南京农业大学微生物学虚拟仿真实验教学模式的探索

借助虚拟仿真技术构建的虚实结合的虚拟仿真实验,是提高学生实践动手能力的有力补充和有效途径。本文通过对微生物学实验教学现状的分析,探讨南京农业大学微生物学虚拟仿真实验教学模式建设的意义,重点阐述建设思路、建设方案及教学特点。该仿真实验教学体系主要从基础微生物学和应用微生物学两大模块进行构建,同时将本校的污水生物处理技术、食用菌资源调查与利用等科研成果转化为教学资源,以丰富实验教学内容。     

基于扩展的Budyko模型定量评估平江流域森林恢复和气候变异对季节性径流的影响

流域季节性径流变化反映了年内水资源的动态特征。在以森林为主的流域中,森林变化和气候变异被普遍认为是影响流域水文过程的两大驱动因素。因此在全球气候变化背景下,研究流域森林恢复和气候变异对流域季节性径流的影响,可为协调区域碳-水关系和制订可持续的森林经营管理策略提供参考。选择鄱阳湖流域上游的平江流域为研究对象,根据流域历史森林覆盖率变化情况,将研究期划分为参考期（1961-1985）和森林恢复期（1986-2006）,采用Mann-Kendall趋势分析研究流域长时期水文气象数据是否存在显著变化趋势。同时引入月干旱指数（潜在蒸散发和有效降雨的比率）,将一年定义为能量限制季（1-6月）和水分限制季（7-12月）,结合扩展的Budyko模型定量分析平江流域森林恢复和气候变异对季节性径流的相对贡献。在本研究流域整个研究期内（1961-2006）,通过Mann-Kendall趋势分析发现,研究流域水分限制季径流呈现显著增加趋势,而能量限制季水文和气候变量变化趋势均不显著。其次,相较于参考期,流域森林恢复使能量限制季径流降低了11.71 mm/a （24.40%）,使水分限制季径流增加了12.27 mm/a （17.23%）。同时,气候变异导致能量限制季径流减少了36.28 mm/a （75.60%）,而使水分限制季径流增加了58.94 mm/a （82.77%）。上述研究结果表明,森林恢复对径流影响具有累积效应。森林恢复对季节性径流具有积极的调节作用,同时季节性径流对森林恢复的响应存在时间差,而且森林恢复对径流的影响在能量限制季和水分限制季具有相互抵消的作用,气候变异与森林恢复的影响效应类似。此外,本研究也证实,平江流域季节性径流变化主要是受气候变化主导,但森林恢复对季节性径流的贡献也不容忽视。     

Role of PCK2 in the proliferation of vascular smooth muscle cells in neointimal hyperplasia

Vascular smooth muscle cell (VSMC) proliferation is a hallmark of neointimal hyperplasia (NIH) in atherosclerosis and restenosis post-balloon angioplasty and stent insertion. Although numerous cytotoxic and cytostatic therapeutics have been developed to reduce NIH, it is improbable that a multifactorial disease can be successfully treated by focusing on a preconceived hypothesis. We, therefore, aimed to identify key molecules involved in NIH via a hypothesis-free approach. We analyzed four datasets ({"type":"entrez-geo","attrs":{"text":"GSE28829","term_id":"28829"}}GSE28829, {"type":"entrez-geo","attrs":{"text":"GSE43292","term_id":"43292"}}GSE43292, {"type":"entrez-geo","attrs":{"text":"GSE100927","term_id":"100927"}}GSE100927, and {"type":"entrez-geo","attrs":{"text":"GSE120521","term_id":"120521"}}GSE120521), evaluated differentially expressed genes (DEGs) in wire-injured femoral arteries of mice, and determined their association with VSMC proliferation in vitro. Moreover, we performed RNA sequencing on platelet-derived growth factor (PDGF)-stimulated human VSMCs (hVSMCs) post-phosphoenolpyruvate carboxykinase 2 (PCK2) knockdown and investigated pathways associated with PCK2. Finally, we assessed NIH formation in Pck2 knockout (KO) mice by wire injury and identified PCK2 expression in human femoral artery atheroma. Among six DEGs, only PCK2 and RGS1 showed identical expression patterns between wire-injured femoral arteries of mice and gene expression datasets. PDGF-induced VSMC proliferation was attenuated when hVSMCs were transfected with PCK2 siRNA. RNA sequencing of PCK2 siRNA-treated hVSMCs revealed the involvement of the Akt-FoxO-PCK2 pathway in VSMC proliferation via Akt2, Akt3, FoxO1, and FoxO3. Additionally, NIH was attenuated in the wire-injured femoral artery of Pck2-KO mice and PCK2 was expressed in human femoral atheroma. PCK2 regulates VSMC proliferation in response to vascular injury via the Akt-FoxO-PCK2 pathway. Targeting PCK2, a downstream signaling mediator of VSMC proliferation, may be a novel therapeutic approach to modulate VSMC proliferation in atherosclerosis.     

生态系统生态学研究的关键问题及趋势——从“整体论与还原论的争论”看

在生态学领域中,存在着生态系统整体论与还原论的争论。Tansley A.G.提出,生态系统是"准有机体"。Odum兄弟提出的"生态系统能量说"被广泛接受,但也受到质疑,称其为"还原论者的整体论"。基于对上述质疑的回应以及对生态系统整体论的追求,Patten B.C.等提出"生态网络理论",运用"网络‘环境子’分析"方法,试图从物理层面分析解决生物层面的"涌现性"问题。不过,这一理论也受到批判,认为其在探究符号化的现象对生态系统的动态影响时,陷入了还原论困境。Jrgensen S.E.等更进一步,提出"系统论"的生态系统生态学,试图从系统科学的角度研究生态系统的"物质-能量-信息-网络"系统。这一理论受到生态学界高度重视,但是也存在着在具体研究过程中如何平衡能量视角和生物地球化学视角的问题。由上述争论可见,生态系统生态学研究的趋势是从"物质实体"到"能量流动",再到"网络信息",最后到"开放系统"层层递进。目前面临的关键问题是:如何在更好地定义生态系统整体性的基础上,采取相应的能够体现生态系统整体性的方法,去获得更多、更好的生态系统整体性的认识。     

Protective Role of miR-34c in Hypoxia by Activating Autophagy through BCL2 Repression

Hypoxia leads to significant cellular stress that has diverse pathological consequences such as cardiovascular diseases and cancers. MicroRNAs (miRNAs) are one of regulators of the adaptive pathway in hypoxia. We identified a hypoxia-induced miRNA, miR-34c, that was significantly upregulated in hypoxic human umbilical cord vein endothelial cells (HUVECs) and in murine blood vessels on day 3 of hindlimb ischemia (HLI). miR-34c directly inhibited BCL2 expression, acting as a toggle switch between apoptosis and autophagy in vitro and in vivo. BCL2 repression by miR-34c activated autophagy, which was evaluated by the expression of LC3-II. Overexpression of miR-34c inhibited apoptosis in HUVEC as well as in a murine model of HLI, and increased cell viability in HUVEC. Importantly, the number of viable cells in the blood vessels following HLI was increased by miR-34c overexpression. Collectively, our findings show that miR-34c plays a protective role in hypoxia, suggesting a novel therapeutic target for hypoxic and ischemic diseases in the blood vessels.     

西双版纳尚勇亚洲象的食物组成与取食生态

于1998—2000在西双版纳国家级自然保护区尚勇子保护区的自然生境中,通过对亚洲象取食植物调查和粪便分析,了解亚洲象的食物组成与取食习性。结果显示,野外跟踪调查共记录有106种植物被亚洲象所取食。其中有83种出现在象的粪便中,这些种类分别属于：禾本科8种（10．0％）、桑科7种（9．9％）、蝶形花科4种（8．4％）、五加科3种（6．6％）、葡萄科3种（5．7％）、夹竹桃科3种（4．6％）、芭蕉科1种（4．2％）、姜科3种（3．7％）、紫金牛科3种（3．6％）、蔷薇科3种（3．6％）、大戟科5种（3．3％）、榆科2种（3．O％）、含羞草科4种（2．9％）13个植物科。根据食物中所占的比率,桑科的榕属（Ficus）、禾本科的竹类（Bambusoideae）、小果野芭蕉（Musa acuminate）和莠竹（Microstegium ciliatum）是亚洲象的主要食物资源。在觅食过程中,亚洲象取食包括乔木、藤本灌木和草本等各种生活型的植物,其中先锋种所占比率（59％）高于后续种;选择性啃食枝条的植物种类（77种）高于牧草式取食的种类（6种）。亚洲象取食植物种类的月变化与月平均温度和月降雨量成负相关,旱季取食植物种类高于雨季。本研究对制定保护区野生动物管理策略,以及解决保护区周边日趋恶化的人象矛盾,具有一定的参考价值。     

Design,synthesis and biological evaluation of novel diosgenin–benzoic acid mustard hybrids with potential anti-proliferative activities in human hepatoma HepG2 cells

To discover new lead compounds with anti-tumour activities, in the present study, natural diosgenin was hybridised with the reported benzoic acid mustard pharmacophore. The in vitro cytotoxicity of the resulting newly synthesised hybrids (8–10, 14a–14f, and 15a–15f) was then evaluated in three tumour cells (HepG2, MCF-7, and HeLa) as well as normal GES-1 cells. Among them, 14f possessed the most potential anti-proliferative activity against HepG2 cells, with an IC₅₀ value of 2.26 µM, which was 14.4-fold higher than that of diosgenin (IC₅₀ = 32.63 µM). Furthermore, it showed weak cytotoxicity against GES-1 cells (IC₅₀ > 100 µM), thus exhibiting good antiproliferative selectivity between normal and tumour cells. Moreover, 14f could induce G0/G1 arrest and apoptosis of HepG2 cells. From a mechanistic perspective, 14f regulated cell cycle-related proteins (CDK2, CDK4, CDK6, cyclin D1 and cyclin E1) as well mitochondrial apoptosis pathway-related proteins (Bax, Bcl-2, caspase 9, and caspase 3). These findings suggested that hybrid 14f serves as a promising anti-hepatoma lead compound that deserves further research.     

淡水湿地浮游病毒的空间分布

在2006年3～7月间,对湖北省内15个营养水平不同的湿地水体中浮游病毒的分布规律开展了大规模研究.采用荧光显微直接计数法测定了浮游病毒丰度,同时还测量水体透明度、水温、pH、总氮、总磷、COD、叶绿素a浓度及活菌数. 结果显示,浮游病毒丰度不但与活菌数和叶绿素a浓度显著相关(P<0.05),而且也与COD和水温极显著相关(P<0.01),这一结果说明有机物浓度和水温分别是决定淡水湿地中浮游病毒空间和时间分布的重要因素. 进一步的分析还表明在富营养化水体中,浮游病毒与活菌数的相关性(P<0.05)高于与叶绿素a浓度的相关性(P>0.05),说明噬菌体(而不是浮游植物病毒)是富营养化水体中浮游病毒的优势种类.     

土壤水分对土壤产生气态氮的厌氧微生物过程的影响

气态氮[一氧化氮(NO)、氧化亚氮(N2O)和氮气(N2)]的释放是土壤氮损失的一种重要途径.硝化和反硝化作用是土壤气态氮损失的主要微生物过程,但是异养硝化作用、共反硝化作用和厌氧氨氧化过程对土壤气态氮损失的贡献尚不清楚.本研究利用15N标记和配对法,结合硝化抑制剂双氰胺(DCD),通过土壤培养试验来量化厌氧条件下各种...