CFA) agar at 33°C. Cells of these strains grown to express surface hydrophobicity were also defined as high, moderate or low binders of 125 I-fibronectin or its 125 I-29-kDa fragment in a standard binding assay. Based on these findings, we propose that binding to intestinal cell surface (mucus)-associated fibronectin may be an early important step in intestinal colonisation of the small bowel in enteropathogenic E. coli (EPEC) diarrhoea in rabbits and other animal species. 相似文献
95.
Céline Arzel Johan Elmberg Matthieu Guillemain Michel Lepley Fabrice Bosca Pierre Legagneux Jean-Baptiste Nogues 《Journal of Ornithology》2009,150(1):61-73
Two frequent assumptions about the evolution of long-distance migration in birds are that they travel long distances annually
to reach food-rich areas for breeding, and that they time their migratory journey to be at staging sites when the latter provide
the best feeding conditions. These assumptions have rarely been properly tested, and there is no study in which a species’
major food types have been measured by standardized methods throughout a flyway and over a large part of the year. We here
present such data for Eurasian teal (Anas crecca), converted to a common energetic currency, and collected at wintering, spring staging and breeding sites. Teal did not time
migration to maximize local food abundance; most birds left wintering and spring staging sites before a sharp increase in
invertebrate food abundance occurred. On the other hand, hatching of ducklings coincided with a peak in invertebrate food
abundance on boreal breeding lakes. Mean overall food abundance (invertebrates and seeds combined) did not differ between
wintering sites in southern France and breeding sites in northern Sweden at the time of breeding. Our results are inconsistent
with the hypothesis that long-distance migration in dabbling ducks has evolved because adult birds gain an immediate pay-off
in increased food abundance by flying north in spring. However, our data confirm a selective advantage for breeding at higher
latitudes, because hatching of ducklings may coincide with a peak in invertebrate emergence and because longer days may increase
the duration of efficient foraging. 相似文献
96.
Jonathan C Lansing Morten Hohwy Christopher P Jaroniec A F L Creemers Johan Lugtenburg Judith Herzfeld Robert G Griffin 《Biochemistry》2002,41(2):431-438
In recent years, structural information about bacteriorhodopsin has grown substantially with the publication of several crystal structures. However, precise measurements of the chromophore conformation in the various photocycle states are still lacking. This information is critical because twists about the chromophore backbone chain can influence the Schiff base nitrogen position, orientation, and proton affinity. Here, we focus on the C14-C15 bond, using solid-state nuclear magnetic resonance spectroscopy to measure the H-C14-C15-H dihedral angle. In the resting state (bR(568)), we obtain an angle of 164 +/- 4 degrees, indicating a 16 degrees distortion from a planar all-trans chromophore. The dihedral angle is found to decrease to 147 +/- 10 degrees in the early M intermediate (M(o)) and to 150 +/- 4 degrees in the late M intermediate (M(n)). These results demonstrate changes in the chromophore conformation undetected by recent X-ray diffraction studies. 相似文献
97.
Nilsson J Persson B Von Heijne G 《Protein science : a publication of the Protein Society》2002,11(12):2974-2980
We have developed a method to reliably identify partial membrane protein topologies using the consensus of five topology prediction methods. When evaluated on a test set of experimentally characterized proteins, we find that approximately 90% of the partial consensus topologies are correctly predicted in membrane proteins from prokaryotic as well as eukaryotic organisms. Whole-genome analysis reveals that a reliable partial consensus topology can be predicted for approximately 70% of all membrane proteins in a typical bacterial genome and for approximately 55% of all membrane proteins in a typical eukaryotic genome. The average fraction of sequence length covered by a partial consensus topology is 44% for the prokaryotic proteins and 17% for the eukaryotic proteins in our test set, and similar numbers are found when the algorithm is applied to whole genomes. Reliably predicted partial topologies may simplify experimental determinations of membrane protein topology. 相似文献
98.
Katrijn Van Laere Soraya C. França Hein Vansteenkiste Johan Van Huylenbroeck Kathy Steppe Marie-Christine Van Labeke 《Acta Physiologiae Plantarum》2011,33(4):1149-1156
In this study, we analysed morphological, anatomical and physiological effects of polyploidisation in Spathiphyllum
wallisii in order to evaluate possible interesting advantages of polyploids for ornamental breeding. Stomatal density was negatively
correlated with increased ploidy level. Stomatal size increased in polyploids. Tetraploid Spathiphyllum plants had more ovate and thicker leaves. The inflorescence of tetraploids had a more ovate and thicker spathum, a more cylindrical
spadix and a thicker but shorter flower stalk. Biomass production of the tetraploids was reduced, as expressed by lower total
dry weights, and tetraploids produced fewer shoots and leaves compared with their diploid progenitors. Furthermore, tetraploid
Spathiphyllum plants were more resistant to drought stress compared with diploid plants. After 15 days of drought stress, diploids showed
symptoms of wilting, while the tetraploids showed almost no symptoms. Further, measurements of stomatal resistance, leaf water
potential, relative water content and proline content indicated that the tetraploid genotypes were more resistant to drought
stress compared with the diploids. 相似文献
99.
Using the ecosystem services approach for better planning and conservation of urban green spaces: a Finland case study 总被引:6,自引:0,他引:6
Jari Niemelä Sanna-Riikka Saarela Tarja Söderman Leena Kopperoinen Vesa Yli-Pelkonen Seija Väre D. Johan Kotze 《Biodiversity and Conservation》2010,19(11):3225-3243
Ecosystem services are vital for humans in urban regions. However, urban development poses a great risk for the ability of
ecosystems to provide these services. In this paper we first address the most important ecosystem services in functional urban
regions in Finland. Well accessible and good quality recreational ecosystem services, for example, provided by urban nature,
are an important part of a high-quality living environment and important for public health. Vegetation of urban regions can
have a role in carbon dioxide sequestration and thus in climate change mitigation. For instance, estimates of carbon sinks
can be compared to total CO2 emissions of an urban region, and the municipality can aim at both increasing carbon sinks and decreasing CO2 emissions with proper land-use planning. Large and contiguous core nature areas, smaller green areas and ecological connections
between them are the essence of regional ecological networks and are essential for maintaining interconnected habitats for
species and thus biological diversity. Thus, both local and regional level ecological networks are vital for maintaining ecosystem
services in urban regions. The impacts of climate change coupled with land-use and land cover change will bring serious challenges
for maintaining ecosystem services in urban areas. Although not yet widely used in planning practices, the ecosystem services
approach can provide an opportunity for land-use planning to develop ecologically sustainable urban regions. Currently, information
on ecosystem services of urban regions is lacking and there is a need to improve the knowledge base for land-use planning. 相似文献
100.
Jinshu Chi Mats B. Nilsson Hjalmar Laudon Anders Lindroth Jrgen Wallerman Johan E. S. Fransson Natascha Kljun Tomas Lundmark Mikaell Ottosson Lfvenius Matthias Peichl 《Global Change Biology》2020,26(4):2353-2367
The boreal biome exchanges large amounts of carbon (C) and greenhouse gases (GHGs) with the atmosphere and thus significantly affects the global climate. A managed boreal landscape consists of various sinks and sources of carbon dioxide (CO2), methane (CH4), and dissolved organic and inorganic carbon (DOC and DIC) across forests, mires, lakes, and streams. Due to the spatial heterogeneity, large uncertainties exist regarding the net landscape carbon balance (NLCB). In this study, we compiled terrestrial and aquatic fluxes of CO2, CH4, DOC, DIC, and harvested C obtained from tall‐tower eddy covariance measurements, stream monitoring, and remote sensing of biomass stocks for an entire boreal catchment (~68 km2) in Sweden to estimate the NLCB across the land–water–atmosphere continuum. Our results showed that this managed boreal forest landscape was a net C sink (NLCB = 39 g C m?2 year?1) with the landscape–atmosphere CO2 exchange being the dominant component, followed by the C export via harvest and streams. Accounting for the global warming potential of CH4, the landscape was a GHG sink of 237 g CO2‐eq m?2 year?1, thus providing a climate‐cooling effect. The CH4 flux contribution to the annual GHG budget increased from 0.6% during spring to 3.2% during winter. The aquatic C loss was most significant during spring contributing 8% to the annual NLCB. We further found that abiotic controls (e.g., air temperature and incoming radiation) regulated the temporal variability of the NLCB whereas land cover types (e.g., mire vs. forest) and management practices (e.g., clear‐cutting) determined their spatial variability. Our study advocates the need for integrating terrestrial and aquatic fluxes at the landscape scale based on tall‐tower eddy covariance measurements combined with biomass stock and stream monitoring to develop a holistic understanding of the NLCB of managed boreal forest landscapes and to better evaluate their potential for mitigating climate change. 相似文献