温室秸秆不同还田量条件下DSSAT-CROPGRO-Tomato模型的调参与验证

为了探讨番茄生长模拟模型DSSAT-CROPGRO-Tomato能否准确模拟秸秆还田条件下北方日光温室番茄的生长发育和产量形成过程,基于2016年和2018年温室番茄小区试验数据对模型进行验证。试验设置4个秸秆还田量处理,分别为0(S₀)、1.5×10⁴(S₁)、3×10⁴(S₂)和4.5×10⁴kg·hm^-2(S₃)。利用GLUE参数估计模块获得不同方案相应的作物遗传参数,通过分析和对比番茄物候期、鲜果产量、最大叶面积指数、土壤水分、土壤无机态氮和地上干物质量的实测值与模拟值,验证模型模拟精度并确定最优方案。结果表明,参数PODUR(最优条件下最终果实负载所需光热时长)和SLAVR(比叶面积)的变异系数较大,分别为28.53%和14.13%。模型在2016年所有处理为参数估计方案时模拟精度最高,其ARE和nRMSE分别为10.33%和7.12%。模型对温室土壤水分、番茄生长和产量的模拟精度较高。留一交叉验证法体现模型对温室番茄产量总体误差在18.68%~21.95%。说明CROPGRO-Tomato模型可以较准确模拟秸秆不同还田量条件下沈阳日光温室番茄生长和产量形成过程。     

含半胱氨酸的天冬氨酸蛋白水解酶(caspase-1)对猪伪狂犬病毒复制的影响

猪伪狂犬病是伪狂犬病毒(Pseudorabies virus,PRV)感染引起的一种烈性接触性传染病,其感染宿主会触发机体先天免疫应答,引起I型干扰素(Type I interferon,IFN-1)和炎性细胞因子等细胞因子的产生,为研究可诱导产生炎性细胞因子的含半胱氨酸的天冬氨酸蛋白水解酶(Cysteinyl aspartate specific proteinase 1,caspase-1)的基因敲除对PRV复制的影响,本试验利用近年来发展迅速的一项规律性短重复回文序列簇/Cas9核酸酶(Clustered regulatory interspaced short palindromic repeat/CRISPR associated system 9,CRISPR/Cas9)基因定点修饰技术构建猪肾上皮细胞(Porcine kidney epithelial cells,PK15)caspase-1基因稳定敲除细胞系,并通过T7核酸酶检测敲除效率;细胞毒性(Cell counting kit-8,CCK-8)试剂盒检测PK15敲除caspase-1增殖影响;采用流式细胞术检测PRV-GFP感染PK15以及PK15-caspase-1^-/-的增殖差异;实时荧光定量PCR(Real-time quantitative PCR,RT-PCR)检测PRV-gB、TK及白细胞介素1β(Interleukin-1β,IL-1β)、IFN-β、干扰素刺激基因(Interferon-stimulated genes 20,ISG20)mRNA的表达;Western Blot检测PRV-gB蛋白表达;滴度测定检测子代病毒滴度。结果表明,2对特异性单链引导RNA(Single guide RNA,sgRNA)均能对caspase-1进行基因编辑,但经T7核酸酶酶切进行基因编辑效率分析结果表明sgRNA2的基因编辑效率较高;CCK-8试剂盒检测细胞活力结果表明caspase-1基因敲除对PK15以及PK15-caspase-1^-/-细胞活力无影响(P>0.05);流式细胞仪检测结果表明PRV-GFP在PK15-caspase-1^-/-中的增殖显著低于PK15细胞(P<0.05);定量RT-PCR结果表明PRV-gB、TK基因在PK15-caspase-1^-/-的mRNA表达显著低于PK15细胞(gB:P<0.05,TK:P<0.05),而IFN-β、ISG20基因在PK15-caspase-1^-/-的mRNA表达显著高于PK15细胞(gB:P<0.05,TK:P<0.05);Western Blot结果表明,PRV的gB蛋白在PK15-caspase-1^-/-的表达显著低于PK15细胞(P<0.05);滴度测定结果表明,敲除caspase-1能够抑制PRV子代病毒的增殖。以上结果均表明caspase-1基因敲除可抑制PRV在PK15细胞中复制。     

氮沉降和施生物质炭对毛竹林土壤N2O通量的影响

本研究于2019年7月—2020年7月在浙江省杭州市典型毛竹林布置野外控制实验,采用静态箱-气相色谱法测定毛竹林土壤N₂O通量,分析生物质炭(10 t·hm^-2)、氮沉降(60 kg N·hm^-2·a^-1)、生物质炭+氮沉降混合处理对土壤N₂O通量的影响,并探讨了土壤N₂O通量与环境因子的关系。结果表明: 与对照相比,氮沉降处理使毛竹林土壤N₂O年累积排放量增加了14.6%,而施用生物质炭及其与氮沉降混合处理则分别降低了20.8%和10.6%。相关分析表明,在所有处理下,毛竹林土壤N₂O排放速率与土壤温度、硝态氮含量、脲酶和蛋白酶活性之间均呈极显著相关,与土壤铵态氮含量均呈显著相关。在氮沉降背景下,施用生物质炭对毛竹林土壤N₂O通量仍具有显著的减排效应。     

Crumbs proteins stabilize the cone mosaics of photoreceptors and improve vision in zebrafish

Although the unique organization of vertebrate cone mosaics was first described long ago,both their underlying molecular basis and physiological significance are largely unknown.Here,we demonstrate that Crumbs proteins,the key regulators of epithelial apical polarity,establish the planar cellular polarity of photoreceptors in zebrafish.Via heterophilic Crb2a-Crb2b interactions,the apicobasal polarity protein Crb2b restricts the asymmetric planar distribution of Crb2a in photoreceptors.The planar polarized Crumbs proteins thus balance intercellular adhesions and tension between photoreceptors,thereby stabilizing the geometric organization of cone mosaics.Notably,loss of Crb2b in zebrafish induces a nearsightedness-like phenotype in zebrafish accompanied by an elongated eye axis and impairs zebrafish visual perception for predation.These data reveal a detailed mechanism for cone mosaic homeostasis via previously undiscovered apical-planar polarity coordination and propose a pathogenic mechanism for nearsightedness.     

Identification and Characterization of a Novel Single Domain Antibody Against Ebola Virus

Virologica Sinica - Ebola virus (EBOV) belongs to the Filoviridae family and causes severe illnesses such as hemorrhagic fever with a high mortality rate up to 90%. Now two antibody drugs termed...     

Sustainability of SARS-CoV-2 Induced Humoral Immune Responses in COVID-19 Patients from Hospitalization to Convalescence Over Six Months

Virologica Sinica - Understanding the persistence of antibody in convalescent COVID-19 patients may help to answer the current major concerns such as the risk of reinfection, the protection period...     

Genome structure and apomixis in Phoenicaulis (Brassicaceae; Boechereae)

Apomixis in crucifer (Brassicaceae) species is rare, reported in just four genera (Boechera, Draba, Erysimum, and Parrya), and one intergeneric hybrid (Raphanobrassica). It is well studied only in Boechera, where it is widespread among 100+ recognized species. However, its occurrence in related genera of the tribe Boechereae has not been documented previously. Here we analyzed genome evolution, mode of reproduction, and fertility of the monospecific Boechereae genus Phoenicaulis (P. cheiranthoides), endemic to the northwestern United States. We discovered that the species encompasses diploid (2n = 2x = 14), triploid (2n = 3x = 21), and tetraploid (2n = 4x = 28) populations. Comparative chromosome painting analyses revealed that the three karyotypes are essentially structurally identical, differing only in the presence of a largely heterochromatic chromosome (Het) in the triploid and tetraploid cytotypes. The genome structure of Phoenicaulis appeared identical to that of Boechera species previously analyzed, suggesting genomic stasis despite the morphological and molecular divergence of the two genera. This genome colinearity extended to the presence and structure of the Het chromosomes, which are closely associated with apomictic reproduction in Boechera. Interestingly, all three cytotypes of Phoenicaulis proved to be apomictic, regardless of the presence or absence of a Het chromosome, and sexual populations have yet to be identified.     

Evolution and diversity of axon guidance Robo receptor family genes

The diversity of axon guidance (AG) receptors reflects gains in complexity of the animal nervous system during evolution. Members of the Roundabout (Robo) family of receptors interact with Slit proteins and play important roles in many developmental processes, including AG and neural crest cell migration. There are four members of the Robo gene family. However, the evolutionary history of Robo family genes remain obscure. We analyzed the distribution of Robo family members in metazoan species ranging in complexity from hydras to humans. We undertook a phylogenetic analysis in metazoans, synteny analysis, and ancestral chromosome mapping in vertebrates, and detected selection pressure and functional divergence among four mammalian Robo paralogs. Based on our analysis, we proposed that the ancestral Robo gene could have undergone a tandem duplication in the vertebrate ancestor; then one round of whole genome duplication events occurred before the divergence of ancestral lamprey and gnathostome, generating four paralogs in early vertebrates. Robo4 paralog underwent segmental loss in the following evolutionary process. Our results showed that Robo3 paralog is under more powerful purifying selection pressure compared with other three paralogs, which could correlate with its unique expression pattern and function. Furthermore, we found four sites under positive selection pressure on the Ig1‐2 domains of Robo4 that might interfere with its binding to Slits ligand. Diverge analysis at the amino acid level showed that Robo4 paralog have relatively greater functional diversifications than other Robo paralogs. This coincides with the fact that Robo4 predominantly functions in vascular endothelial cells but not the nervous system.     

北盘江大峡谷流域浮游生物资源调查及多样性分析

为探究北盘江大峡谷流域内浮游生物群落组成及多样性情况,于2017年10月对该流域进行浮游生物调查及多样性分析.结果表明该流域内浮游植物共有7门40属61种、其中绿藻门、硅藻门和蓝藻门种类分别为21种、19种和12种,分别占到34.43％、31.15％和19.67％,浮游植物平均密度为4 298.33(375～9 500)ind./L,Shannon-Wiener藻类生物多样性指数均处于1和2之间;浮游动物3门12属21种,其中轮虫类、枝角类和桡足类种类分别为11种、5种和5种,各占到52.38％、23.81％和23.81％,浮游动物平均密度为436.11(55～1 437.5)ind./L,Shannon-Wiener生物多样性指数均处于1和2之间.本研究结果该地区水生生物资源积累了本底资料.