PROTS: a fragment based protein thermo-stability potential

Designing proteins with enhanced thermo-stability has been a main focus of protein engineering because of its theoretical and practical significance. Despite extensive studies in the past years, a general strategy for stabilizing proteins still remains elusive. Thus effective and robust computational algorithms for designing thermo-stable proteins are in critical demand. Here we report PROTS, a sequential and structural four-residue fragment based protein thermo-stability potential. PROTS is derived from a nonredundant representative collection of thousands of thermophilic and mesophilic protein structures and a large set of point mutations with experimentally determined changes of melting temperatures. To the best of our knowledge, PROTS is the first protein stability predictor based on integrated analysis and mining of these two types of data. Besides conventional cross validation and blind testing, we introduce hypothetical reverse mutations as a means of testing the robustness of protein thermo-stability predictors. In all tests, PROTS demonstrates the ability to reliably predict mutation induced thermo-stability changes as well as classify thermophilic and mesophilic proteins. In addition, this white-box predictor allows easy interpretation of the factors that influence mutation induced protein stability changes at the residue level.     

红外吸收法检测西林瓶包装冻干制品中的氧含量

目的应用HSA-P型激光检漏仪建立西林瓶包装冻干制品中氧气含量的测定方法。方法考察冻干制品中氧含量测定的操作条件:标准样瓶对仪器的校准;氮气吹扫前后样品中氧含量值的比较;不同纯度氮气吹扫标准样瓶后的氧含量值的变化。深化红外吸收法在测定西林瓶包装冻干疫苗中氧含量的应用。结果将该方法用于检测A群C群脑膜炎球菌多糖疫苗400批、麻疹减毒活疫苗86批、乙型脑炎减毒活疫苗46批,氧含量分别为1.64%±1.99%、1.36%±1.64%和0.99%±1.58%。结论该法测定冻干疫苗中的氧含量具有灵敏度高、速度快和易操作的优点,为冻干制品真空度的测定提供了定量检测方法。     

Systematic research on the pretreatment of peptides for quantitative proteomics using a C18 microcolumn

Reversed phase microcolumns have been widely used for peptide pretreatment to desalt and remove interferences before tandem LC–MS in proteomics studies. However, few studies have characterized the effects of experimental parameters as well as column characteristics on the composition of identified peptides. In this study, several parameters including the concentration of ACN in washing buffer, the microcolumn's purification effect, the peptide recovery rate, and the dynamic‐binding capacity were characterized in detail, based upon stable isotope labeling by amino acids in a cell culture quantitative approach. The results showed that peptide losses can be reduced with low ACN concentration in washing buffers resulting in a recovery rate of approximately 82%. Furthermore, the effects of ACN concentration and loading amount on the properties of identified peptides were also evaluated. We found that the dynamic‐binding capacity of the column was approximately 26 μg. With increased loading amounts, more hydrophilic peptides were replaced by hydrophobic peptides.     

青藏高原东南部察隅河流域种子植物区系研究

在野外植被调查、标本采集和资料查询整理的基础上,汇总了察隅河流域种子植物名录,并对流域内植物物种的组成、优势科属、区系地理成分及性质进行分析。运用R语言在属水平上与其周边16个地区的植物区系进行聚类及主成分分析,探讨察隅河流域种子植物区系与其他区系之间的关系。结果表明:(1)察隅河流域共含种子植物138科、689属、2771种(含变种),其中裸植子物4科12属56种,被子植物134科677属2715种,被子植物中双子叶植物112科531属2270种占绝对优势。(2)区内地理成分联系广泛,科的区系划分除世界分布类型外,热带分布型53科(55.21%),温带分布型43科(44.79%);属的区系划分中所有类型均有分布,温带分布型396属(62.07%),热带分布型230属(36.05%);属的分布型与科相比具有更明显的温带性质;植物种类丰富度高但特有成分低,无特有科,仅含12特有属。(3)流域内植被垂直地带性分布较为明显,保留了较多古老孑遗植物,如裸子植物的西藏红豆杉(Taxus wallichiana)、察隅冷杉(Abies chayuensis)和云南松(Pinus yunnanensis)等;由于青藏高原的上升运动,成为杜鹃花属(Rhododendron)、虎耳草属(Saxifraga)、龙胆属(Gentiana)和报春花属(Primula)等新生高山植物区系成分分化繁衍的摇篮。(4)察隅河植物区系属喜马拉雅山南侧热带成分向温带成分过渡的区系性质,与珠峰自然保护区植物区系更为相似。