Screening method for detection of hydrocarbon-oxidizing bacteria in oil-contaminated water and soil specimens

Toxic action of crude oil on the living world and ecosystems in general is a global problem of both aquatic and terrestrial environments. Bearing in mind the possibility of biodegradation of this toxicant, the procedures of determining counts and activity of cultivable microorganisms, and especially of bacteria responsible for degradation processes, are of great significance. The aim of this work was to study the possibility of modifying some solid media by adding triphenyltetrazolium chloride reagent as an indicator of the dehydrogenase activity, to develop a simple screening method for a simultaneous assessment of the count and activity of cultivable hydrocarbon-oxidizing bacteria in the oil-contaminated environments. The modified method appeared to be rapid and very suitable for the intended purposes.     

Breast infiltrating ductal carcinoma: analysis of hormone, HER-2 receptors and Ki-67 proliferation marker

The aim of this study was to analyse breast carcinomas with discordant receptor status, probably hormonal dependent (estrogen receptor (ER) positive, progesterone receptor (PR) negative or ER-PR + subgroup profile) infiltrating ductal breast carcinomas not otherwise specified (IDC NOS). Specimens from 90 IDC NOS were grouped into three categories according to hormonal status: dependent (D) (ER +PR +), probably dependent (PD) (ER +PR- or ER-PR +) and non-dependent (ND) (ER-PR-); they were evaluated considering some established prognostic parameters in breast carcinomas. Statistically significant difference was found between tumor receptor status distribution and menopausal status (p = 0.0235), age of the patients (p = 0.000467), histological grade (p = 0.000003), vascular invasion (p = 0.006), HER-2 status (p = 0.0039) and Ki-67 proliferation rate (p = 0.000311). D tumors were found exclusively in post-menopausal patients (average age 68.9 years), most of which had intermediate (II) grade, without vascular invasion, with HER-2 status score predominantly 0 or 1 + and lower Ki-67 proliferation rate. PD tumors were found predominantly in younger post-menopausal patients (average age 57.5 years), with vascular invasion found in 23% of the cases. ND tumors mostly had higher histological grade, showed the highest percentage of the Ki-67 positive tumor cells and vascular invasion in 30% of the cases. We conclude that the patients with PD breast carcinomas were younger post-menopausal women with the tumors moderately differentiated, HER-2 score 0 or 1+ and with lower Ki-67 proliferation rate.     

Formation of noncanonical DNA structures mediated by human ORC4, a protein component of the origin recognition complex

Many genomic sequences, DNA replication origins included, contain specific structural motifs prone to alternative base pairing. Structural rearrangements of DNA require specific environmental conditions and could be favored by chemical agents or proteins. To improve our understanding of alternative conformations of origins and the manner in which they form, we have investigated the effect of DNA-binding, AAA+ protein human ORC4 on single-stranded origin DNA or various oligonucleotides. Here we demonstrate that human ORC4 stimulated formation of inter- and intramolecular T.A.T triplexes and created novel structures, such as homoadenine duplexes. Adenine-based structures were held together by Hoogsteen hydrogen bonds, as demonstrated on 7-deaza-dAMP- or dAMP-containing substrates, and characterized by increased thermal stability. Adenine pairing occurred only in the presence of human ORC4, in a neutral buffer supplemented with ATP and Mg (2+) ions. The protein mutant that could not bind ATP was inactive in this reaction. Since the action of human ORC4 could be biologically important, its potential impact on DNA replication is discussed.     

Monitoring of gene expression by functional proteomics: response of human lung fibroblast cells to stimulation by endothelin-1.

Proteomic methods have been used to monitor changes in protein synthesis in the first 4 h following stimulation of human lung fibroblasts with endothelin-1. Using pulsed [(35)S]methionine labeling, about 70 proteins with altered protein synthesis could be detected, and the 35 proteins showing the largest changes were identified by mass spectrometry. The observed proteins included unexpected proteins such as Sox5, two isoforms of Rab14, Rab3A, translationally controlled tumor protein, and one protein of previously unknown function. There was a wide range of different kinetic behavior, and groups of functionally linked proteins such as Rab14, nucleophosmin,and cyclin-dependent kinase inhibitor 1B could be detected from similar kinetics. We propose that the functional proteomic methods are competitive with and have some advantages compared to expression profiling methods for monitoring gene expression.     

Coproporphyrins,Uroporphyrins, and Their Metal Comlexes: Biosynthesis and Application to Immune Analysis and Diagnostic Methods

Methods of synthesis of coproporphyrin and uroporphyrin by using bacteria of the genus Arthrobacterare proposed. Metal complexes of coproporphyrin and uroporphyrin with Pt, Pd, and Zn were synthesized. Their structures were identified by spectrophotometry, IR spectrometry, ¹H-NMR, mass spectrometry, and HPLC. Data showing the possibility of using coproporphyrin III–metal complexes as luminophores for fluorescence detection of tumors was gathered. The current and prospective uses of metal complexes of water-soluble natural porphyrins in advanced immunofluorescence assays are discussed.     

Photocontrol of biological processes in monocotyledonous plants after relaxation of phytochrome system

Effects of a short-term pre-irradiation of etiolated wheat seedlings by radiation of various wavelengths and various irradiances on the rates of photophospho-rylation, Hill reaction, and chlorophyll accumulation were studied. The curves, constructed for the dependence of inhibitory effect in different processes on pre-irradiance doses, have a saturation level corresponding to photostationary state of the phytochrome system and a pre-threshold site where the inhibition is absent. For an interpretation of the experimental data we suggest a general model that includes both the threshold concept of Mohr and the presence of an additional control mechanism not sensitive to far-red radiation. According to the model, the phytochrome-controlled biological effect is pro-portional to the time during which the level of active phytochrome is higher than the threshold one and may be analysed according to the inhibition degree. The difference in control by red (RR) and green radiation (GR) pretreatments is attributed to the difference of the phytochrome photoconversion rate under RR and GR.     

Metabolic process in uterine structures after different damages to the nervous system

Metabolic processes in the uterus damaged in different parts of its innervation were studied. The specificity of neurodystrophic processes in the uterus depends on the nature of the injury to its innervation. Combination of different methods of modern morphological analysis made it possible to reveal hypoplastic processes in all the layers of the uterus.     

The role of cyanobacteria in crystallization of magnesium calcites

Laboratory experiments showed the effect of the cyanobacterium Microcoleus chthonoplastes on the formation of magnesium calcites, using model solutions (2.14M MgCl₂-0.05M CaCl₂-0.6M NaCl-0.18M NaHCO₃). The conditions of existence of cyanobacteria in such solutions in light or darkness significantly alter the structure of the sediment and the shape and size of the carbonate crystals. Cyanobacteria slow down crystallization due to the formation of exometabolites with a chelating effect, which leads to the precipitation of high-magnesium calcites. In the photosynthetic environment the presence of huntite (CaMg₃(CO₃)₄), possible forerunner of dolomite, is prominent.