Genome –Scale Reconstruction of Metabolic Networks of Lactobacillus casei ATCC 334 and 12A

Lactobacillus casei strains are widely used in industry and the utility of this organism in these industrial applications is strain dependent. Hence, tools capable of predicting strain specific phenotypes would have utility in the selection of strains for specific industrial processes. Genome-scale metabolic models can be utilized to better understand genotype-phenotype relationships and to compare different organisms. To assist in the selection and development of strains with enhanced industrial utility, genome-scale models for L. casei ATCC 334, a well characterized strain, and strain 12A, a corn silage isolate, were constructed. Draft models were generated from RAST genome annotations using the Model SEED database and refined by evaluating ATP generating cycles, mass-and-charge-balances of reactions, and growth phenotypes. After the validation process was finished, we compared the metabolic networks of these two strains to identify metabolic, genetic and ortholog differences that may lead to different phenotypic behaviors. We conclude that the metabolic capabilities of the two networks are highly similar. The L. casei ATCC 334 model accounts for 1,040 reactions, 959 metabolites and 548 genes, while the L. casei 12A model accounts for 1,076 reactions, 979 metabolites and 640 genes. The developed L. casei ATCC 334 and 12A metabolic models will enable better understanding of the physiology of these organisms and be valuable tools in the development and selection of strains with enhanced utility in a variety of industrial applications.     

Killer whales (Orcinus orca) in the Canadian Arctic: Distribution,prey items,group sizes,and seasonality

Killer whales (Orcinus orca) have a global distribution, but many high‐latitude populations are not well studied. We provide a comprehensive review of the history and ecology of killer whales in the Canadian Arctic, for which there has previously been little information. We compiled a database of 450 sightings spanning over 15 decades (1850–2008) to document the historical occurrence, distribution, feeding ecology, and seasonality of killer whales observed throughout the region. Sighting reports per decade increased substantially since 1850 and were most frequent in the eastern Canadian Arctic. The mean reported group size was 8.3 (median = 4, range 1–100), but size varied significantly among regions and observed prey types. Observations of predation events indicate that Canadian Arctic killer whales prey upon other marine mammals. Monodontids were the most frequently observed prey items, followed by bowhead whales (Balaena mysticetus), phocids, and groups of mixed mammal prey. No killer whale sightings occurred during winter, with sightings gradually increasing from early spring to a peak in summer, after which sightings gradually decreased. Our results suggest that killer whales are established, at least seasonally, throughout the Canadian Arctic, and we discuss potential ecological implications of increased presence with declining sea ice extent and duration.     

Skin tight: cell adhesion in the epidermis of Caenorhabditis elegans

The powerful genetics, genomics and microscopy tools available for C. elegans make it well suited to studying how epithelial cells adhere to one another and the extracellular matrix, and how the integrated, simultaneous activities of multiple cell adhesion complexes function to shape an organism. Recent studies using forward and reverse genetics have shed light on how phylogenetically conserved cell adhesion complexes, such as the cadherin/catenin complex, claudins, the Discs large complex and hemidesmosome-like attachment structures, regulate epithelial cell adhesion, providing new insights into conserved cell adhesion mechanisms in higher eukaryotes.