Nuclear retention of the lncRNA SNHG1 by doxorubicin attenuates hnRNPC–p53 protein interactions

The protein p53 plays a crucial role in the regulation of cellular responses to diverse stresses. Thus, a major priority in cell biology is to define the mechanisms that regulate p53 activity in response to stresses or maintain it at basal levels under normal conditions. Moreover, further investigation is required to establish whether RNA participates in regulating p53's interaction with other proteins. Here, by conducting systematic experiments, we discovered a p53 interactor—hnRNPC—that directly binds to p53, destabilizes it, and prevents its activation under normal conditions. Upon doxorubicin treatment, the lncRNA SNHG1 is retained in the nucleus through its binding with nucleolin and it competes with p53 for hnRNPC binding, which upregulates p53 levels and promotes p53‐dependent apoptosis by impairing hnRNPC regulation of p53 activity. Our results indicate that a balance between lncRNA SNHG1 and hnRNPC regulates p53 activity and p53‐dependent apoptosis upon doxorubicin treatment, and further indicate that a change in lncRNA subcellular localization under specific circumstances is biologically significant.     

克隆整合有助于狗牙根抵御水淹

尽管国内外开展了大量的克隆整合对克隆植物抵御逆境能力影响的研究, 但整合对植物抵御水淹能力的影响研究仍比较缺乏。该文从克隆整合的角度探讨多年生草本植物狗牙根(Cynodon dactylon)对水淹胁迫的响应。试验模拟了先端分株(相对年幼的分株)分别处于0、5和15 cm三种水淹胁迫环境, 并在每个水淹梯度下实施先端分株与基端分株(相对年长的分株)之间匍匐茎连接或切断处理, 调查水淹一个月后基端分株和先端分株以及整个克隆片段在形态和生理上的表现。研究发现: 切断匍匐茎连接显著降低了狗牙根先端分株的生长, 表现在生物量下降、匍匐茎长度减短和分株数减少等方面; 水淹显著抑制了先端分株的生长, 但对基端分株的生长并未造成显著影响; 在5 cm水淹处理下, 匍匐茎保持连接时, 先端分株和整个克隆片段的生长显著增加; 连接或切断处理在不同水淹梯度下对匍匐茎平均节间长没有显著影响, 对先端分株或基端分株在光化学转化效率上也未表现显著性差异。结果表明: 克隆整合效应促进了狗牙根在水淹胁迫下分株的生长, 并有助于整个克隆片段抵御水淹胁迫。     

三角酵母D—氨基酸氧化酶基因的克隆,测序及表达

利用跨越内含子的ＰＣＲ技术,从三角酵母（Ｔｒｉｇｏｎｏｐｓｉｓｖａｒｉａｂｉｌｉｓ）变种ＦＡ１１０中扩增得到Ｄ氨基酸氧化酶基因（ｄａａｏ）,并通过ＴＡ克隆的方法将其克隆至ｐＧＥＭＴ载体。序列测定结果表明,所得ｄａａｏ基因的５′端内含子已被删除,基因总长度为１０７１ｂｐ,它与Ｔｒｉｇｏｎｏｐｓｉｓｖａｒｉａｂｉｌｉｓ的Ｄ氨基酸氧化酶同源性达９８３％,与Ｆｕｓａｒｉｕｍｓｏｌａｎｉ和Ｒｈｏｄｏｔｏｒｕｌａｇｒａｃｉｌｉｓ的同源性分别是３８９％和３０８％。为提高表达水平,又将此基因转移至高表达载体ｐＥＴ２８ｂ上,在大肠杆菌ＢＬ２１（ＤＥ３）中进行诱导表达。经ＩＰＴＧ诱导,目的蛋白的产生量可占菌体总蛋白量的４６％,分子量约为３８ｋＤ。Ｄ氨基酸氧化酶的活力可达８０２ｕ／Ｌ。     

南京城市公园绿地不同植被类型土壤呼吸的变化

子2007年10月-2008年9月,利用Li-6400便携式光合作用仪配合土壤呼吸气室对南京中山植物园内草坪、疏林和近自然林3种植被类型的土壤呼吸速率的季节变化及其影响因子进行了测定.结果表明:不同植被类型土壤呼吸速率具有明显的季节变化,夏季(8月)较高,近自然林、疏林和草坪类型分别为3.28、4.07和7.58 μmol·m~(-2)·s~(-1),冬季(12月)最低,近自然林、疏林和草坪类型分别为0.82、0.99和1.42 μmol·m~(-2)·s~(-1);不同植被类型的年均土壤呼吸速率有显著差异(P＜0.05),平均土壤呼吸速率大小排序为草坪>疏林>近自然林;不同植被类型的土壤呼吸速率与土壤温度呈显著性指数相关关系,与土壤含水率无显著相关关系;Q_(10)值均随着土层深度的增加而增加;不同植被类型的Q_(10)值存在一定程度的差异,近自然林类型的Q_(10)值大于草坪和疏林类型的Q_(10)值.研究表明,城市如果大量发展草坪可能增加土壤CO_2的排放.

Abstract：

By using Li-6400 portable photosynthetic apparatus connected to soil chamber,the soil respiration rate under three vegetation types(lawn,open woodland,and close-to-nature forest)in Nanjing Zhongshan Botanical Garden was measured from October 2007 to September 2008,with related affecting factors analyzed.The soil respiration rate had obvious seasonal fluctuation,being the highest in summer(August)and the lowest in winter(December).For the close-to-nature forest,open woodland,and lawn,their soil respiration rate in summer was 3.28,4.07,and 7.58μmol·m~(-2)·s~(-1),and that in winter was 0.82,0.99,and 1.42μmol·m~(-2)·s~(-1),respectively.The annual mean soil respiration rate differed significantly with vegetation type(P＜0.05),which was in order of close-to-nature forest＜open woodland＜lawn.The soil respiration rate had significant exponential correlation with soil temperature,but no correlation with soil moisture.The Q_(10) value increased with increasing soil depth,and was larger in close-tonature forest than in open woodland and lawn.Our results indicated that the rapid development of lawn in urban green space could increase the urban soil CO_2 emission.     

拟南芥转录因子GRAS 家族基因群响应渗透和干旱胁迫的初步探索

GRAS家族是一类植物特有的转录调控因子, 已有报道表明该家族基因在植物生长发育和光信号转导过程中具有重要作用。目前在拟南芥(Arabidopsis thaliana)基因组中已鉴定了33个GRAS家族基因。利用功能基因组学和生物信息学手段,通过基因芯片数据挖掘和基因功能预测, 对拟南芥GRAS家族基因在渗透和干旱胁迫过程中的应答模式进行了初步探索, 提出了一类响应渗透胁迫和干旱胁迫的拟南芥GRAS家族基因。以SCL13为例, 利用基因芯片相关性和GO分析, 对其在渗透胁迫信号转导过程中可能的调控机制进行了预测和分析。这一研究将为阐明GRAS家族基因参与水分胁迫的分子机制提供新的思路, 同时也为植物抗逆分子育种提供候选基因。     

‘Tethering’ fragment-based drug discovery to identify inhibitors of the essential respiratory membrane protein type II NADH dehydrogenase

Energy generation is a promising area of drug discovery for both bacterial pathogens and parasites. Type II NADH dehydrogenase (NDH-2), a vital respiratory membrane protein, has attracted attention as a target for the development of new antitubercular and antimalarial agents. To date, however, no potent, specific inhibitors have been identified. Here, we performed a site-directed screening technique, tethering-fragment based drug discovery, against wild-type and mutant forms of NDH-2 containing engineered active-site cysteines. Inhibitory fragments displayed IC₅₀ values between 3 and 110?μM against NDH-2 mutants. Possible binding poses were investigated by in silico modelling, providing a basis for optimisation of fragment binding and improved potency against NDH-2.     

菜用和观赏甘薯种质资源遗传多样性分析

为了发掘菜用和观赏甘薯优异种质资源,通过对国家种质徐州甘薯试管苗库中1000余份资源材料进行鉴定,筛选了96份优异种质。利用30对SSR引物对入选材料进行了遗传多样性和群体结构分析,明确了这些材料遗传差异;并对入选材料12个表型质量性状进行主成分和聚类分析。结果表明:扩增的总条带数为275条,其中多态性条带为269条,多态率97.8%;利用DPS软件计算入选材料间的Nei72遗传距离为0.15~0.76,平均遗传距离0.66;群体结构分为3个组群,与分子标记聚类结果相似,表明入选材料有较大的遗传差异性;表型质量性状主成分分析得到5个主要成分,其累计贡献率达到80.50%;利用表型质量性状,可聚为8个组群。本研究通过分子标记与表型质量性状分析为下一步杂交选育菜用和观赏甘薯新品种提供了亲本选择信息。     

低氧及酸化胁迫对大黄鱼幼鱼离子调节与鳃组织结构的影响

为探讨大黄鱼幼鱼在低氧及酸化胁迫下机体离子调节情况,本研究探讨了低氧(溶解氧量DO 3.5 mg·L-1,pH 8.1)、酸化(DO 7.0 mg·L-1,pH 7.35)以及低氧酸化协同胁迫(DO3.5 mg·L-1,pH 7.35)对大黄鱼幼鱼鳃组织结构以及离子调节相关生理指标的影响.结果 表明:低氧胁迫下,大黄鱼...     

Research progress on the effects of soil erosion on vegetation

The relationship between vegetation and soil erosion deserves attention due to its scientific importance and practical applications. A great deal of information is available about the mechanisms and benefits of vegetation in the control of soil erosion, but the effects of soil erosion on vegetation development and succession is poorly documented. Research shows that soil erosion is the most important driving force for the degradation of upland and mountain ecosystems. Soil erosion interferes with the process of plant community development and vegetation succession, commencing with seed formation and impacting throughout the whole growth phase and affecting seed availability, dispersal, germination and establishment, plant community structure and spatial distribution. There have been almost no studies on the effects of soil erosion on seed development and availability, of surface flows on seed movement and redistribution, and their influences on soil seed bank and on vegetation establishment and distribution. However, these effects may be the main cause of low vegetation cover in regions of high soil erosion activity and these issues need to be investigated. Moreover, soil erosion is not only a negative influence on vegetation succession and restoration, but also a driving force of plant adaptation and evolution. Consequently, we need to study the effects of soil erosion on ecological processes and on development and regulation of vegetation succession from the points of view of pedology and vegetation, plant and seed ecology, and to establish an integrated theory and technology for deriving practical solutions to soil erosion problems.