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51.
Hugues Bersini 《Origins of life and evolution of the biosphere》2010,40(2):121-130
There is a long tradition of software simulations in theoretical biology to complement pure analytical mathematics which are
often limited to reproduce and understand the self-organization phenomena resulting from the non-linear and spatially grounded
interactions of the huge number of diverse biological objects. Since John Von Neumann and Alan Turing pioneering works on
self-replication and morphogenesis, proponents of artificial life have chosen to resolutely neglecting a lot of materialistic
and quantitative information deemed not indispensable and have focused on the rule-based mechanisms making life possible,
supposedly neutral with respect to their underlying material embodiment. Minimal life begins at the intersection of a series
of processes which need to be isolated, differentiated and duplicated as such in computers. Only software developments and
running make possible to understand the way these processes are intimately interconnected in order for life to appear at the
crossroad. In this paper, I will attempt to set out the history of life as the disciples of artificial life understand it,
by placing these different lessons on a temporal and causal axis, showing which one is indispensable to the appearance of
the next and how does it connect to the next. I will discuss the task of artificial life as setting up experimental software
platforms where these different lessons, whether taken in isolation or together, are tested, simulated, and, more systematically,
analyzed. I will sketch some of these existing software platforms: chemical reaction networks, Varela’s autopoietic cellular
automata, Ganti’s chemoton model, whose running delivers interesting take home messages to open-minded biologists. 相似文献
52.
Biogeographical analyses are applied to skipper (Hesperioidea) presence/absence data from the Western Mediterranean mainland
and the three largest islands (Sardinia, Corsica and Sicily) in order to identify potential conservation issues. The analyses
performed on species, both collectively and individually, indicate that regional species richness and occurrence in the Mediterranean
zone are largely predicted by latitude and area but that islands have impoverished faunas. Several species, predicted to be
present on these islands from logistic regression of their continental distributions, are actually absent. The number of species
predicted to be present from logistic regression analyses for each island, closely matched the number of species predicted
to occur in regional-focused multiple regression analysis. This suggests that missing species have been identified. When compared
with species that occur in Sicily and Corsica, the missing species are shown to differ for ecological traits, mainly those
linked to altitudinal tolerance. No ecological distinctions were disclosed for Sardinian skippers suggesting a mainly stochastic
colonisation. These results, and those from an analogous study carried out on Papilionoidea, point to Hesperioidea having
(i) overall more impoverished faunas on islands and (ii) being subject to stochastic or historical colonisation events more
than Papilionoidea. Species not predicted to occur on islands based on their mainland distributions and ecological traits,
are foci for conservation attention. However, as many species becoming extinct on the islands may be irreplaceable, all species,
in particular the Sardinian ones, deserve to be conserved. 相似文献
53.
John M. Miller 《BMJ (Clinical research ed.)》1889,2(1506):1063-1064
54.
F. D. Miller K. F. Jorgenson R. J. Winkfein J. H. van de Sande D. A. Zarling J. Stockton 《Journal of biomolecular structure & dynamics》2013,31(3):611-620
Abstract Bacteriophage PM2 DNA, a ccc genome of high apparent superhelical density, contains left-handed (Z) regions as detected by competitive radioimmunoassay, agarose gel electrophoresis of DNA: antibody complexes and immunoelectron microscopy. The latter technique, in conjunction with partial blockage of restriction endonuclease sites by bound antibody, was used to map the left-handed regions along the DNA molecule. A cluster of four to five antibody molecules (approximately 25% of bound antibody) was located within map units 0.05–0.18 of the single Hpa II restriction site. Sequence analysis of part of this region showed the presence of several areas of high alternating purine-pyrimidine content. A strong correlation is observed between alternating pyrimidine-purine tracts of significant length and antibody binding sites. 相似文献
55.
Hiroyuki Kozu Isao Kobayashi Mitsutoshi Nakajima Kunihiko Uemura Seigo Sato Sosaku Ichikawa 《Food biophysics》2010,5(4):330-336
This paper uses computational fluid dynamics to simulate and analyze intragastric fluid motions induced by human peristalsis.
We created a two-dimensional computational domain of the distal stomach where peristalsis occurs. The motion of the gastric
walls induced by an antral contraction wave (ACW) on the wall of the computational domain was well simulated using a function
defined in this study. Retropulsive flow caused by ACW was observed near the occluded region, reaching its highest velocity
of approximately 12 mm/s in the narrowest region. The viscosity of the model gastric contents applied in this study hardly
affected the highest velocity, but greatly affected the velocity profile in the computational domain. The shear rate due to
gastric fluid motion was calculated using the numerical output data. The shear rate reached relatively high values of approximately
20 s−1 in the most occluded region. The shear rate profile was almost independent of the fluid viscosity. We also simulated mass
transfer of a gastric digestive enzyme (pepsin) in model gastric content when peristalsis occurs on the gastric walls. The
visualized simulation results suggest that gastric peristalsis is capable of efficiently mixing pepsin secreted from the gastric
walls with an intragastric fluid. 相似文献
56.
A nuclear specific glycoprotein representative of a unique pattern of glycosylation 总被引:12,自引:0,他引:12
Whole rat liver nuclei were reacted with UDP-[14C]galactose in the presence of bovine beta(1----4) galactosyltransferase. The reaction mixture was electrophoresed on a reducing sodium dodecyl sulfate-polyacrylamide gel. Autoradiograms of the gel demonstrated a major labeled broad band migrating with an apparent molecular weight of 65,000-66,000. A number of other less prominently labeled bands were also present. The labeled 65,000-66,000 band when cut from the gel and subjected to alkaline reduction while in the gel matrix exclusively yielded a 14C-labeled disaccharide that co-migrated with a [14C]Gal-GlcNAcol standard in descending paper chromatography. Treatment of this disaccharide with beta-galactosidase (beta-D-galactoside galactohydrolase; EC 3.2.1.23) from Aspergillus niger removed all the [14C]galactose label. Treatment of the labeled 65,000-66,000 polypeptide with Endoglycosidase F, however, did not remove the [14C]galactose label. Western transfer blots of sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels performed with horseradish peroxidase-labeled succinyl wheat germ agglutinin, a lectin specific for GlcNAc, on unlabeled nuclei revealed a dominant band at 63,000-64,000. Subjecting 14C-labeled nuclei to this procedure resulted in a shift of the major horseradish peroxidase-labeled succinyl wheat germ agglutinin band to 65,000-66,000. The shifted band was coincident with the [14C]galactose band as visualized on an autoradiogram. A survey of other rat tissue nuclei revealed the same spectrum of [14C]galactose acceptor proteins with a dominant 65,000-66,000 galactose-labeled band. 相似文献
57.
Patrizia Vaccino Heinz-Albert Becker Andrea Brandolini Francesco Salamini Benjamin Kilian 《Molecular genetics and genomics : MGG》2009,281(3):289-300
The celiac disease (CD) is an inflammatory condition characterized by injury to the lining of the small-intestine on exposure
to the gluten of wheat, barley and rye. The involvement of gluten in the CD syndrome has been studied in detail in bread wheat,
where a set of “toxic” and “immunogenic” peptides has been defined. For wheat diploid species, information on CD epitopes
is poor. In the present paper, we have adopted a genomic approach in order to understand the potential CD danger represented
by storage proteins in diploid wheat and sequenced a sufficiently large number of cDNA clones related to storage protein genes
of Triticum monococcum. Four bona fide toxic peptides and 13 immunogenic peptides were found. All the classes of storage proteins were shown to contain harmful
sequences. The major conclusion is that einkorn has the full potential to induce the CD syndrome, as already evident for polyploid
wheats. In addition, a complete overview of the storage protein gene arsenal in T. monococcum is provided, including a full-length HMW x-type sequence and two partial HMW y-type sequences.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. 相似文献
58.
C D Wolleben R K McPherson J Rulfs G L Johnson T B Miller 《Biochimica et biophysica acta》1987,928(1):98-106
The phosphorylation of glycogen synthase has been studied in freshly isolated adult rat cardiomyocytes. Six peaks of 32P-labeled tryptic peptides are recovered via C-18 high performance liquid chromatography (HPLC) when synthase is immunoprecipitated from 32P-labeled cardiomyocytes and digested with trypsin. When epinephrine treated cells are used as a source of enzyme, the same HPLC profile is obtained with a dramatic enhancement of 32P recovered in two of the HPLC peaks. In vitro phosphorylation of rat heart synthase by cAMP-dependent protein kinase stimulates the conversion of synthase from the I to the D form and results in the recovery of the same tryptic peptides from the C-18 as is the case for synthase derived from cardiomyocytes. Treatment of cAMP-dependent kinase phosphorylated synthase with protein phosphatase-1 leads to a reactivation of the enzyme and a dephosphorylation of the same tryptic peptides that are selectively phosphorylated in epinephrine treated cardiomyocytes. These results are discussed in relation to hormonal control of glycogen metabolism in cardiac tissue. 相似文献
59.
Background
Radial chromosome positioning in interphase nuclei is nonrandom and can alter according to developmental, differentiation, proliferation, or disease status. However, it is not yet clear when and how chromosome repositioning is elicited. 相似文献60.
The isolation and identification of a material present in the plasma of hypertensive dogs and hypertensive human patients has been under study since 1972. The earliest experiments in relation to this work, noted that plasma from hypertensive dogs cause a hyperresponse to norepinephrine when both were administered by way of the vein. Employing a rat assay system that consisted of an anesthetized rat with polyethylene catheters in the vein for giving norepinephrine and the test fractions and a catheter in the artery for blood pressure monitoring, fractions from hog kidney were tested for hyperresponsiveness activity. The active material is very comparable to cyclic AMP in molecular weight, ultraviolet spectrum, paper chromatography, Enzyme hydrolysis and activity in the anesthetized rat system. This evidence indicates that the hyperresponsiveness factor of renal origin is cyclic AMP. 相似文献