Energy coupling mechanisms of MFS transporters

Major facilitator superfamily (MFS) is a large class of secondary active transporters widely expressed across all life kingdoms. Although a common 12‐transmembrane helix‐bundle architecture is found in most MFS crystal structures available, a common mechanism of energy coupling remains to be elucidated. Here, we discuss several models for energy‐coupling in the transport process of the transporters, largely based on currently available structures and the results of their biochemical analyses. Special attention is paid to the interaction between protonation and the negative‐inside membrane potential. Also, functional roles of the conserved sequence motifs are discussed in the context of the 3D structures. We anticipate that in the near future, a unified picture of the functions of MFS transporters will emerge from the insights gained from studies of the common architectures and conserved motifs.     

Long‐term balanced fertilization increases the soil microbial functional diversity in a phosphorus‐limited paddy soil

The influence of long‐term chemical fertilization on soil microbial communities has been one of the frontier topics of agricultural and environmental sciences and is critical for linking soil microbial flora with soil functions. In this study, 16S rRNA gene pyrosequencing and a functional gene array, geochip 4.0, were used to investigate the shifts in microbial composition and functional gene structure in paddy soils with different fertilization treatments over a 22‐year period. These included a control without fertilizers; chemical nitrogen fertilizer (N); N and phosphate (NP); N and potassium (NK); and N, P and K (NPK). Based on 16S rRNA gene data, both species evenness and key genera were affected by P fertilization. Functional gene array‐based analysis revealed that long‐term fertilization significantly changed the overall microbial functional structures. Chemical fertilization significantly increased the diversity and abundance of most genes involved in C, N, P and S cycling, especially for the treatments NK and NPK. Significant correlations were found among functional gene structure and abundance, related soil enzymatic activities and rice yield, suggesting that a fertilizer‐induced shift in the microbial community may accelerate the nutrient turnover in soil, which in turn influenced rice growth. The effect of N fertilization on soil microbial functional genes was mitigated by the addition of P fertilizer in this P‐limited paddy soil, suggesting that balanced chemical fertilization is beneficial to the soil microbial community and its functions.     

Phylogeographic structure and deep lineage diversification of the red alga Chondrus ocellatus Holmes in the Northwest Pacific

A major goal of phylogeographic analysis using molecular markers is to understand the ecological and historical variables that influence genetic diversity within a species. Here, we used sequences of the mitochondrial Cox1 gene and nuclear internal transcribed spacer to reconstruct its phylogeography and demographic history of the intertidal red seaweed Chondrus ocellatus over most of its geographical range in the Northwest Pacific. We found three deeply separated lineages A, B and C, which diverged from one another in the early Pliocene–late Miocene (c. 4.5–7.7 Ma). The remarkably deep divergences, both within and between lineages, appear to have resulted from ancient isolations, accelerated by random drift and limited genetic exchange between regions. The disjunct distributions of lineages A and C along the coasts of Japan may reflect divergence during isolation in scattered refugia. The distribution of lineage B, from the South China Sea to the Korean Peninsula, appears to reflect postglacial recolonizations of coastal habitats. These three lineages do not coincide with the three documented morphological formae in C. ocellatus, suggesting that additional cryptic species may exist in this taxon. Our study illustrates the interaction of environmental variability and demographic processes in producing lineage diversification in an intertidal seaweed and highlights the importance of phylogeographic approaches for discovering cryptic marine biodiversity.     

干预GPR1通路对实验性小鼠脂肪累积的影响

一直以来,肥胖是令人担忧和烦恼的健康问题,可导致包括2型糖尿病在内的代谢综合征发生.与肥胖相关疾病的发病机制是多因子影响的结果,但是,越来越多的证据表明,脂肪组织分泌的细胞因子(脂联素、瘦素、TNF-α等)的改变,以及局部的炎症反应对于这些疾病的发生具有重要作用.Chemerin(也被称为他扎罗汀诱导基因2或者视黄酸受体反应子2),是近年来发现的一种脂肪细胞因子,是G蛋白偶联受体1(GPR1)的配体,在调节代谢、先天免疫等方面具有重要的作用.为了研究Chemerin及其受体GPR1对小鼠脂肪累积的影响,本课题组通过高脂饲料喂养,成功建立小鼠肥胖模型,利用si RNA干扰技术沉默小鼠和分化前3T3-L1细胞中Chemerin或GPR1基因的表达发现:a.Chemerin及其受体GPR1在高脂饲料喂养小鼠的腹股沟脂肪以及肩胛下脂肪中的表达高于正常饲料组;b.沉默C57BL/6小鼠体内Chemerin或GPR1基因的表达后,肝脏以及腹股沟脂肪组织中脂质的累积受到抑制;c.3T3-L1细胞在体外分化成熟过程中,Chemerin和GPR1也呈高表达的趋势,沉默分化前3T3-L1细胞中Chemerin或GPR1基因的表达后,3T3-L1细胞向脂肪细胞的分化受到影响,降低了脂肪细胞中脂质的累积以及与脂质代谢相关基因的表达,改变了成熟脂肪细胞中新陈代谢功能.这些结果提示,Chemerin及其受体GPR1可能在小鼠脂肪累积中具有调控作用.综上所述,Chemerin/GPR1可能是一种调节脂肪组织中脂质累积的潜在信号通路,为肥胖症等代谢紊乱疾病的治疗提供了可能的作用靶点.     

罗汉果花芽分化过程中形态及其激素水平变化特征

采用石蜡切片和酶联免疫法(ELISA)对罗汉果雄性、雌性、两性花芽分化过程的形态和激素水平变化进行观测,为罗汉果开花调控和品种选育提供科学依据。结果表明:(1)罗汉果雄性、雌性、两性花的花芽分化过程均可分为花芽未分化期、花芽分化初期、花序分化期、萼片原基分化期、花瓣原基分化期、雄蕊原基分化期和雌蕊原基分化期7个阶段。雄蕊原基分化期前,3种花芽分化过程无明显差异,各时期形态特征均依次为:茎端呈圆锥状(花芽未分化期)→茎端经半球形变成扁平状(花芽分化初期)→距茎端5~7节位处分化出穗状花序(花序分化期)→小花原基周围形成5个萼片原基(萼片原基分化期)→萼片原基内侧形成5个花瓣原基(花瓣原基分化期)。雄蕊和雌蕊原基分化期,3种花芽分化过程存在明显差异,雄蕊原基内侧出现雌蕊原基后,雄花芽雄蕊原基继续发育成雄蕊,雌蕊原基停滞生长,退为一个小突起;雌花芽雌蕊原基继续发育成雌蕊,雄蕊原基生长缓慢,退化为小花丝;两性花芽雌蕊和雄蕊原基均继续发育,形成外观正常的雌蕊和雄蕊。(2)内源激素脱落酸(ABA)、赤霉素(GAs)和玉米素核苷(ZR)含量在3种花芽分化过程中变化规律相似,即ABA含量在花芽生理分化期降低,花芽形态分化期升高,而GAs和ZR含量则基本保持不变;吲哚乙酸(IAA)含量在3种花芽分化过程中变化存在明显差异,雌花芽IAA含量在花芽生理分化期升高,花芽形态分化期逐渐降低,而雄性和两性花芽的IAA含量则基本保持不变。ABA/GAs、ABA/IAA、ZR/IAA和ZR/GAs激素含量比值在3种花芽分化过程中变化规律相似,ABA/GAs在花芽生理分化期降低,花芽形态分化期升高,而BA/IAA、ZR/IAA和ZR/GAs则基本保持不变。研究认为,罗汉果花芽分化过程经历一个"两性期",高ABA含量和ABA/GAs比值有利于罗汉果花芽分化,IAA可能对罗汉果花性分化具有重要作用。     

棉花纤维发育相关基因GhPRP10的克隆及其功能分析

利用电子序列拼接结合RT-PCR技术,从12DPA(开花后天数)棉纤维中克隆到1个编码富含脯氨酸蛋白(PRPs)基因,命名为GhPRP10(登录号KP036633)。GhPRP10基因开放阅读框为684bp,编码228个氨基酸,其中脯氨酸(Pro)含量为34.6%。序列分析发现GhPRP10蛋白具有N端信号肽和富含脯氨酸区域,属于第一类PRPs。实时荧光定量PCR(RT-PCR)结果显示,GhPRP10在棉纤维组织中优势表达,在纤维发育过程中的表达量呈现先升高后降低的趋势,在18DPA纤维中表达量最高。利用Gateway技术构建植物过量表达载体,转入烟草BY-2悬浮细胞,表型观察和细胞长度测量结果显示,转GhPRP10基因细胞比野生型细胞显著增长。根据该基因的组织表达特征和转基因细胞表型分析,推测GhPRP10基因在纤维伸长和次生壁合成过程中发挥作用。     

丙型肝炎病毒入胞抑制剂的研究进展

丙肝感染是全球性的公共卫生问题之一,目前尚无预防丙肝病毒感染的疫苗,联合应用靶向丙肝不同复制阶段的药物,即所谓的"鸡尾酒"疗法可能会有更好的疗效。丙肝病毒进入宿主细胞的过程是药物干预的重要环节,这个过程是由丙肝病毒的包膜蛋白与宿主因子作用介导的,其中病毒的包膜蛋白包括E1、E2,宿主因子包括硫酸乙酰肝素(Heparan sulfate,HS)、膜蛋白CD81、B族I型清道夫受体(Scavenger receptor class B type I,SR-BI)、两种紧密连接蛋白Occludin(OCLD)和Claudin(CLDN)、低密度脂蛋白受体(Low densitity lipoprotein receptor,LDLR)、树突细胞特异性细胞间黏附分子-3-结合非整合素分子(Dendritic cell-specific ICAM-3-grab-bing nonintegrin,DCSIGN)、肝/淋巴细胞特异性细胞间粘附分子-3-结合整合素分子(Liver/lymph node specific ICAM-3-grabbing integrin,L-SIGN)和转铁蛋白1受体(Transferrin receptor 1,TfR1)等。病毒的包膜蛋白和这些宿主因子都可以作为靶向丙肝入胞抑制剂的作用靶点,许多研究表明丙肝入胞抑制剂作为一种新颖和有发展前景的化合物与作用于复制阶段药物联合应用能够更有效的治疗丙肝。本文综述了自20世纪90年代以来发现的靶点和靶向丙肝病毒进入宿主细胞的化合物。