Structurally distinct recognition motifs in lymphotoxin-beta receptor and CD40 for tumor necrosis factor receptor-associated factor (TRAF)-mediated signaling

Lymphotoxin-beta receptor (LTbetaR) and CD40 are members of the tumor necrosis factor family of signaling receptors that regulate cell survival or death through activation of NF-kappaB. These receptors transmit signals through downstream adaptor proteins called tumor necrosis factor receptor-associated factors (TRAFs). In this study, the crystal structure of a region of the cytoplasmic domain of LTbetaR bound to TRAF3 has revealed an unexpected new recognition motif, 388IPEEGD393, for TRAF3 binding. Although this motif is distinct in sequence and structure from the PVQET motif in CD40 and PIQCT in the regulator TRAF-associated NF-kappaB activator (TANK), recognition is mediated in the same binding crevice on the surface of TRAF3. The results reveal structurally adaptive "hot spots" in the TRAF3-binding crevice that promote molecular interactions driving specific signaling after contact with LTbetaR, CD40, or the downstream regulator TANK.     

小花草玉梅正常和自然变异植株的AP3-3基因研究

野生小花草玉梅(Anemone rivularis var.flore-minore)正常植株和花被片自然变异植株的外观形态差异很大,该研究以二者为材料,利用常规PCR和高效热不对称PCR(Hi-Tail PCR)技术从其正常和变异植株的基因组中各分离得到1个B类基因。序列分析证明,二者隶属于B类MADS-box基因AP3家族的旁系同源基因AP3-3分枝,分别命名为NArAP3-3(正常植株)和VArAP3-3(变异植株)。NArAP3-3基因全长3 795bp,VArAP3-3基因全长3 898bp,二者均含有1个666bp的开放阅读框(ORF),可编码221个氨基酸,具有典型的植物MADS-box基因结构,其编码肽链包含了MADS区、K区、Ⅰ区和C区。对比NArAP3-3和VArAP3-3基因的全长序列,发现VArAP3-3基因比NArAP3-3多了1段49bp的插入,且在ORF序列与NArAP3-3基因相比有4个碱基突变。对二者的全长序列、所编码的221个氨基酸及插入序列的生物信息学分析显示,二者在基因启动子、蛋白质基本性质、结构功能域、二级三级预测结构等方面均有差异,推测这些差异可能是花被片变异产生的原因之一。该研究结果为进一步探索其变异机制奠定了基础。     

Repair process and enzymatic activity associated with induction of shell regeneration in the invasive species Pomacea canaliculata

ABSTRACT

This study investigated the repair process and enzymatic activity responses after induction of shell regeneration in Pomacea canaliculata. The survival rates, height of regenerated shell, and activities of alkaline phosphatase (ALP) and carbonic anhydrase (CA) were investigated and recorded for 15 days. A triangular piece of shell about 8?mm wide was excised from the ventral region of the shell. On the basis of photographs and enzyme assay, it was concluded both yellow-shell apple snails and black-shell apple snails had high survival rates (100%). The regenerated new shell was initially thin, with the wound sealed 5 days after induction of shell regeneration; after that the regenerated shell thickened. Three snails were sampled at 0, 0.5, 1, 2, 3, 5, 10 and 15 days after shell excision for analysis of enzymatic activity of ALP and CA. Trends of the activity of ALP and CA in the mantle were similar. Initially they both showed a decline on the first day, then rose on following days. Activity of ALP declined to a minimum on the first day, and an activity peak in both colour forms appeared on the fifth day (P?<?0.05) and was maintained for the rest of the experiment. The minimum value of CA occurred after 0.5 days, and a significant increase was also observed on the fifth day (P?<?0.05). This study has revealed that apple snails have good shell regeneration abilities, and that ALP and CA probably play a crucial role in shell growth and regeneration.     

土壤优先水流及溶质优先迁移的研究

通过土壤原状土柱和填充土柱实验,研究了土壤优先水流的特征和非吸附性离子Br^-和NO3^-在土壤中的优先迁移。结果表明,土壤优先水流存在优先穿透、穿透曲线不对称性、偶向入渗和拖尾等特征,原状土柱中Br^-标记的优先水流在实验开始后24h出现穿透,穿透时的孔隙体积仅0.04,在原状土柱中以Br^-标记的土壤优先水流占土壤出流总量的26％,所引起的Br^-累积淋出量占总淋出量的86.7％,说明土壤优先水流虽只占出流总量较小的比例,却可造成较大比例的溶质迁移,优先水流可使NO3^－快速向下迁移,在仅1倍孔隙体积时,其出流中可收获投加量的11％,优先水流可使Br^-和NO3^-向土壤较深层次迁移的同时,发生径向扩散。     

Variations of cuticular wax in mulberry trees and their effects on gas exchange and post-harvest water loss

Though mulberry (Morus alba) tree shows great adaptations to various climate conditions, their leaf water status and photosynthesis are sensitive to climate changes. In the current study, seven widely planted mulberry cultivars in Chongqing, Southwest China, were selected to analyze leaf cuticular wax characteristics, gas exchange index, post-harvest leaf water status and their relationships, aiming to provide new theory in screening high resistant mulberry cultivars. Mulberry trees formed rounded cap-type idioblasts on the adaxial leaf surface. Film-like waxes and granule-type wax crystals covered leaf surfaces, varying in crystal density among cultivars. The stomatal aperture on the abaxial surface of cultivars with high wax amount was smaller than that of cultivars with low wax amount. The amount of total wax was negatively correlated with the net photosynthetic rate (P _N), transpiration rate (E) and stomatal conductance (g _s) and positively correlated with the moisture retention capacity. It suggested that both cuticular wax and stomatal factor might be involved in regulating water loss in mulberry leaves under field conditions. The variability in moisture retention capacity and cuticular wax characteristics might be important in evaluating and screening mulberry cultivars for increasing silk quality and silkworm productivity.     

YphC and YsxC GTPases assist the maturation of the central protuberance,GTPase associated region and functional core of the 50S ribosomal subunit

YphC and YsxC are GTPases in Bacillus subtilis that facilitate the assembly of the 50S ribosomal subunit, however their roles in this process are still uncharacterized. To explore their function, we used strains in which the only copy of the yphC or ysxC genes were under the control of an inducible promoter. Under depletion conditions, they accumulated incomplete ribosomal subunits that we named 45S_YphC and 44.5S_YsxC particles. Quantitative mass spectrometry analysis and the 5–6 Å resolution cryo-EM maps of the 45S_YphC and 44.5S_YsxC particles revealed that the two GTPases participate in the maturation of the central protuberance, GTPase associated region and key RNA helices in the A, P and E functional sites of the 50S subunit. We observed that YphC and YsxC bind specifically to the two immature particles, suggesting that they represent either on-pathway intermediates or that their structure has not significantly diverged from that of the actual substrate. These results describe the nature of these immature particles, a widely used tool to study the assembly process of the ribosome. They also provide the first insights into the function of YphC and YsxC in 50S subunit assembly and are consistent with this process occurring through multiple parallel pathways, as it has been described for the 30S subunit.     

Deep sequencing reveals a novel closterovirus associated with wild rose leaf rosette disease

A bizarre virus‐like symptom of a leaf rosette formed by dense small leaves on branches of wild roses (Rosa multiflora Thunb.), designated as ‘wild rose leaf rosette disease’ (WRLRD), was observed in China. To investigate the presumed causal virus, a wild rose sample affected by WRLRD was subjected to deep sequencing of small interfering RNAs (siRNAs) for a complete survey of the infecting viruses and viroids. The assembly of siRNAs led to the reconstruction of the complete genomes of three known viruses, namely Apple stem grooving virus (ASGV), Blackberry chlorotic ringspot virus (BCRV) and Prunus necrotic ringspot virus (PNRSV), and of a novel virus provisionally named ‘rose leaf rosette‐associated virus’ (RLRaV). Phylogenetic analysis clearly placed RLRaV alongside members of the genus Closterovirus, family Closteroviridae. Genome organization of RLRaV RNA (17 653 nucleotides) showed 13 open reading frames (ORFs), except ORF1 and the quintuple gene block, most of which showed no significant similarities with known viral proteins, but, instead, had detectable identities to fungal or bacterial proteins. Additional novel molecular features indicated that RLRaV seems to be the most complex virus among the known genus members. To our knowledge, this is the first report of WRLRD and its associated closterovirus, as well as two ilarviruses and one capilovirus, infecting wild roses. Our findings present novel information about the closterovirus and the aetiology of this rose disease which should facilitate its control. More importantly, the novel features of RLRaV help to clarify the molecular and evolutionary features of the closterovirus.     

油菜菌核病菌生理生态研究

通过试验分析,结果得出,油菜菌核病菌生长温度范围在0～34℃之间,23℃以下菌丝生长速度与温度呈正相关,25℃以上则呈负相关,23～25℃最适宜,菌丝和菌核致死温度分别为45℃和75℃．该菌对酸碱度适应范围很广,PH1～14范围内只在PH_1条件下不能生长,其最适PH值为5～6。病菌利用铵态氮源能力最强,硝态氮源次之,不能利用亚硝态氮;对氨基酸利用能力以精氨酸最强,其次是酪氨酸、天门冬氨酸和谷氨酸,赖氨酸最差。植株内精氨酸和赖氨酸比值大的白菜型油菜“黄鳝籽”病情扩展最快。