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BACKGROUND: Comparative genomic hybridization (CGH) is a relatively new molecular cytogenetic method for detecting chromosomal imbalance. Karyotyping of human metaphases is an important step to assign each chromosome to one of 23 or 24 classes (22 autosomes and two sex chromosomes). Automatic karyotyping in CGH analysis is needed. However, conventional karyotyping approaches based on DAPI images require complex image enhancement procedures. METHODS: This paper proposes a simple feature extraction method, one that generates density profiles from original true color CGH images and uses normalized profiles as feature vectors without quantization. A classifier is developed by using support vector machine (SVM). It has good generalization ability and needs only limited training samples. RESULTS: Experiment results show that the feature extraction method of using color information in CGH images can improve greatly the classification success rate. The SVM classifier is able to acquire knowledge about human chromosomes from relatively few samples and has good generalization ability. A success rate of moe than 90% has been achieved and the time for training and testing is very short. CONCLUSIONS: The feature extraction method proposed here and the SVM-based classifier offer a promising computerized intelligent system for automatic karyotyping of CGH human chromosomes. 相似文献
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A temperature increase from 35° to 40–42°C enhances the rise of cytoplasmic serine proteinase (ISP1) activity in Bacillus megaterium incubated in a sporulation medium. A temperature shift from 27°C in the growth medium to 35°C in the sporulation medium has the same effect. Elevated temperature stimulates the increase of ISP1 level when applied immediately after the transfer of cells from the growth to the sporulation medium (at T0) or at T3, when sporulation becomes irreversible. The cytoplasmic PMSF-resistant activity or the proteolytic activity associated with the membrane fraction is stimulated only slightly or not at all. A temperature increase to 45–47°C suppresses the rise of proteolytic activities in all cell fractions. In addition to the elevation of the ISP1 activity by an upward temperature shift, the rise of this enzyme in nongrowing cells is also stimulated by osmotic stress. In growing populations, in contrast to the rise of the ISP1 activity caused by elevated temperature in nongrowing cells, this proteinase is induced by low temperatures (24–27°C). The ISP1 activity roughly correlates with the enzyme protein concentration determined by immunoblotting. 相似文献
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Anderson KS Sibani S Wallstrom G Qiu J Mendoza EA Raphael J Hainsworth E Montor WR Wong J Park JG Lokko N Logvinenko T Ramachandran N Godwin AK Marks J Engstrom P Labaer J 《Journal of proteome research》2011,10(1):85-96
Cancer patients spontaneously generate autoantibodies (AAb) to tumor-derived proteins. To detect AAb, we have probed novel high-density custom protein microarrays (NAPPA) expressing 4988 candidate tumor antigens with sera from patients with early stage breast cancer (IBC), and bound IgG was measured. We used a three-phase serial screening approach. First, a prescreen was performed to eliminate uninformative antigens. Sera from stage I-III IBC (n = 53) and healthy women (n = 53) were screened for AAb to all 4988 protein antigens. Antigens were selected if the 95th percentile of signal of cases and controls were significantly different (p < 0.05) and if the number of cases with signals above the 95th percentile of controls was significant (p < 0.05). These 761 antigens were screened using an independent set of IBC sera (n = 51) and sera from women with benign breast disease (BBD) (n = 39). From these, 119 antigens had a partial area under the ROC curve (p < 0.05), with sensitivities ranging from 9-40% at >91% specificity. Twenty-eight of these antigens were confirmed using an independent serum cohort (n = 51 cases/38 controls, p < 0.05). Using all 28 AAb, a classifier was identified with a sensitivity of 80.8% and a specificity of 61.6% (AUC = 0.756). These are potential biomarkers for the early detection of breast cancer. 相似文献
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2006—2017年长白山阔叶红松林木本植物种子雨的时空动态 总被引:1,自引:0,他引:1
种子是森林更新的基础.为研究长白山阔叶红松林种子雨组成及时空变化,在长白山阔叶红松林25 hm2样地内设置150个面积为0.5 m2的收集器.自2006年5月至2017年12月收集252次,共收集到成熟、未成熟种子764299粒,隶属12科17属27种,其中,主林层树种13种704231粒,占总数的90%以上.种子最多的4个树种依次为紫椴、水曲柳、色木槭、假色槭,每年各个收集器都收集到这4个树种的种子;种子雨大爆发现象在各林层树种均存在,次林层和林下层较主林层树种滞后1~2年;各林层树种集中在秋季产生种子,各树种的种子雨都存在较大的时空变异性,相对而言,多数树种的空间变异性大于时间变异性;与科罗拉多岛(BCI)热带森林样地和浙江古田山亚热带常绿林样地种子产量的年际变异系数相比,长白山阔叶红松林种子产量年际变异系数较大,支持高纬度地区种子产量变异性高于低纬度地区的假说. 相似文献
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