The lived experience of depression: a bottom-up review co-written by experts by experience and academics

We provide here the first bottom-up review of the lived experience of depression, co-written by experts by experience and academics. First-person accounts within and outside the medical field were screened and discussed in collaborative workshops involving numerous individuals with lived experience of depression, family members and carers, representing a global network of organizations. The material was enriched by phenomenologically informed perspectives and shared with all collaborators in a cloud-based system. The subjective world of depression was characterized by an altered experience of emotions and body (feeling overwhelmed by negative emotions, unable to experience positive emotions, stuck in a heavy aching body drained of energy, detached from the mind, the body and the world); an altered experience of the self (losing sense of purpose and existential hope, mismatch between the past and the depressed self, feeling painfully incarcerated, losing control over one's thoughts, losing the capacity to act on the world; feeling numb, empty, non-existent, dead, and dreaming of death as a possible escape route); and an altered experience of time (experiencing an alteration of vital biorhythms, an overwhelming past, a stagnation of the present, and the impossibility of the future). The experience of depression in the social and cultural context was characterized by altered interpersonal experiences (struggling with communication, feeling loneliness and estrangement, perceiving stigma and stereotypes), and varied across different cultures, ethnic or racial minorities, and genders. The subjective perception of recovery varied (feeling contrasting attitudes towards recovery, recognizing recovery as a journey, recognizing one's vulnerability and the need for professional help), as did the experience of receiving pharmacotherapy, psychotherapy, and social as well as physical health interventions. These findings can inform clinical practice, research and education. This journey in the lived experience of depression can also help us to understand the nature of our own emotions and feelings, what is to believe in something, what is to hope, and what is to be a living human being.     

Water column dissolved silica concentration limits microphytobenthic primary production in intertidal sediments

Primary production of microphytobenthos (MPB) contributes significantly to the total production in shallow coastal environments. MPB is a diverse community in which diatoms are usually the main microalgal group. Diatoms require N, P, and other nutrients as with other autotrophs, but in addition require silicate to create their outer cell wall. Therefore, dissolved silica (DSi) might be a potential limiting factor for benthic primary production in areas with reduced freshwater input. To test this hypothesis, a microcosm experiment was conducted using intact sediment cores collected from an intertidal mudflat in the Bay of Cádiz and supplied with increasing concentrations of DSi (0, 5, 10, 25, and 45 μmol · L^?1). After 7 d of enrichment, we determined chlorophyll a and c (Chl a, c) contents, metabolic rates (Net [P_n] and Areal Gross [P_g^A] Production and Light [R_L] and Dark [R_D] Respiration), as well as fluxes of inorganic nutrients across the sediment‐water interface. Chl a and c contents increased significantly with respect to the initial conditions but no differences between treatments were found. Both P_n and P_g^A showed a saturating‐like pattern with silicate concentration, reaching maximum rates at a DSi concentration of 45 μmol · L^?1. The addition of DSi also resulted in an increase of DSi and ammonium uptake by the sediment, which was significantly higher in light than in darkness. Our results clearly show that water column DSi concentrations have a direct impact on benthic primary production, also controlling other related processes such as inorganic nutrient fluxes.     

The effects of grip proximity on perceived local in vitro tendon strain

In vitro tensile loadings were performed on a series of sequentially-shortened canine tendon specimens which had been instrumented with mercury strain gages. The purpose of the experiments was to determine the tendon length necessary to ensure that the perceived local strain was effectively independent of the gripping configuration. The results showed that the mercury strain gage outputs exhibited statistically significant departures from initial (long tendon) values only when the tendons were shortened to lengths of less than about eight diameter multiples.     

Liberation of protoplasts from the yeast-like form of Paracoccidioides brasiliensis by enzymatic treatment

Spherical and osmotically sensitive protoplasts were released from cultures of the yeast-like form of Paracoccidioides basilienisis strain IVIC Pb9 through the action of a mixture of crude enzyme preparations: alpha and beta-glucanases and chitinase, obtained from culture filtrates of Cladosporium resinae, Basidiomycete QM 806 and Streptomyces sp respectively. The highest efficiency of protoplast liberation was achieved when each crude enzyme preparation was used at 1 mg/ml.     

Performance and environmental accounting of nutrient cycling models to estimate nitrogen emissions in agriculture and their sensitivity in life cycle assessment

Purpose

Several models are available in the literature to estimate agricultural emissions. From life cycle assessment (LCA) perspective, there is no standardized procedure for estimating emissions of nitrogen or other nutrients. This article aims to compare four agricultural models (PEF, SALCA, Daisy and Animo) with different complexity levels and test their suitability and sensitivity in LCA.

Methods

Required input data, obtained outputs, and main characteristics of the models are presented. Then, the performance of the models was evaluated according to their potential feasibility to be used in estimating nitrogen emissions in LCA using an adapted version of the criteria proposed by the United Nations Framework Convention on Climate Change (UNFCCC), and other relevant studies, to judge their suitability in LCA. Finally, nitrogen emissions from a case study of irrigated maize in Spain were estimated using the selected models and were tested in a full LCA to characterize the impacts.

Results and discussion

According to the set of criteria, the models scored, from best to worst: Daisy (77%), SALCA (74%), Animo (72%) and PEF (70%), being Daisy the most suitable model to LCA framework. Regarding the case study, the estimated emissions agreed to literature data for the irrigated corn crop in Spain and the Mediterranean, except N₂O emissions. The impact characterization showed differences of up to 56% for the most relevant impact categories when considering nitrogen emissions. Additionally, an overview of the models used to estimate nitrogen emissions in LCA studies showed that many models have been used, but not always in a suitable or justified manner.

Conclusions

Although mechanistic models are more laborious, mainly due to the amount of input data required, this study shows that Daisy could be a suitable model to estimate emissions when fertilizer application is relevant for the environmental study. In addition, and due to LCA urgently needing a solid methodology to estimate nitrogen emissions, mechanistic models such as Daisy could be used to estimate default values for different archetype scenarios.

     

Proteome‐wide search for PP2A substrates in fission yeast

PP2A (protein phosphatase 2A) is a major phosphatase in eukaryotic cells that plays an essential role in many processes. PP2A mutations in Schizosaccharomyces pombe result in defects of cell cycle control, cytokinesis and morphogenesis. Which PP2A substrates are responsible for these changes is not known. In this work, we searched for PP2A substrates in S. pombe using two approaches, 2D‐DIGE analysis of PP2A complex mutants and identification of PP2A interacting proteins. In both cases, we used MS to identify proteins of interest. In the DIGE experiment, we compared proteomes of wild‐type S. pombe, deletion of pta2, the phosphoactivator of the PP2A catalytic subunit, and pab1–4, a mutant of B‐type PP2A regulatory subunit. A total of 1742 protein spots were reproducibly resolved by 2D‐DIGE and 51 spots demonstrated significant changes between PP2A mutants and the wild‐type control. MS analysis of these spots identified 27 proteins that include key regulators of glycerol synthesis, carbon metabolism, amino acid biosyntesis, vitamin production, and protein folding. Importantly, we independently identified a subset of these proteins as PP2A binding partners by affinity precipitation, suggesting they may be direct targets of PP2A. We have validated our approach by demonstrating that phosphorylation of Gpd1, a key enzyme in glycerol biogenesis, is regulated by PP2A and that ability of cells to respond to osmotic stress by synthesizing glycerol is compromised in the PP2A mutants. Our work contributes to a better understanding of PP2A function and identifies potential PP2A substrates.     

Diurnal cortisol rhythms among Latino immigrants in Oregon, USA

ABSTRACT: One of the most commonly used stress biomarkers is cortisol, a glucocorticoid hormone released by the adrenal glands that is central to the physiological stress response. Free cortisol can be measured in saliva and has been the biomarker of choice in stress studies measuring the function of the hypothalamic-pituitary-adrenal axis. Chronic psychosocial stress can lead to dysregulation of hypothalamic-pituitary-adrenal axis function and result in an abnormal diurnal cortisol profile. Little is known about objectively measured stress and health in Latino populations in the United States, yet this is likely an important factor in understanding health disparities that exist between Latinos and whites. The present study was designed to measure cortisol profiles among Latino immigrant farmworkers in Oregon (USA), and to compare quantitative and qualitative measures of stress in this population. Our results indicate that there were no sex differences in average cortisol AUCg (area under the curve with respect to the ground) over two days (AvgAUCg; males = 1.38, females = 1.60; p = 0.415). AUCg1 (Day 1 AUCg) and AvgAUCg were significantly negatively associated with age in men (p < 0.05). AUCg1 was negatively associated with weight (p < 0.05), waist circumference (p < 0.01) and waist-to-stature ratio (p < 0.05) in women, which is opposite to the expected relationship between cortisol and waist-to-stature ratio, possibly indicating hypothalamic-pituitary-adrenal axis dysregulation. Among men, more time in the United States and immigration to the United States at older ages predicted greater AvgAUCg. Among women, higher lifestyle incongruity was significantly related to greater AvgAUCg. Although preliminary, these results suggest that chronic psychosocial stress plays an important role in health risk in this population. (271 words).     

Model-based optimization of antibody galactosylation in CHO cell culture

Exerting control over the glycan moieties of antibody therapeutics is highly desirable from a product safety and batch-to-batch consistency perspective. Strategies to improve antibody productivity may compromise quality, while interventions for improving glycoform distribution can adversely affect cell growth and productivity. Process design therefore needs to consider the trade-off between preserving cellular health and productivity while enhancing antibody quality. In this work, we present a modeling platform that quantifies the impact of glycosylation precursor feeding – specifically that of galactose and uridine – on cellular growth, metabolism as well as antibody productivity and glycoform distribution. The platform has been parameterized using an initial training data set yielding an accuracy of ±5% with respect to glycoform distribution. It was then used to design an optimized feeding strategy that enhances the final concentration of galactosylated antibody in the supernatant by over 90% compared with the control without compromising the integral of viable cell density or final antibody titer. This work supports the implementation of Quality by Design towards higher-performing bioprocesses.     

Characterising the stability of the organic matter during anaerobic digestion: a selective review on the major spectroscopic techniques

Reviews in Environmental Science and Bio/Technology - Digestate landspreading is a key aspect of the circular economy. However, organic matter (OM) stability in digestates is usually either poorly...