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161.
MOTIVATION: High-throughput 'ChIP-chip' and 'ChIP-seq' methodologies generate sufficiently large data sets that analysis poses significant informatics challenges, particularly for research groups with modest computational support. To address this challenge, we devised a software platform for storing, analyzing and visualizing high resolution genome-wide binding data. GeneTrack automates several steps of a typical data processing pipeline, including smoothing and peak detection, and facilitates dissemination of the results via the web. Our software is freely available via the Google Project Hosting environment at http://genetrack.googlecode.com 相似文献
162.
Airong Li Yue Zhu Xingbing He Xingjun Tian Liang Xu Wu Ni Ping Jiang 《World journal of microbiology & biotechnology》2008,24(4):569-572
Six selected plants, belonging to 3 families from Nanjing of China, were extracted with the solvent 95% (v/v) ethanol to yield
11 extracts. The extracts were evaluated for their effects on the growth of eight clinical bacteria, two fungi and one yeast
using a modified agar diffusion method. The results showed that the majority of the extracts investigated showed greater activities
against the Gram-positive bacteria than against the Gram-negative bacteria, the fungi and the yeast. The strongest antimicrobial
activity was exhibited by the stem extracts of Mahonia fortunei against multiresistant Staphylococcus aureus strains, followed by the stem extracts of Mahonia bealei, while Bacillus thuringiensis was the most sensitive to all extracts. 相似文献
163.
Background
Neurons are dynamically coupled with each other through neurite-mediated adhesion during development. Understanding the collective behavior of neurons in circuits is important for understanding neural development. While a number of genetic and activity-dependent factors regulating neuronal migration have been discovered on single cell level, systematic study of collective neuronal migration has been lacking. Various biological systems are shown to be self-organized, and it is not known if neural circuit assembly is self-organized. Besides, many of the molecular factors take effect through spatial patterns, and coupled biological systems exhibit emergent property in response to geometric constraints. How geometric constraints of the patterns regulate neuronal migration and circuit assembly of neurons within the patterns remains unexplored.Methodology/Principal Findings
We established a two-dimensional model for studying collective neuronal migration of a circuit, with hippocampal neurons from embryonic rats on Matrigel-coated self-assembled monolayers (SAMs). When the neural circuit is subject to geometric constraints of a critical scale, we found that the collective behavior of neuronal migration is spatiotemporally coordinated. Neuronal somata that are evenly distributed upon adhesion tend to aggregate at the geometric center of the circuit, forming mono-clusters. Clustering formation is geometry-dependent, within a critical scale from 200 µm to approximately 500 µm. Finally, somata clustering is neuron-type specific, and glutamatergic and GABAergic neurons tend to aggregate homo-philically.Conclusions/Significance
We demonstrate self-organization of neural circuits in response to geometric constraints through spatiotemporally coordinated neuronal migration, possibly via mechanical coupling. We found that such collective neuronal migration leads to somata clustering, and mono-cluster appears when the geometric constraints fall within a critical scale. The discovery of geometry-dependent collective neuronal migration and the formation of somata clustering in vitro shed light on neural development in vivo. 相似文献164.
Background
The paired box 6 (PAX6) gene is considered as a master gene for eye development. Linkage of myopia to the PAX6 region on chromosome 11p13 was shown in several studies, but the results for association between myopia and PAX6 were inconsistent so far.Methodology/Principal Findings
We genotyped 16 single nucleotide polymorphisms (SNPs) in the PAX6 gene and its regulatory regions in an initial study for 300 high myopia cases and 300 controls (Group 1), and successfully replicated the positive results with another independent group of 299 high myopia cases and 299 controls (Group 2). Five SNPs were genotyped in the replication study. The spherical equivalent of subjects with high myopia was ≤−8.0 dioptres. The PLINK package was used for genetic data analysis. No association was found between each of the SNPs and high myopia. However, exhaustive sliding-window haplotype analysis highlighted an important role for rs12421026 because haplotypes containing this SNP were found to be associated with high myopia. The most significant results were given by the 4-SNP haplotype window consisting of rs2071754, rs3026393, rs1506 and rs12421026 (P = 3.54×10−10, 4.06×10−11 and 1.56×10−18 for Group 1, Group 2 and Combined Group, respectively) and the 3-SNP haplotype window composed of rs3026393, rs1506 and rs12421026 (P = 5.48×10−10, 7.93×10−12 and 6.28×10−23 for the three respective groups). The results remained significant after correction for multiple comparisons by permutations. The associated haplotyes found in a previous study were also successfully replicated in this study.Conclusions/Significance
PAX6 haplotypes are associated with susceptibility to the development of high myopia in Chinese. The PAX6 locus plays a role in high myopia. 相似文献165.
Ran Wen Haining Lv Yong Jiang Pengfei Tu 《Bioorganic & medicinal chemistry letters》2018,28(6):1050-1055
A phytochemical study on the roots of Pongamia pinnata afforded five new isoflavone and isoflavanone derivatives (1–5), including two previously undescribed phenylisoflavones possessing an 1,2-oxetane ring, along with 21 known compounds (6–26) among which compound 18 is the first time to be isolated from nature. The structures of the isolated compounds were determined on the basis of 1D, 2D NMR, and HRESIMS. The absolute configurations of the compounds were assigned via analysis of the specific rotations and circular dichroism (CD) spectra, as well as by comparison of the calculated and experimental electronic circular dichroism (ECD) data. All the isolated compounds were evaluated for their inhibitory effects on NO production in LPS-stimulated BV-2 microglial cells. Twelve compounds exhibited different levels of inhibitory effects against NO production, and compound 1 showed the best activity with an IC50 value at 9.0?μM. 相似文献
166.
167.
Mitochondrial unfolded protein response gene Clpp is required to maintain ovarian follicular reserve during aging,for oocyte competence,and development of pre‐implantation embryos 下载免费PDF全文
Tianren Wang Elnur Babayev Zongliang Jiang Guangxin Li Man Zhang Ecem Esencan Tamas Horvath Emre Seli 《Aging cell》2018,17(4)
Caseinolytic peptidase P mediates degradation of unfolded mitochondrial proteins and activates mitochondrial unfolded protein response (mtUPR) to maintain protein homeostasis. Clpp?/? female mice generate a lower number of mature oocytes and two‐cell embryos, and no blastocysts. Clpp?/? oocytes have smaller mitochondria, with lower aspect ratio (length/width), and decreased expression of genes that promote fusion. A 4‐fold increase in atretic follicles at 3 months, and reduced number of primordial follicles at 6–12 months are observed in Clpp?/? ovaries. This is associated with upregulation of p‐S6, p‐S6K, p‐4EBP1 and p‐AKT473, p‐mTOR2481 consistent with mTORC1 and mTORC2 activation, respectively, and Clpp?/? oocyte competence is partially rescued by mTOR inhibitor rapamycin. Our findings demonstrate that CLPP is required for oocyte and embryo development and oocyte mitochondrial function and dynamics. Absence of CLPP results in mTOR pathway activation, and accelerated depletion of ovarian follicular reserve. 相似文献
168.
169.
对天然羊草群落进行灌水和施肥后,测定了它们(灌水、灌水加施肥和对照)的群落光合速率。结果如下:1.在灌水、施肥加灌水处理后23天测定,处理群落的叶层高度分别比对照高8%和9%;群落LAI分别比对照高68.97%和99.93%;群落生物量分别比对照高41%和65.69%;群落日净光合量分别是对照的2.48倍和3.76倍;最大光合量分别是对照的2.82倍和3.12倍。2.灌水施肥处理后,羊草群落光合速率日变化的类型与对照基本一致,属于双峰型。唯独灌水加施肥群落(处理后3天)是单峰型,没有中午降低现象。看出较好的水肥条件能改变群落的日变化类型。3.在温湿度条件较差时或随着处理时间的推移,处理的效果越显著。第一阶段测定时,灌水、灌水加施肥处理的群落日净光合量分别是对照的1.26和1.17倍。第二阶段测定时,分别是对照的1.40和1.84倍。第三阶段测定时,分别是对照的2.48和3.76倍。 相似文献
170.
Ding Xiaotao Jiang Yuping Wang Hong Jin Haijun Zhang Hongmei Chen Chunhong Yu Jizhu 《Acta Physiologiae Plantarum》2013,35(5):1427-1438
The effects of 6-benzylaminopurine (6-BA) on plant growth, net photosynthetic rate, relative chlorophyll content, soluble protein, carbohydrates contents and antioxidant systems of cucumber (Cucumis sativus L.) under low-light environment were investigated using two different cucumber cultivars. The results showed that the weak light resulted in the remarkable decrease in plant net photosynthetic rate, relative chlorophyll content, soluble protein and carbohydrates contents, but promoted the superoxide dismutase and guaiacol peroxidase activities. However, application of 6-BA alleviated the reduction of the correlative parameters and mediated the changes of antioxidant systems. The potential mechanisms may involve the following aspects: 6-BA clearly enhanced the plants’ tolerance to low light by increasing chlorophyll content, reducing the production of superoxide radical (O 2 ·? ), and enhancing the quenching of hydrogen peroxide (H2O2), consequently alleviating the injury of photosynthetic system, and further increasing the efficiency of CO2 assimilation, producing more carbohydrates which can meet the growth need of cucumber. Meanwhile, the present study indicated that cucumber of Europe mini type (Chunqiuwang) was more tolerant to low light than HuaNan type (Huza No.3). 相似文献