福建省直播稻根结线虫病的病原种类鉴定

[目的] 福建省福清市江镜镇与福安市潭溪镇水稻区直播稻苗期分别发生严重的根结线虫病,本研究对其病原物进行形态和分子鉴定,明确病原物种类,以期为福建省直播稻根结线虫病害防控提供理论依据。[方法] 通过根结线虫各虫态形态学特征进行观测;同时对其rDNA-ITS区进行测序,通过贝叶斯法与最大似然法构建了系统发育树来确定种类;利用拟禾本科根结线虫特异性引物Mg-F/Mg-R检测种群。[结果] 根结线虫的雌虫、雄虫和2龄幼虫的形态学特征与拟禾本科根结线虫原始描述种一致;rDNA-ITS区序列长度为576 bp,与GenBank拟禾本科根结线虫种群相似度均达99%以上;系统发育树明确了该根结线虫与拟禾本科根结线虫处于同一分支;特异性引物Mg-F/Mg-R检测进一步明确病原为拟禾本科根结线虫单一种群。[结论] 本研究通过形态与分子特征,明确了在福建直播稻上发现的根结线虫为拟禾本科根结线虫。拟禾本科根结线虫在福建省最早于2011年在政和县小范围水稻田发现,此后未在其他水稻种植区发现。本次在福建直播稻上首次发现大面积的根结线虫为害。随着直播稻的种植面积扩大,拟禾本根结线虫引起的水稻病害可能会成为制约其发展的新问题,应引起足够重视。     

SAXSDom: Modeling multidomain protein structures using small-angle X-ray scattering data

Many proteins are composed of several domains that pack together into a complex tertiary structure. Multidomain proteins can be challenging for protein structure modeling, particularly those for which templates can be found for individual domains but not for the entire sequence. In such cases, homology modeling can generate high quality models of the domains but not for the orientations between domains. Small-angle X-ray scattering (SAXS) reports the structural properties of entire proteins and has the potential for guiding homology modeling of multidomain proteins. In this article, we describe a novel multidomain protein assembly modeling method, SAXSDom that integrates experimental knowledge from SAXS with probabilistic Input-Output Hidden Markov model to assemble the structures of individual domains together. Four SAXS-based scoring functions were developed and tested, and the method was evaluated on multidomain proteins from two public datasets. Incorporation of SAXS information improved the accuracy of domain assembly for 40 out of 46 critical assessment of protein structure prediction multidomain protein targets and 45 out of 73 multidomain protein targets from the ab initio domain assembly dataset. The results demonstrate that SAXS data can provide useful information to improve the accuracy of domain-domain assembly. The source code and tool packages are available at https://github.com/jianlin-cheng/SAXSDom .     

Loss of rice PARAQUAT TOLERANCE 3 confers enhanced resistance to abiotic stresses and increases grain yield in field

Plants frequently suffer from environmental stresses in nature and have evolved sophisticated and efficient mechanisms to cope with the stresses. To balance between growth and stress response, plants are equipped with efficient means to switch off the activated stress responses when stresses diminish. We previously revealed such an off-switch mechanism conferred by Arabidopsis PARAQUAT TOLERANCE 3 (AtPQT3) encoding an E3 ubiquitin ligase, knockout of which significantly enhances resistance to abiotic stresses. To explore whether the rice homologue OsPQT3 is functionally conserved, we generated three knockout mutants with CRISPR-Cas9 technology. The OsPQT3 knockout mutants (ospqt3) display enhanced resistance to oxidative and salt stress with elevated expression of OsGPX1, OsAPX1 and OsSOD1. More importantly, the ospqt3 mutants show significantly enhanced agronomic performance with higher yield compared with the wild type under salt stress in greenhouse as well as in field conditions. We further showed that OsPQT3 expression rapidly decreased in response to oxidative and other abiotic stresses as AtPQT3 does. Taken together, these results show that OsPQT3 is functionally well conserved in rice as an off-switch in stress response as AtPQT3 in Arabidopsis. Therefore, PQT3 locus provides a promising candidate for crop improvement with enhanced stress resistance by gene editing technology.     

基于遥感和GIS的川西绿被时空变化研究

探索出了利用多时相MODIS数据分析绿被时空变化的技术方法,揭示出了川西2002—2008年间绿被的变化特征。建立了绿被提取模型。用其从2002—2008年的多期MODIS影像中提取出川西多期绿被数据。其次,利用GIS技术对2002—2008年间绿被变化,及其与温度、降雨的关系等进行了分析。研究表明:2002年绿被天数在195 d以上的区域有43.3%。终年无绿被的区域有4.3%。西北部植被生长日数短,而东南部生长日数长。2002—2008年间,春季绿被面积变幅最大,秋季最小。最大绿被面积出现在2006年的夏季,最小绿被面积出现在2005年的冬季。平均夏冬绿被面积差占区域面积46.7%。在季节上,绿被面积与温度和降雨量均在0.01的水平上呈显著正相关关系,其相关系数分别为0.82和0.84。该研究成果对植被生长潜力挖掘、农牧生产和生态建设决策等均有重要意义。     

利用免疫抑制小鼠模型检测真菌病毒对黄曲霉菌致病力影响

【目的】构建用于比较黄曲霉（Aspergillus flavus,A. flavus）菌株之间致病力差异的小鼠感染模型,并利用该模型评价真菌病毒AfPV1对宿主A. flavus致病力的影响。【方法】用不同浓度环磷酰胺腹腔注射Institute of Cancer Research （ICR）小鼠,根据白细胞的数量判断小鼠免疫抑制程度;通过滴鼻和尾静脉两种感染方法接种不同浓度的A. flavus孢子量,统计14 d以内小鼠的死亡率,确定A. flavus最佳的孢子接种量;通过小鼠组织的菌落负荷量以及肺部组织的病理观察,确定A. flavus感染是否成功;最后利用该小鼠模型评价真菌病毒AfPV1对寄主A. flavus致病力的影响。【结果】腹腔注射环磷酰胺的浓度为250 mg/kg时,能够达到免疫抑制水平;小鼠组织真菌负荷和病理组织切片观察显示A. flavus成功感染接种的ICR小鼠组织;在滴鼻接种模型中,A. flavus的孢子接种量为40μL（1×10⁶CFU/mL）时比较合适评价A. flavus菌株之间的差异;在尾静脉接种的模型中,A. flavus的孢子...     

饲料脂肪水平对长养殖周期异育银鲫“中科3号”生长和脂代谢的影响

实验以初重为(11.33±0.03) g的异育银鲫(Carassius auratus gibelio)为研究对象,分别投喂脂肪水平为4%(L4)、8%(L8)、12% (L12)、16% (L16)和20% (L20)的5种等氮饲料进行为期340d的长养殖周期实验,以探究饲料脂肪水平对长养殖周期异育银鲫生长性能、消化酶活性和脂代谢的影响。期间共取样5次,生长阶段分为63d(D63,幼鱼期)、110d(D110,养成前期)、223d(D223,越冬期)、275d(D275,越冬后)和340d(D340,养成中后期)。实验结果显示,以增重率为评价指标,幼鱼期D63的异育银鲫适宜脂肪水平为8%,养成前期D110的异育银鲫适宜脂肪水平为12%,而其他生长阶段饲料脂水平对增重率无显著影响。饲料脂肪水平对幼鱼期异育银鲫肠道消化酶活性有显著影响,脂肪酶活性随脂肪水平的升高呈现先降低后升高的趋势,幼鱼期(D63)异育银鲫肠道胰蛋白酶和淀粉酶活性高于越冬期和养成中后期的异育银鲫,表明幼鱼期的异育银鲫对脂肪的利用较低。幼鱼期(D63)异育银鲫脂肪合成相关基因pparγ和fas的表达量饲料脂肪水平升高呈先升高后下降的趋势,且在L8组表达量最高,而脂解基因lpl和cpt1a的表达量在低脂组L4显著低于其他各组。pparγ和cpt1a在越冬后期(D275)的表达量随饲料脂肪水平的升高呈现先上升后下降,而fas表达量在L4组显著高于其他组,表明不同生长阶段异育银鲫对饲料脂肪摄入的响应策略不一致,摄入过高或过低均会导致代谢紊乱。适宜的脂水平(8%—12%)可促进幼鱼期和养成前期异育银鲫的生长,增强脂肪利用率和脂代谢能力,而较大规格的异育银鲫对脂肪的变化不敏感。     

基于云班课的研究生医学分子生物学文献阅读与讨论教学模式的整合与评价

研究生教育注重培养学生的科学研究和创新能力.文献阅读与讨论(literature reading and discussion,LRD)对研究生创新思维和批判性思维的培养发挥积极的作用.然而,在传统的分子生物学课堂上,如何有效地实施大规模的集体LRD是一个巨大的挑战.云班课是一款专门针对教学而设计的免费移动教学APP,...     

猪环状RNA IGF1R促进脂肪细胞分化

环状RNA(circular RNA, circRNA)作为竞争性内源RNA(competitive endogenous RNA, ceRNA)在细胞分化调控中发挥着重要作用。本研究旨在对猪环状RNA IGF1R(circular RNA insulin-like growth factor 1 receptor, circIGF1R)进行鉴定及分析,探明其表达规律,构建猪circIGF1R相关的ceRNA调控网络,并探究其异位表达对小鼠间充质干细胞(C3H10T1/2)成脂分化的调控作用。通过正反向引物PCR、Sanger测序、RNase R酶消化检测和qRT-PCR验证circIGF1R是胰岛素样生长因子1受体(insulin-like growth factor 1 receptor, IGF1R)第二外显子形成的circRNA,它在猪各组织中均有表达,且其表达量在脂肪组织中随日龄增加呈上升趋势;使用miRDB、TargetScan和miRWalk在线软件预测circIGF1R靶基因,运用RNAhybrid软件进行结合位点预测,使用DAVID生物信息功能分析软件对候选靶基因进行GO和KEGG富集分析,运用Cytoscape软件构建ceRNA网络,基于基因表达相关性和预测的靶标关系,绘制了GO和KEGG富集分析及构建了ceRNA网络;双荧光素酶报告基因分析证明circIGF1R及FABP4可与ssc (Sus scrofa chromosome) -miR-133a-5p结合;成功构建circIGF1R过表达载体,在间充质干细胞C3H10T1/2中异位表达,过表达circIGF1R后关键成脂调控因子CEBPα、CEBPβ、FABP4和PPARγ极显著升高(P＜0.01),脂滴数量显著增加。本研究结果证明,circIGF1R在猪脂肪组织中存在,并且可能通过ceRNA机制正调控C3H10T1/2细胞成脂分化,为进一步研究circIGF1R调控猪前体肌内脂肪细胞成脂分化奠定理论基础。     

肿瘤中甲硫氨酸代谢及其相关基因的表达调控

甲硫氨酸(methionine)作为人体必需氨基酸,生理功能多样,在肿瘤代谢重编程过程中具有重要意义。研究发现,多种肿瘤细胞对外源性甲硫氨酸存在依赖性,该效应被称为Hoffman效应。在人体内,甲硫氨酸经甲硫氨酸循环代谢,参与一碳单位代谢、叶酸循环,以及多胺、谷胱甘肽、半胱氨酸和核苷酸等多种物质的合成。肿瘤中常出现甲硫氨酸代谢的改变,并伴随甲硫氨酸代谢相关酶基因表达的异常,其中以甲硫氨酸腺苷转移酶(methionine adenosyltransferase, MAT)相关基因表达改变及甲硫腺苷磷酸化酶(methylthioadenosine phosphorylase,MTAP)基因的缺失最为常见,二者可分别引起甲硫氨酸循环及甲硫氨酸补救合成途径的异常,进而导致甲基供体S-腺苷甲硫氨酸(S-adenosylmethionine, SAM)的生成减少和甲硫腺苷(methylthioadenosine, MTA)的堆积,其与肿瘤的发生、发展和转移等活动密切相关。由甲硫氨酸的代谢改变和代谢酶的基因表达异常,分别衍生出2种不同的治疗策略,即甲硫氨酸限制疗法和靶向治疗。本文将从甲硫氨酸代谢出发,阐述肿瘤中甲硫氨酸依懒性、肿瘤细胞MAT和MTAP相关基因的表达调控,并概述甲硫氨酸相关肿瘤治疗方案的新进展与新问题,为肿瘤治疗方案的进一步探索提供新思路。