The Database of European Forest Insect and Disease Disturbances: DEFID2

Insect and disease outbreaks in forests are biotic disturbances that can profoundly alter ecosystem dynamics. In many parts of the world, these disturbance regimes are intensifying as the climate changes and shifts the distribution of species and biomes. As a result, key forest ecosystem services, such as carbon sequestration, regulation of water flows, wood production, protection of soils, and the conservation of biodiversity, could be increasingly compromised. Despite the relevance of these detrimental effects, there are currently no spatially detailed databases that record insect and disease disturbances on forests at the pan-European scale. Here, we present the new Database of European Forest Insect and Disease Disturbances (DEFID2). It comprises over 650,000 harmonized georeferenced records, mapped as polygons or points, of insects and disease disturbances that occurred between 1963 and 2021 in European forests. The records currently span eight different countries and were acquired through diverse methods (e.g., ground surveys, remote sensing techniques). The records in DEFID2 are described by a set of qualitative attributes, including severity and patterns of damage symptoms, agents, host tree species, climate-driven trigger factors, silvicultural practices, and eventual sanitary interventions. They are further complemented with a satellite-based quantitative characterization of the affected forest areas based on Landsat Normalized Burn Ratio time series, and damage metrics derived from them using the LandTrendr spectral–temporal segmentation algorithm (including onset, duration, magnitude, and rate of the disturbance), and possible interactions with windthrow and wildfire events. The DEFID2 database is a novel resource for many large-scale applications dealing with biotic disturbances. It offers a unique contribution to design networks of experiments, improve our understanding of ecological processes underlying biotic forest disturbances, monitor their dynamics, and enhance their representation in land-climate models. Further data sharing is encouraged to extend and improve the DEFID2 database continuously. The database is freely available at https://jeodpp.jrc.ec.europa.eu/ftp/jrc-opendata/FOREST/DISTURBANCES/DEFID2/ .     

All-reagent test tablets and method for rapid and selective alpha-amylase iodometric determination

The new type of test tablets (Iodocrom) for alpha-amylase assay contain crosslinked (CL)-amylose or CL-starch (specific substrates for alpha-amylase only) and the reagent (KIO3/KI) generating iodine (in acidic medium, when the reaction is stopped). The method--amyloclastic in nature--is based on selective action of alpha-amylase on the CL-substrate liberating soluble polysaccharide chains large enough and in a conformation suitable to allow the formation of iodine inclusion complexes. Unlike the classical iodometric methods, the reaction is followed by an increase in iodine complex blue color. The method has some common points with the well-known chromogenic (e.g., Phadebas) methods. Both use insoluble substrates which are not susceptible to attack by exoamylases and in both cases the enzymatic reaction is followed by the release of soluble products. The amounts of these released chains and the absorbances of their inclusion complexes with iodine are in a linear dependence with the enzyme concentration (activity).     

Sensitive and fast simultaneous photometric determination of oxygen consumption and NAD(P)H formation or disappearance using a continuous flow cuvette

The photometric determination of the oxygen consumption and NAD(P)H formation or disappearance on the same sample were performed by alternative recordings at 334 nm (in the vicinity of an isosbestic point of HbO₂-Hb spectra) and at 436 nm. The optical homogeneity of the medium during the reaction was ensured by continuous stirring, and the automatic emptying and filling of the cuvettes were achieved with glass cuvettes specially built for this purpose. This method permits rapid and accurate estimations on 20–100 μg of microsomal protein, for hydroxylation reactions with rates which are comparable to, or at least one-tenth of the “free” oxidation rate of NADPH. On the other hand, using the same amount of mitochondrial protein, informations concerning oxidative phosphorylation could be obtained within a time interval of 3–4 min/sample.     

Characterisation of the potamal Danube River and the Delta: connectivity determines indicative macrophyte assemblages

The complexity of water bodies in the eu-potamal river corridor and the main delta channels of the Romanian Danube is exemplified by the macrophyte vegetation. Two hypotheses provided the background for our study: (a) is the macrophyte vegetation of large, permanently connected branches significantly separated from that of the main river channel; (b) is the macrophyte composition of the Danube main stem significantly altered when the river divides into the three large navigable Delta channels. Water bodies considered were two contiguous sections of the main river channel, two large branches remaining from the historical floodplain, and the three main Delta channels. We quantified macrophyte diversity and floristic variation. Our data set was prepared from the MIDCC-project data base, in which macrophyte occurrence, abundance and habitat parameters are stored for contiguous survey units of the whole Danube river corridor. Field survey method followed that of Kohler and the European Standard EN14184. Results confirmed our first hypothesis: permanently connected side branches still support significantly different macrophyte assemblages, making them important indicators of floodplain connectivity. The diversion of the Danube into its three large navigable delta channels significantly alters the macrophyte vegetation from the c. 300 km of main stem up-river, substantially supporting our second hypothesis. Our results largely enhance the knowledge on aquatic plant biodiversity in the eu-potamal Danube, forming a solid base for long-term studies. We also discuss the relevance of our results regarding the ecological, as well as the conservational, quality of rivers and their floodplains.     

Effects of Long-Term exposure to Heavy Metals upon Rhizosphere Bacteria from Baia Mare Area (Maramureş County,Romania)

Abstract

The aim of this study was to investigate the extent of heavy metal (HM) pollution and its effect on microorganisms from rhizosphere soil in Baia Mare area (Maramure? County, Romania). Two sites with different contamination degrees were included in the study: one with a long history of mining activities and one within a drinking water safeguard zone. Rhizosphere soil samples were characterized with respect to physico-chemical parameters and the Cd, Cu, Pb and Zn contents. Native bacteria were investigated for HM tolerance and biofilm formation under toxic exposure by the microdilution assay. The most resistant strains were identified and the minimum inhibitory concentrations for HMs were determined. Cd, Cu, Pb and Zn exceeded the intervention threshold in Bozânta tailings site, while Pb content exceeded the intervention level within the area of the drinking water treatment plant. Cd showed a very high potential ecological risk in Bozânta area. The long-term exposure to HMs contributed to the selection of HM-tolerant and weakly adherent strains. Biofouling was significantly reduced under the influence of copper ions. Arthrobacter, Rhodococcus and Acidovorax strains with exceptional resistant profiles were isolated from the tailings site, indicating the important role of native microorganisms in rhizosphere ecosystems of contaminated sites.     

Map-based cloning identifies velvet A as a critical component of virulence in Fusarium pseudograminearum during infection of wheat heads

Although better known as a pathogen of wheat stem bases, Fusarium pseudograminearum also causes Fusarium head blight. A natural isolate of F. pseudograminearum was identified that showed severely reduced virulence towards wheat heads and a map-based cloning approach was undertaken to identify the genetic basis of this phenotype. Using a population of 95 individuals, a single locus on chromosome 1 was shown to be responsible for the low virulence. Fine mapping narrowed the region to just five possible SNPs of which one was in the F. pseudograminearum homologue of velvet A. Knockout mutants of velvet A, which were non-pathogenic towards wheat, confirmed that velvet A regulates virulence in this pathogen. The mutation in velvet A was only found in a single field isolate and the origin of the mutation is unknown.