Synthesis of linear and cyclic phosphopeptides as ligands for the N-terminal SH2-domain of protein tyrosine phosphatase SHP-1.

Linear and cyclic phosphopeptides related to the pY2267 binding site of the epithelial receptor tyrosine kinase Ros have been synthesized as ligands for the amino-terminal SH2 (src homology) domain of protein tyrosine phosphatase SHP-1. The synthesis was accomplished by Fmoc-based solid-phase methodology using side-chain unprotected phosphotyrosine for the linear and mono-benzyl protected phosphotyrosine for the cyclic peptides. According to molecular modelling, the incorporation of a glycine residue between Lys (position pY-1 relative to phosphotyrosine) and Asp or Glu (position pY+2) was recommended for the cyclic candidates. The preparation of these peptides was successfully performed by the incorporation of a Fmoc-Xxx(Gly-OAll)-OH (Xxx = Asp, Glu) dipeptide building block that was prepared in solution prior to SPPS. The cyclization was achieved with PyBOP following Alloc/OAll-deprotection. This study demonstrates the usefulness of allyl-type protecting groups for the generation of side-chain cyclized phosphopeptides. Alloc/OAll-deprotection and cyclization are compatible with phosphorylated tyrosine.     

Biochemical and physiological mechanisms related to cold acclimation and enhanced freezing tolerance in poplar plantlets

Temperature is one of the abiotic factors limiting growth and productivity of plants. In the present work, the effect of low non-freezing temperature, as inducer of 'cold acclimation', was studied in poplar. Actively growing plantlets of Populus tremula  ×  Populus tremuloides cv. Muhs 1 were used, and cold treatment consisted in whole plants exposure to 4°C in controlled conditions. Leaves of cold-treated poplars were shown to be acclimated, as an increase of their freezing tolerance was measured using electrolyte leakage. Chlorophyll fluorescence measurements revealed a decrease in photosystem II efficiency while the pigment contents of leaves did not vary. In contrast, after 1 week of cold exposure, an accumulation of pigments was noted in the stems near the apex of the stressed plants as confirmed by chromatographic analyses. Simultaneously, a rapid accumulation of osmoprotectants, i.e. carbohydrates (measured by spectrometry), and of stress indicators (e.g. putrescine) occurred; changes in protein patterns also arose. Indeed, Western blot studies revealed that the expression of three families of stress-related proteins, i.e. dehydrins, stress protein 1 and heat-shock protein 70, was activated or induced by low temperatures. This study complements a previous work on proteomic and individual carbohydrates and provides insight in the ability of poplar plantlets to cold acclimate and to cope with low temperatures by diverse mechanisms (growth cessation, carbohydrate, pigment, polyamine and protein accumulations) related to stress response or involved in acclimation process.     

Analyses of soil bacterial diversity of the Schirmacher Oasis,Antarctica

Schirmacher Oasis, Antarctica, is a region with relatively large exposed area and consisted of many freshwater lakes. Nevertheless, only a few studies were done on the bacterial diversity of this region. Hence, this project was undertaken to determine the bacterial community in soil samples collected from the Schirmacher Oasis using the denaturing gradient gel electrophoresis (DGGE) of amplified 16S rDNA fragments. A total of 79 partial 16S rDNA sequences were obtained from the excised DGGE bands, which corresponded to 63 different operational taxonomic units (OTUs) representing bacteria from seven different phyla. The most dominant phyla in descending order were Acidobacteria, Proteobacteria, Bacteroidetes, and Actinobacteria, Planctomycetes, Cyanobacteria and BRC1. There were 5.4 % of unclassified bacteria which cannot be grouped into any of the existing phyla. Eighty-seven percent of the OTUs had highest similarity with the uncultured bacteria from the NCBI GenBank database. Thirty-two percent of the OTUs were similar to bacteria reported in other parts of the Antarctica, while the others were related to bacteria found elsewhere outside the Antarctic.     

Global change‐driven effects on dissolved organic matter composition: Implications for food webs of northern lakes

Northern ecosystems are experiencing some of the most dramatic impacts of global change on Earth. Rising temperatures, hydrological intensification, changes in atmospheric acid deposition and associated acidification recovery, and changes in vegetative cover are resulting in fundamental changes in terrestrial–aquatic biogeochemical linkages. The effects of global change are readily observed in alterations in the supply of dissolved organic matter (DOM)—the messenger between terrestrial and lake ecosystems—with potentially profound effects on the structure and function of lakes. Northern terrestrial ecosystems contain substantial stores of organic matter and filter or funnel DOM, affecting the timing and magnitude of DOM delivery to surface waters. This terrestrial DOM is processed in streams, rivers, and lakes, ultimately shifting its composition, stoichiometry, and bioavailability. Here, we explore the potential consequences of these global change‐driven effects for lake food webs at northern latitudes. Notably, we provide evidence that increased allochthonous DOM supply to lakes is overwhelming increased autochthonous DOM supply that potentially results from earlier ice‐out and a longer growing season. Furthermore, we assess the potential implications of this shift for the nutritional quality of autotrophs in terms of their stoichiometry, fatty acid composition, toxin production, and methylmercury concentration, and therefore, contaminant transfer through the food web. We conclude that global change in northern regions leads not only to reduced primary productivity but also to nutritionally poorer lake food webs, with discernible consequences for the trophic web to fish and humans.     

The Nucleotide-binding Leucine-rich Repeat (NLR) Family Member NLRX1 Mediates Protection against Experimental Autoimmune Encephalomyelitis and Represses Macrophage/Microglia-induced Inflammation

The nucleotide binding domain and leucine-rich repeat-containing (NLR) family of proteins is known to activate innate immunity, and the inflammasome-associated NLRs are prime examples. In contrast, the concept that NLRs can inhibit innate immunity is still debated, and the impact of such inhibitory NLRs in diseases shaped by adaptive immune responses is entirely unexplored. This study demonstrates that, in contrast to other NLRs that activate immunity, NLRX1 plays a protective role in experimental autoimmune encephalomyelitis (EAE), a mouse model for multiple sclerosis. When compared with wild-type controls, Nlrx1^−/− mice have significantly worsened clinical scores and heightened CNS tissue damage during EAE. NLRX1 does not alter the production of encephalitogenic T cells in the peripheral lymphatic tissue, but Nlrx1^−/− mice are more susceptible to adoptively transferred myelin-reactive T cells. Analysis of the macrophage and microglial populations indicates that NLRX1 reduces activation during both active and passive EAE models. This work represents the first case of an NLR that attenuates microglia inflammatory activities and protects against a neurodegenerative disease model caused by autoreactive T cells.     

Granzyme B regulates antiviral CD8+ T cell responses

CTLs and NK cells use the perforin/granzyme cytotoxic pathway to kill virally infected cells and tumors. Human regulatory T cells also express functional granzymes and perforin and can induce autologous target cell death in vitro. Perforin-deficient mice die of excessive immune responses after viral challenges, implicating a potential role for this pathway in immune regulation. To further investigate the role of granzyme B in immune regulation in response to viral infections, we characterized the immune response in wild-type, granzyme B-deficient, and perforin-deficient mice infected with Sendai virus. Interestingly, granzyme B-deficient mice, and to a lesser extent perforin-deficient mice, exhibited a significant increase in the number of Ag-specific CD8(+) T cells in the lungs and draining lymph nodes of virally infected animals. This increase was not the result of failure in viral clearance because viral titers in granzyme B-deficient mice were similar to wild-type mice and significantly less than perforin-deficient mice. Regulatory T cells from WT mice expressed high levels of granzyme B in response to infection, and depletion of regulatory T cells from these mice resulted in an increase in the number of Ag-specific CD8(+) T cells, similar to that observed in granzyme B-deficient mice. Furthermore, granzyme B-deficient regulatory T cells displayed defective suppression of CD8(+) T cell proliferation in vitro. Taken together, these results suggest a role for granzyme B in the regulatory T cell compartment in immune regulation to viral infections.     

Territorialit?t und Brutbiologie der FeldlercheAlauda arvensis in einer intensiv genutzten Agrarlandschaft

Zusammenfassung In einer intensiv landwirtschaftlich genutzten Fläche des schweizerischen Mittellandes wurden 1983–1987 vier Feldlerchenaggregationen mit maximal 39 Brutpaaren untersucht. Die Tradition (Ortstreue) bestimmte in erster Linie die Revierwahl und das Verteilungsmuster. Die Reviere waren mit ha sehr groß; ihre Größe korrelierte negativ mit der Anzahl Parzellen pro Fläche und der Kulturendiversität. Die Nutzung des Ressourcenangebots (Nistplatz, Nahrung, Schutz) war abhängig von den Fortbewegungsmöglichkeiten. In großparzellig strukturierten Flächen mit geringer Kulturendiversität kam es häufig zu Revierverschiebungen und Reviervergrößerungen. Die Feldlerche versucht, im Laufe der Brutperiode den Getreideanteil im Revier zu verkleinern und Kulturen wie Rüben, Kartoffeln und auch Mais zu aquirieren. Die Nistplatzwahl zeigte eine deutliche Präferenz für alle nicht zu dicht stehenden, grasartigen Kulturen (Weizen, Hafer, Fettwiese). Eine Vegetationshöhe von 15–25 cm und eine Bodenbedeckung von 20–50 % bieten optimale Bedingungen für den Nestbau. 51 % aller Nester wurden in der Fettwiese angelegt, 20 % im Winterweizen und 18 % im Mais. Je nach Bewirtschaftungsart brüteten die im Mittel 2,4–2,8mal pro Brutsaison. Die Schlüpfrate von 220 Gelegen betrug 0,58. 44 % der geschlüpften Jungvögel verließen das Nest. Der Bruterfolg (nestverlassende Junge/gelegte Eier) lag bei max. 25 %. Dem Fütterungsverhalten der Altvögel nach zu schließen, wurden maximal 50 % der nestverlassenden Jungen flügge. Durchschnittlich war mit 0,9 flüggen Jungen pro Brutpaar und Jahr zu rechnen. Brutverluste waren kulturspezifisch und daher in erster Linie vom Neststandort abhängig.

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Territoriality and breeding biology of Skylark (Alauda arvensis) in an intensively farmed area in Switzerland

Summary In 1983–1987 four plots (total surface 307 ha) with up to 39 breeding pairs were studied in an area of intensive cultivation in the Swiss Lowlands (390 m asl). Distribution pattern and selection of territories are determined by a strong site tenacity of the birds. The size of territories averaged 3,3±0,9 hectares. It correlates negatively with the number of different crops per unit area and the diversity of cultures.The mobility within the vegetation determined which types of farmland ressources may be used for nesting, feeding and cover. Shifts of territories and attempts to enlarge them were frequent in areas of large plots with low crop diversity. During the season, Skylarks tried to reduce the proportion of cereal fields within their territory and to gain plots planted with sugar-beet, potatoes and corn.Their choice of nesting sites showed a strong preference for less dense grass crops such as wheat, oat or meadows. Optimal conditions for nest sites were in fields with a vegetation height of 15–25 cm and a ground coverage of 20–50 %. 51 % of 220 nests were constructed in heavily manured meadows, 20 % in winter wheat fields and 18 % in corn fields. Females bred on average 2,4–2,8 times per breeding season, depending on the type of cultivation (agriculture, husbandry). Hatching rate was 58 % out of 220 clutches, and 44 % of the hatched young left the nest. Maximum breeding success (i. e. young birds leaving the nest/number of eggs laid) was thus maximal 25 %. Observations of parental feeding behaviour suggest that a maximum of 50 % of the young larks which leave the nests survive to the age of fledging. It is estimated that 0,9 fledglings are raised per breeding pairs and year. Losses of broods vary according to farming practises in the different crops and therefore are largely depending on nesting sites.

     

Characterization of NLRP12 during the development of allergic airway disease in mice

Among the 22 members of the nucleotide binding-domain, leucine rich repeat-containing (NLR) family, less than half have been functionally characterized. Of those that have been well studied, most form caspase-1 activating inflammasomes. NLRP12 is a unique NLR that has been shown to attenuate inflammatory pathways in biochemical assays and mediate the lymph node homing of activated skin dendritic cells in contact hypersensitivity responses. Since the mechanism between these two important observations remains elusive, we further evaluated the contribution of NLRP12 to organ specific adaptive immune responses by focusing on the lung, which, like skin, is exposed to both exogenous and endogenous inflammatory agents. In models of allergic airway inflammation induced by either acute ovalbumin (OVA) exposure or chronic house dust mite (HDM) antigen exposure, Nlrp12(-/-) mice displayed subtle differences in eosinophil and monocyte infiltration into the airways. However, the overall development of allergic airway disease and airway function was not significantly altered by NLRP12 deficiency. Together, the combined data suggest that NLRP12 does not play a vital role in regulating Th2 driven airway inflammation using common model systems that are physiologically relevant to human disease. Thus, the allergic airway inflammation models described here should be appropriate for subsequent studies that seek to decipher the contribution of NLRP12 in mediating the host response to agents associated with asthma exacerbation.