血清miR-21 及AFP 在大鼠肝癌发生过程中的动态表达比较分析

目的:分析血清miR-21在肝癌发生过程中的表达水平并将其与传统肝癌血清标志物甲胎蛋白(AFP)比较,探索其成为肝癌早期诊断血清标志物的可能性。方法:二乙基亚硝胺(DENA)腹腔注射诱导建立大鼠肝癌模型,建模过程中收集造癌各个阶段的血清。Realtime-PCR检测血清miR-21的表达情况,ELISA法检测血清AFP水平。结果:与正常组及纤维化期大鼠相比,miR-21在肝硬化期、肝癌早期、肝癌晚期的大鼠血清均有不同程度上调(P<0.05),AFP在肝癌早、晚期的大鼠血清明显上调(P<0.05);与肝硬化期大鼠比较,肝癌早、晚期大鼠体内的miR-21表达显著上调(P<0.05),AFP在肝癌早期、肝癌晚期均显著上调(P<0.05)。结论:血清miR-21参与了肝癌发生的过程,对于肝癌发生的各个阶段均有很大的指示作用,可能作为肝癌预防和早期诊断的一个潜在标志物。     

Bacterial community in cold and alkaline environments of Hoh Xil basin in Qinghai–Tibet Plateau and isolation of potential sources of microbiota

The Hoh Xil basin is the largest Cenozoic sedimentary basin in the Qinghai–Tibet Plateau (QTP) with an average altitude of above 5000 m. It is also the coldest region in the QTP. However, due to the difficulty of sample collection caused by the harsh natural environment, a limited number of studies have been conducted on soil microorganisms in this region. We used culture-dependent and independent methods to investigate the bacterial communities in desert soil (n1), saline–alkali land (n2), saline–alkali wetland (n3), and soda lake sediment (n4). The results showed distinct bacterial communities between different environmental types. We found that the Chao1 and Shannon diversity indices of n1 were significantly lower than those of n4 (P < 0.05). At the phylum level, all samples were dominated by representatives of Proteobacteria, Bacteroidetes, and Actinobacteria, which were similar to the findings of previous studies on the desert soil in the same region. Moreover, we identified 10 strains of bacteria from 109 isolates, most of which belonged to Pseudomonas (90.8%). The growth of the isolate k9 was optimal at a high pH value (pH 10.0) and a low temperature (5 °C), and this stain could produce extracellular enzyme (alkaline phosphatase, acid phosphatase, and naphthol-AS-BI-phosphohydrolase) under alkaline (pH 10) and cold (5 °C) condition. These results demonstrate the diversity of bacteria in the Hoh Xil basin and identify potential psychrophilic and alkaliphilic bacteria with multiple types of extracellular enzyme activity.     

Anatomical traits associated with absorption and mycorrhizal colonization are linked to root branch order in twenty-three Chinese temperate tree species

* Different portions of tree root systems play distinct functional roles, yet precisely how to distinguish roots of different functions within the branching fine-root system is unclear. * Here, anatomy and mycorrhizal colonization was examined by branch order in 23 Chinese temperate tree species of both angiosperms and gymnosperms forming ectomycorrhizal and arbuscular-mycorrhizal associations. * Different branch orders showed marked differences in anatomy. First-order roots exhibited primary development with an intact cortex, a high mycorrhizal colonization rate and a low stele proportion, thus serving absorptive functions. Second and third orders had both primary and secondary development. Fourth and higher orders showed mostly secondary development with no cortex or mycorrhizal colonization, and thus have limited role in absorption. Based on anatomical traits, it was estimated that c. 75% of the fine-root length was absorptive, and 68% was mycorrhizal, averaged across species. * These results showed that: order predicted differences in root anatomy in a relatively consistent manner across species; anatomical traits associated with absorption and mycorrhizal colonization occurred mainly in the first three orders; the single diameter class approach may have overestimated absorptive root length by 25% in temperate forests.     

Growth period QTL-allele constitution of global soybeans and its differential evolution changes in geographic adaptation versus maturity group extension

Soybean (Glycine max (L.) Merr.) has been disseminated globally as a photoperiod/temperature-sensitive crop with extremely diverse days to flowering (DTF) and days to maturity (DTM) values. A population with 371 global varieties covering 13 geographic regions and 13 maturity groups (MGs) was analyzed for its DTF and DTM QTL-allele constitution using restricted two-stage multi-locus genome-wide association study (RTM-GWAS). Genotypes with 20 701 genome-wide SNPLDBs (single-nucleotide polymorphism linkage disequilibrium blocks) containing 55 404 haplotypes were observed, and 52 DTF QTLs and 59 DTM QTLs (including 29 and 21 new ones) with 241 and 246 alleles (two to 13 per locus) were detected, explaining 84.8% and 74.4% of the phenotypic variance, respectively. The QTL-allele matrix characterized with all QTL-allele information of each variety in the global population was established and subsequently separated into geographic and MG set submatrices. Direct comparisons among them revealed that the genetic adaptation from the origin to geographic subpopulations was characterized by new allele/new locus emergence (mutation) but little allele exclusion (selection), while that from the primary MG set to emerged early and late MG sets was characterized by allele exclusion without allele emergence. The evolutionary changes involved mainly 72 DTF and 71 DTM alleles on 28 respective loci, 10–12 loci each with three to six alleles being most active. Further recombination potential for faster maturation (12–21 days) or slower maturation (14–56 days) supported allele convergence (recombination) as a constant genetic factor in addition to migration (inheritance). From the QTLs, 44 DTF and 36 DTM candidate genes were annotated and grouped respectively into nine biological processes, indicating multi-functional DTF/DTM genes are involved in a complex gene network. In summary, we identified QTL-alleles relatively thoroughly using RTM-GWAS for direct matrix comparisons and subsequent analysis.     

“三生”空间视角下土地利用转型的生态环境效应及驱动力——以甘肃省为例

中国社会经济快速转型背景下土地利用变化所引发的环境问题被广泛关注。以土地利用现状遥感监测数据和统计资料为数据源,借助ArcGIS和SIMCA-P软件平台,基于"三生"空间视角,通过生态环境质量指数测度了1980—2018年甘肃省土地利用转型的生态环境效应,并运用偏最小二乘法揭示生态环境质量演变的驱动机制。研究发现:(1)"三生"空间结构演化和地域分异显著。生产、生活空间集中分布于河西走廊、陇中和陇东黄土高原并呈扩张态势;生态空间主要分布于陇南山地、甘南高原、祁连山地和河西走廊以北地带且整体呈缩减趋势;生产、生活空间的增长源于对生态空间的侵占。(2)生态环境质量改善和恶化趋势并存,整体上经历了先下降后上升的"U"形演化过程;空间上呈"东南高-西北低"的分布特征,空间格局演化具有明显的集聚性。(3)生态建设、科技进步等对生态环境改善具有明显的促进作用;而人口增加、社会消费水平提升在一定程度上加剧了生态环境压力;对外贸易对生态环境的影响具有双面性。     

不同浓度有机物对雷公藤不定根生长和次生代谢产物含量的影响

以NT为基本培养基,雷公藤(Tripterygium wilfordii)不定根为材料,研究了肌醇、VB1、烟酸、VB6、甘氨酸、叶酸、生物素等有机物质对雷公藤不定根生长及其次生代谢产物雷公藤甲素和总生物碱含量的影响。结果表明:NT培养基中原有浓度的肌醇、VB1含量即可使雷公藤不定根生长量、雷公藤甲素含量、总生物碱含量及产量达到最大值。在添加的其他有机物中,添加1 mg/L烟酸、1 mg/L VB6和5 mg/L甘氨酸适合不定根的生长;添加0.5 mg/L烟酸、0.5 mg/L生物素、1 mg/L VB6、1 mg/L甘氨酸和1 mg/L叶酸适合雷公藤甲素的积累;添加0.5 mg/L甘氨酸、1 mg/L VB6、1 mg/L叶酸和1 mg/L生物素则适合不定根中雷公藤总生物碱的合成。     

MiR-181a-5p promotes neural stem cell proliferation and enhances the learning and memory of aged mice

Hippocampal neural stem cell (NSC) proliferation is known to decline with age, which is closely linked to learning and memory impairments. In the current study, we found that the expression level of miR-181a-5p was decreased in the hippocampal NSCs of aged mice and that exogenous overexpression of miR-181a-5p promoted NSC proliferation without affecting NSC differentiation into neurons and astrocytes. The mechanistic study revealed that phosphatase and tensin homolog (PTEN), a negative regulator of the AKT signaling pathway, was the target of miR-181a-5p and knockdown of PTEN could rescue the impairment of NSC proliferation caused by low miR-181a-5p levels. Moreover, overexpression of miR-181a-5p in the dentate gyrus enhanced the proliferation of NSCs and ameliorated learning and memory impairments in aged mice. Taken together, our findings indicated that miR-181a-5p played a functional role in NSC proliferation and aging-related, hippocampus-dependent learning and memory impairments.     

Pygo2 expands mammary progenitor cells by facilitating histone H3 K4 methylation

Recent studies have unequivocally identified multipotent stem/progenitor cells in mammary glands, offering a tractable model system to unravel genetic and epigenetic regulation of epithelial stem/progenitor cell development and homeostasis. In this study, we show that Pygo2, a member of an evolutionarily conserved family of plant homeo domain–containing proteins, is expressed in embryonic and postnatal mammary progenitor cells. Pygo2 deficiency, which is achieved by complete or epithelia-specific gene ablation in mice, results in defective mammary morphogenesis and regeneration accompanied by severely compromised expansive self-renewal of epithelial progenitor cells. Pygo2 converges with Wnt/β-catenin signaling on progenitor cell regulation and cell cycle gene expression, and loss of epithelial Pygo2 completely rescues β-catenin–induced mammary outgrowth. We further describe a novel molecular function of Pygo2 that is required for mammary progenitor cell expansion, which is to facilitate K4 trimethylation of histone H3, both globally and at Wnt/β-catenin target loci, via direct binding to K4-methyl histone H3 and recruiting histone H3 K4 methyltransferase complexes.     

水洞沟12号地点的古环境研究

水洞沟遗址12号地点(SDG12)是一处以细石叶技术为主的旧石器时代末期文化,其文化层埋藏于边沟河Ⅱ级阶地中上部。地层时代从距今4.7万年至1.1万年左右,文化层时代为距今约1.1万年,处于更新世与全新世的过渡时期,略经流水改造,为原地埋藏。孢粉组合特征显示在整个地层发育期内该地区是以麻黄属+藜科+霸王属+蒿属+禾本科组合为主的植被类型,为气候比较干旱-半干旱荒漠草原植被景观。在SDG12地点文化层堆积时期,气候相对暖湿,附近尚生长着沼生植物和榆、栎、桦等温带落叶阔叶乔木,为稀树荒漠草原环境。SDG12地点的古人类活动及古环境特征的分析对了解水洞沟文化的发展与传承有着重要的意义,同时也为中国北方细石叶文化研究提供了确切的地层和材料。