大渡河上游不同林龄云杉人工林与原始林下地表苔藓层片结构与物种组成

为评估在人工林早期发育过程中地表苔藓层片物种组成和结构的演变趋势, 选择四川省金川县507林场4–30年林龄的5块云杉(Picea asperata)人工林和1块300年岷江冷杉(Abies faxoniana)原始林, 开展了地表苔藓植物调查。采用方差分析法(ANOVA)对苔藓植物特征参数进行差异性检验, 采用Sørensen群落相似性系数比较了苔藓群落β多样性差异。结果表明: (1)云杉人工林较原始林地表苔藓物种丰富度高。年轻的人工林(<16年)较中龄林(21–30年)地表有更多的苔藓种类; (2)原始林较人工林有更高的地表苔藓植物盖度、密度、平均高度和厚度, 而不同林龄的人工林之间在苔藓植物层片盖度和密度上并没有表现出统计学意义上的差异(P>0.05), 但地表苔藓优势种及次优势种组成具有较明显的差异; (3)人工林与原始林地表苔藓共有种具有明显的喜光耐旱特性, 4年生未成林地段与原始林共有种数最多, 为19种; (4)原始林下地表24种苔藓植物中, 除Rhytidium rugosum外, 23种在云杉人工林早期发育过程中存在。在人工林发育过程中地表苔藓物种替代明显, 替代率随林龄呈增加趋势(0.24–0.60), 有明显的物种替代现象发生。综合分析表明: (1) 本文所研究的4–30年的云杉人工林发育过程中地表苔藓结构与多样性并没有表现出预期的恢复趋势, 大多数土著苔藓种群还未能有效恢复; (2)要恢复重建林地后演替阶段的苔藓种群结构和多样性, 不仅需要在采伐和造林过程中减少对土壤的扰动以保护地表微生境, 还应在云杉人工林处于16–20年林龄, 地表苔藓植物丰富度发生显著衰退时进行合理疏伐。     

Spindle-view系统在猪卵母细胞去核中的应用

应用Spindle-view对体外成熟培养36、42、44和48h的猪体外成熟卵母细胞减数分裂纺锤体进行去核操作,并与传统去核方法(McGrath-Solter去核法,挤压去核法)相比较,结果表明:①在42~48h之间利用Spindle-view得到的猪卵纺锤体影像与极体的相对位置没有明显的变化;②Spindle-view适合用于猪体外成熟卵母细胞减数分裂纺锤体的观察及去核;去核效率与其他两种方法相比差异极显著(95.5%,42.1%,74.2%,P<0.01);③纺锤体成像是否清晰可用于猪卵母细胞的质量监控。     

Evolutionary Genomics of Weedy Rice in the USA

Red rice is an interfertiie, weedy form of cultivated rice (Oryza sativa L.) that competes aggressively with the cropin the southern US, reducing yields and contaminating harvests. No wild Oryza species occur In North America andthe weed has been proposed to have evolved through multiple mechanisms, including "de-domestication" of UScrop cultivars, accidental introduction of Asian weeds, and hybridization between US crops and Asian wild/weedyOryza strains. The phenotype of US red rice ranges from "crop mimics", which share some domestication traitswith the crop, to strains closely resembling Asian wild Oryza species. Assessments of genetic diversity haveindicated that many weed strains are closely related to Asian taxa (including indica and aus rice varieties, whichhave never been cultivated in the US, and the Asian crop progenitor O. rufipogon), whereas others show geneticsimilarity to the tropical japonica varieties cultivated in the southern US. Herein, we review what is known aboutthe evolutionary origins and genetic diversity of US red rice and describe an ongoing research project to furthercharacterize the evolutionary genomics of this aggressive weed.     

生物净化废气技术的进展

生物技术以其能在常温常压下将污染物降解为无毒无害的简单物质、无二次污染、运行费用低等优点,目前已应用于许多废气处理,并已经形成了一套关于可生化气体的净化原理和工业应用经验的重要体系。文中介绍了生物技术处理污水处理厂、养殖场排放的恶臭气体、工厂排放的硫化物的发展,并分析了解决生物膜堵塞的途径,以及分子生物学在废气生物处理中的应用研究,提出生物净化废气技术的发展方向,期待该技术在国内能得到更广泛的应用。     

Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening

Systematic identification of direct protein-protein interactions is often hampered by difficulties in expressing and purifying the corresponding full-length proteins. By taking advantage of the modular nature of many regulatory proteins, we attempted to simplify protein-protein interactions to the corresponding domain-ligand recognition and employed peptide arrays to identify such binding events. A group of 12 Src homology (SH) 3 domains from eight human proteins (Swiss-Prot ID: SRC, PLCG1, P85A, NCK1, GRB2, FYN, CRK) were used to screen a peptide target array composed of 1536 potential ligands, which led to the identification of 921 binary interactions between these proteins and 284 targets. To assess the efficiency of the peptide array target screening (PATS) method in identifying authentic protein-protein interactions, we examined a set of interactions mediated by the PLCgamma1 SH3 domain by coimmunoprecipitation and/or affinity pull-downs using full-length proteins and achieved a 75% success rate. Furthermore, we characterized a novel interaction between PLCgamma1 and hematopoietic progenitor kinase 1 (HPK1) identified by PATS and demonstrated that the PLCgamma1 SH3 domain negatively regulated HPK1 kinase activity. Compared to protein interactions listed in the online predicted human interaction protein database (OPHID), the majority of interactions identified by PATS are novel, suggesting that, when extended to the large number of peptide interaction domains encoded by the human genome, PATS should aid in the mapping of the human interactome.     

Lesion specificity in the base excision repair enzyme hNeil1: modeling and dynamics studies

Base excision repair (BER) is the major pathway employed to excise oxidized DNA lesions. Human Neil1, a versatile glycosylase in the BER pathway, repairs a diverse array of oxidative lesions; however, the most prevalent, 8-oxo-7,8-dihydroguanine (8-oxoG), is only weakly excised. The structural origin of hNeil1's ability to repair a variety of lesions but not 8-oxoG is a model system for connecting enzyme structure and lesion-recognition specificity. To elucidate structural properties determining hNeil1's substrate specificities, we have investigated it in complex with two pairs of representative well-repaired substrates: the R- and S-spiroiminodihydantoin (Sp) stereoisomers, nonplanar further oxidation products of guanine, and the 5R,6S- and 5S,6R-thymine glycol (Tg) stereoisomers, the most prevalent oxidative lesions of thymine. We also investigate the poorly repaired 8-oxoG. We employed molecular modeling and 10 ns molecular dynamics (MD) simulations. The results of our investigations provide structural explanations for the ability of hNeil1 to excise a variety of oxidative lesions: they possess common chemical features, namely, a pyrimidine-like ring and shared hydrogen bond donor-acceptor properties, which allow the lesions to fit well in the binding pocket, which is somewhat flexible. However, the planar 8-oxoG is not as well accommodated in the shallow and comparatively cramped recognition pocket; it has fewer hydrogen bonding interactions with the enzyme and a solvent exposed six-membered ring, consistent with its poor repair susceptibility by this enzyme.     

Glycoprotein microarrays with multi-lectin detection: unique lectin binding patterns as a tool for classifying normal, chronic pancreatitis and pancreatic cancer sera

Pancreatic cancer is the fourth leading cause of cancer-related death in the United States, with a 5-year survival rate of less than 4%. Effective early detection and screening are currently not available, and tumors are typically diagnosed at a late stage, frequently after metastasis. Existing clinical markers of pancreatic cancer lack specificity, as they are also found in inflammatory diseases of the pancreas and biliary tract. In the work described here, naturally occurring glycoproteins were enriched by using lectin affinity chromatography and then further resolved by nonporous reversed-phase chromatography. Glycoprotein microarrays were then printed and probed with a variety of lectins to screen glycosylation patterns in sera from normal, chronic pancreatitis, and pancreatic cancer patients. Ten normal, 8 chronic pancreatitis, and 6 pancreatic cancer sera were investigated. Data from the glycoprotein microarrays were analyzed using bioinformatics approaches including principal component analysis (PCA) and hierarchical clustering (HC). Both normal and chronic pancreatitis sera were found to cluster close together, although in two distinct groups, whereas pancreatic cancer sera were significantly different from the other two groups. Both sialylation and fucosylation increased as a function of cancer on several proteins including Hemopexin, Kininogen-1, Antithrombin-III, and Haptoglobin-related protein, whereas decreased sialylation was detected on plasma protease C1 inhibitor. Target alterations on glycosylations were verified by lectin blotting experiments and peptide mapping experiments using microLC-ESI-TOF. These altered glycan structures may have utility for the differential diagnosis of pancreatic cancer and chronic pancreatitis and identify critical differences between biological samples from patients with different clinical conditions.     

Identification and characterization of potent and selective inhibitors targeting protein tyrosine phosphatase 1B (PTP1B)

Protein tyrosine phosphatase 1B (PTP1B) plays an important role in the negative regulation of insulin and leptin signaling. The development of small molecular inhibitors targeting PTP1B has been validated as a potential therapeutic strategy for Type 2 diabetes (T2D). In this work, we have identified a series of compounds containing dihydropyridine thione and particular chiral structure as novel PTP1B inhibitors. Among those, compound 4b showed moderate activity with IC₅₀ value of 3.33 μM and meanwhile with good selectivity (>30-fold) against TCPTP. The further MOA study of PTP1B demonstrated that compounds 4b is a substrate-competitive inhibitor. The binding mode analysis suggested that compound 4b simultaneously occupies the active site and the second phosphotyrosine (pTyr) binding site of PTP1B. Furthermore, the cell viability assay of compound 4b showed tolerable cytotoxicity in L02 cells, thus 4b may be prospectively used to further in vivo study.     

三种杀虫剂对皂角豆象的致死效果

【目的】筛选对皂角豆象Megabruchidius dorsalis(Fahraeus)致死效果最好的杀虫剂。【方法】采用氟啶脲、毒死蜱和灭多威3种常用类型杀虫剂的常规剂量对皂角豆象成虫、初孵幼虫和卵进行防治试验。【结果】3种杀虫剂都可以有效的杀死皂角豆象初孵幼虫,接触氟啶脲、毒死蜱和灭多威3种杀虫剂后皂角豆象幼虫72 h死亡率分别为96.59%、100.00%和100.00%,灭多威和毒死蜱对皂角豆象成虫致死效果72 h为100.00%,灭多威对皂角豆象卵的效果最为明显,致死率达94.38%,氟啶脲对皂角豆象卵和成虫无明显致死效果。【结论】灭多威对皂角豆象的致死效果最好。