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101.
Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites 总被引:13,自引:6,他引:7
We propose two approximate methods (one based on parsimony and one on
pairwise sequence comparison) for estimating the pattern of nucleotide
substitution and a parsimony-based method for estimating the gamma
parameter for variable substitution rates among sites. The matrix of
substitution rates that represents the substitution pattern can be
recovered through its relationship with the observable matrix of site
pattern frequences in pairwise sequence comparisons. In the parsimony
approach, the ancestral sequences reconstructed by the parsimony algorithm
were used, and the two sequences compared are those at the ends of a branch
in the phylogenetic tree. The method for estimating the gamma parameter was
based on a reinterpretation of the numbers of changes at sites inferred by
parsimony. Three data sets were analyzed to examine the utility of the
approximate methods compared with the more reliable likelihood methods. The
new methods for estimating the substitution pattern were found to produce
estimates quite similar to those obtained from the likelihood analyses. The
new method for estimating the gamma parameter was effective in reducing the
bias in conventional parsimony estimates, although it also overestimated
the parameter. The approximate methods are computationally very fast and
appear useful for analyzing large data sets, for which use of the
likelihood method requires excessive computation.
相似文献
102.
103.
通过不同浓度的几种糖类对潜伏侵染在青香蕉果实中的colletotrichum musae和芒果果实中的colletotichum gloeosporioides的菌体的影响进行了测定,结果表明,高浓度淀粉可极显著地提高两种炭疽菌的孢子萌发率,并有利于附着胞和分生孢子的形成。单糖和二糖在较低浓度时有利于孢子萌发和产孢,不利于附着胞形成。未成熟果实的坚硬结构和高淀粉含量为病菌提供了以附着胞形式潜伏侵染在寄主中的条件。 相似文献
104.
Moxidectin, a newly developed endectocide, has previously been demonstrated to have a high efficacy against gastrointestinal nematodes in cattle (Ranjan et al. 1992, Scholl et al. 1992). In a field trial (Yang, Satrija and Nansen, unpublished data) matched groups of 8 first-season Black Pied Friesian heifer calves, 6-8 months of age, were turned out in early May 1992 on a permanent pasture contaminated with trichostrongyles. The groups were grazed separately on comparable plots until they were housed in mid October 1992. Group Β was treated with moxidectin at turnout, and group C was treated at turnout and again 8 weeks after turnout. A third group served as non-treated controls (group A). The results showed that the 2 early season prophylactic treatments (group C) reduced the late season herbage trichostrongyle larval infectivity with 80 to 90%, whereas the reduction accomplished by only 1 treatment at turnout (group B) was much less. Group C excreted significantly lower numbers of strongyle eggs than groups A and B. The non-treated controls showed clinical signs of trichostrongylosis in late September, which coincided with a steep rise in serum pepsinogen levels reaching an average peak level of 3.5 IU tyrosine litre-1. A few animals in group Β showed softening of faeces particularly in the very late season. In contrast, animals receiving 2 moxidectin treatments remained in a clinically good condition throughout the season. 相似文献
105.
106.
应用常规病理、免疫病理及超微病理技术,对33例流行性出血热(EHF)患者皮肤活检标本的病理变化及病毒抗原、免疫复合物进行观察,同时与血清病毒抗原、抗体及循环免疫复合物检出情况进行比较。在23例EHF患者皮肤微血管内皮细胞中检出病毒抗原,部分组织中可同时检出免疫球蛋白及C3,少数组织仅能检出病毒抗原或免疫球蛋白。配对血清小也可检出EHF病毒抗原、抗体及循环免疫复合物。组织及血清免疫复合物形成与血清补体C3水平下降有关,组织内肥大细胞脱颗粒与血清IgE水平升高相关,提示多种变态反应参与了流行性出血热的发病机制。 相似文献
107.
108.
黑节草从传粉到受精约需130d,精子在花粉管中形成,胚囊发育属蓼型胚囊,因反足细胞较早退化,故受精前胚囊多只由卵器和中央细胞组成。精卵核融合时,精核染色质进入卵核后凝集成颗粒状,并在原位与卵核的染色质融合,雌、雄性核仁一直维持至合子的第一次分裂期前。双受精作用正常,属于有丝分裂前配子融合类型,初生胚乳核发生2-3次分裂后逐渐退化消失,胚的发育局限于球形胚阶段。 相似文献
109.
The degradation of cytoplasmic antigens to peptides presented by class I MHC molecules is thought to be mediated by the ubiquitin/proteasome pathway. Support for this view came from our observation that the subunit composition of proteasomes can be changed by interferon-gamma (IFN-gamma) treatment. Thereby two subunits, LMP2 and LMP7, which are encoded in the MHC class II region, are incorporated into the proteasomal complex, whereas other subunits disappear. In the experiments reported in this communication we studied the subunit changes occurring in cell lines where the expression of LMP2 or LMP7 can be regulated individually either by IFN-gamma induction or by applying a new system to control the expression of transfected LMPs. In both situations LMP2 induction leads exclusively to the disappearance of housekeeping subunit 2, whereas LMP7 affects only subunit 10. Subunit 2 was found to be 76% homologous to LMP2. Since incorporation of LMP2 into the proteasomal complex prevents processing of the subunit 2 precursor, we conclude that LMP2 displaces subunit 2 during assembly. Subunit displacement is most likely a general mechanism to modulate the catalytic activity of the proteasomal complex without changing its structure. Furthermore, the controlled incorporation of transfected subunits into the complex offers a new approach to study proteasome function in vivo. 相似文献
110.
Vibrational circular dichroism of A-, B-, and Z-form nucleic acids in the PO2-stretching region. 下载免费PDF全文
Vibrational circular dichroism (VCD) spectra were measured for H2O solutions of several natural and model DNAs (single and double strands, oligomers and polymers) in the B-form, poly(dG-dC)-poly(dG-dC) in the Z-form, and various duplex RNAs in an A-form over the PO2-stretching region. Only the symmetric PO2 stretch at approximately 1075 cm-1 yields a significant intensity VCD signal. Differences of the PO2-stretching VCD spectra found for these conformational types are consistent with the spectral changes seen in the base region, but no sequence dependence was seen in contrast to VCD for base modes. The B to Z transition is accompanied by an inversion of the PO2- VCD spectra, which is characteristic of the change in the helical sense of the nucleic acid backbone. A-RNAs give rise to the same sense of couplet VCD as do B-DNAs but have a somewhat different shape because of overlapping ribose modes. These PO2- VCD spectral characteristics have been successfully modeled using simple dipole coupling calculations. The invariability of the symmetric PO2- stretching mode VCD spectra to the base sequence as opposed to that found for the C = O stretching and base deformation modes is evidence that this mode will provide a stable indication of the DNA helical sense. 相似文献