The alkylation of 2′-deoxyguanosine and of thymidine with diazoalkanes. Some observations on O-alkylation

The reaction in ether-methanol between 2'-deoxyguanosine and diazomethane or its ethyl or n-butyl homologue gives 1-, O(6)- and 7-alkyl-2'-deoxyguanosine. N(2),O(6)-Dimethyl-2'-deoxyguanosine was also detected. The hydrolysis of the methyl and the ethyl derivatives gives the corresponding alkylguanines: the O(6)-alkyl-2'-deoxyguanosines were sequentially hydrolysed, first to 2-amino-6-alkoxypurines, subsequently to guanine. The mass spectra of O(6)-alkyl-2'-deoxyguanosines (methyl and ethyl) and of the corresponding 2-amino-6-alkoxypurines were determined. The reaction of diazomethane with thymidine afforded O(4)-methylthymidine, in addition to the previously detected 3-methylthymidine.     

Vergleichende Untersuchungen zum Kontaktverhalten verschiedener Arten der Gattung Tilapia (Cichlidae,Pisces) und ihrer Bastarde

• 1 Tilapia tholloni (Substratbrüter), T. nilotica (weiblicher Maulbrüter) und T. heudeloti macrocephala (männlicher Maulbrüter) wurden künstlich erbrütet und ihre angeborenen Kontaktreaktionen in standardisierten Attrappenversuchen untersucht.
• 2 Das Kontaktverhalten muß während einer kritischen Phase (bei T. nilotica unter den angegebenen Versuchsbedingungen bis ungefähr zum 21. Tag nach dem Ablaichen) aktiviert werden, wenn es längere Zeit andauern soll (= Reaktionsphase). Die Reaktionsphase kann bei T. nilotica mehrere Wochen dauern. In ihr nimmt die Reaktionsstärke (Anzahl und Dauer der Kontakte) zunächst rasch zu, erreicht ein Maximum und nimmt dann allmählich wieder ab. Anstieg, Maximum und Abnahme sind an bestimmte Entwicklungsabschnitte gebunden, weitgehend unabhängig davon, ob die Tiere zuvor schon Kontaktverhalten geäußert haben oder nicht. Die Kontaktreaktionen unterscheiden sich u. a. durch die Dauer der Kontakte: tholloni = 0,7 Sek., nilotica = 86,5 Sek., heudeloti m. = 1,5 Sek. je Tag und Tier (Maximalwerte bei bestimmten, für alle Arten gleichen Versuchsbedingungen).
• 3 Von der Aufzuchttemperatur hängt es ab, in welchem Entwicklungsabschnitt die Reaktionsphase liegt. Das Reaktionsmaximum junger T. nilotica lag bei 24° C am 9., bei 29° C am Tag nach der Eiablage.
• 4 Geblendete nilotica-Jungfische zeigten nur zu Beginn der Reaktionsphase schwaches Kontaktverhalten, normale Tiere äußerten gegenüber einer durchsichtigen Glasattrappe abgeschwächtes, nur kurze Zeit dauerndes Kontaktverhalten. Das Kontaktverhalten wird durch mechanische (Strömung) und optische Reize ausgelöter und gesteuert.
• 5 Junge Maulbrüter aus kleinen Eiern erreichten eine längere Kontaktdauer als solche aus größeren. Nach künstlicher Reduktion der Dottermenge um 10–20%) erhöhte sich die Kontaktdauer bei jungen nilotica um 23,1%, die Zahl der Kontakte nahm gleichzeitig um 7,6% ab. Die ♀♀ der substratbrütenden T. mariae legen große Eier, die Jungen zeigten gegenüber Attrappen intensive Kontaktreaktionen. Es wird die Frage diskutiert, ob das Erreichen einer bestimmten Eigröße eine Voraussetzung für das Entstehen des Kontaktverhaltens gewesen sein könnte.
• 6 Die Kurzkontakte junger T. tholloni werden aus ihrer Orientierungsreaktion abgeleitet und als Vorstufe des Kontaktverhaltens gedeutet.
• 7 7. Mehrere Tilapia-Arten wurden künstlich gekreuzt. Bei Verwendung von tholloni-Sperma wiesen die Bastarde eine erhöhte Sterblichkeit auf. Aus der Kreuzung T. tholloni ♀ ～ T. nilotica ♂ (Substratbrüter ～ weiblicher Maulbrüter) gingen nur ♀♀ hervor. Die Kreuzung T. heudeloti macrocephala ～ T. nilotica (männlicher ～ weiblicher Maulbrüter) erbrachte fertile F₁- und F₂-Generationen sowie alle vier möglichen Rückkreuzungen. Bei der Vererbung des Kontaktverhaltens (gemessen an der Dauer der Kontakte) scheinen relativ wenig Erbfaktoren mitzuwirken, T. heudeloti m. erwies sich gegenüber nilotica als praevalent. Ein Teil der Bastarde aus der Kreuzung T. tholloni ♀ ～ T. nilotica ♂ (F₁) (Substratbrüter ～ weiblicher Maulbrüter) lag auf der Merkmalsskala zwischen den Ausgangsarten, der Rest verteilte sich sowohl auf den Bereich von tholloni als auch auf den Bereich von nilotica.

     

Using functional groups to investigate community response to environmental changes: two grassland case studies

Functional groups (FG) are an useful generalization to investigate environmental change effects on biotic communities. Assigning species to FGs is a contextual task and carries an arbitrary element, regardless of whether the grouping is obtained a priori or by sophisticated numerical methods. Using two grassland community case studies, we show that even simple FG allocation based on growth form, architecture and longevity (plants and mosses), or foraging characteristics (above-ground invertebrates) can be useful to increase our understanding of community processes. For example, the sensitivity of organisms to climate change increases with trophic rank and is higher in disturbed than in undisturbed communities. Complexity of interaction webs (in terms of web connectance), however, is larger in undisturbed than in disturbed communities. A significant and important relationship is likely to exist between anthropogenic disturbances, community complexity and the ecosystem effects of climate change. Trophic interactions may be disrupted much easier by climate changes in disturbed than in undisturbed communities where complexity may be buffering these effects.     

The testis temperature of anaesthetized quail

The temperatures of the left testis, and of the adjacent viscera, of 11 anaesthetized quail were measured. The testes averaged 0.6 degrees C cooler than the surrounding viscera and 1.3 degrees C cooler than the fight muscle. We suggest that endothermic reactions are the cause of the testicular temperature being below that of its immediate surroundings.     

Hypervariable minisatellites: recombinators or innocent bystanders?

It has become apparent in recent years that unexpectedly large numbers of minisatellites exist within the eukaryotic genome. Their use in genetics is well known, but as with any new class of sequence, there is also much speculation about their involvement in a range of biological processes. How much is known of their biology?     

Variations among cell lines in the synthesis of sphingolipids in de novo and recycling pathways

There are several pathways for the incorporation of sugars into glycosphingolipids (GSL). Sugars can be added to ceramide that contains sphinganine (dihydrosphingosine) synthesized de novo (pathway 1), to ceramide synthesized from sphingoid bases produced by hydrolysis of sphingolipids (pathway 2), and into GSL recycling from the endosomal pathway through the Golgi (pathway 3). We reported previously the surprising observation that SW13 cells, a human adrenal carcinoma cell line, synthesize most of their GSL in pathway 2. We now present data on the synthesis of GSL in four additional cell lines. Approximately 90% of sugar incorporation took place in pathway 2, and 10% or less in pathway 1, in human foreskin fibroblasts and NB41A3 neuroblastoma cells. In contrast, approximately 50-90% of sugar incorporation took place in pathway 1 in C2C12 myoblasts. The C2C12 cells divide more rapidly and synthesize 10-14 times as much GSL as the other three cell lines. In C6 glioma cells, approximately 30% of sugar incorporation occurred in pathway 1 and 60% in pathway 2. There was no relation between the utilization of pathways for GSL and sphingomyelin synthesis in foreskin fibroblasts and C2C12 cells. In both cells pathways 1 and 2 each accounted for 50% of incorporation of choline into sphingomyelin. In five of the six cell lines that we have studied, most GSL synthesis takes place in pathway 2. We suggest that when the need for synthesis is relatively low, as in slowly dividing cells, GSL are synthesized predominantly from sphingoid bases salvaged from the hydrolytic pathway. When cells are dividing more rapidly, the need for increased synthesis is met by upregulating the de novo pathway.      

Live imaging of <Emphasis Type="Italic">Drosophila</Emphasis>gonad formation reveals roles for Six4 in regulating germline and somatic cell migration

Background  

Movement of cells, either as amoeboid individuals or in organised groups, is a key feature of organ formation. Both modes of migration occur during Drosophila embryonic gonad development, which therefore provides a paradigm for understanding the contribution of these processes to organ morphogenesis. Gonads of Drosophila are formed from three distinct cell types: primordial germ cells (PGCs), somatic gonadal precursors (SGPs), and in males, male-specific somatic gonadal precursors (msSGPs). These originate in distinct locations and migrate to associate in two intermingled clusters which then compact to form the spherical primitive gonads. PGC movements are well studied, but much less is known of the migratory events and other interactions undergone by their somatic partners. These appear to move in organised groups like, for example, lateral line cells in zebra fish or Drosophila ovarian border cells.     

Variation in the tyrosinase gene associated with a white humpback whale (Megaptera novaeangliae)

Tyrosinase-negative oculocutaneous albinism (OCA1A) is characterized by lifelong white hair and skin, a phenotype that has been described in most mammalian species worldwide. Tyrosinase is the key enzyme in melanin biosynthesis, and mutations in the tyrosinase gene result in OCA1A. We examined sequence variation at exon 1 of the tyrosinase gene in 66 humpback whale samples collected from the east coast of Australia, including an anomalously white humpback whale known as "Migaloo." We identified 3 novel variants, including a cytosine deletion that results in a premature stop codon in exon 1. The deletion truncates the tyrosinase protein including the putative catalytic domains that are essential for tyrosinase enzymatic activity. Migaloo was homozygous for this deletion, suggesting that the albino phenotype is a consequence of inactive tyrosinase caused by the frameshift in the tyrosinase gene.     

Who is eating what: diet assessment using next generation sequencing

The analysis of food webs and their dynamics facilitates understanding of the mechanistic processes behind community ecology and ecosystem functions. Having accurate techniques for determining dietary ranges and components is critical for this endeavour. While visual analyses and early molecular approaches are highly labour intensive and often lack resolution, recent DNA-based approaches potentially provide more accurate methods for dietary studies. A suite of approaches have been used based on the identification of consumed species by characterization of DNA present in gut or faecal samples. In one approach, a standardized DNA region (DNA barcode) is PCR amplified, amplicons are sequenced and then compared to a reference database for identification. Initially, this involved sequencing clones from PCR products, and studies were limited in scale because of the costs and effort required. The recent development of next generation sequencing (NGS) has made this approach much more powerful, by allowing the direct characterization of dozens of samples with several thousand sequences per PCR product, and has the potential to reveal many consumed species simultaneously (DNA metabarcoding). Continual improvement of NGS technologies, on-going decreases in costs and current massive expansion of reference databases make this approach promising. Here we review the power and pitfalls of NGS diet methods. We present the critical factors to take into account when choosing or designing a suitable barcode. Then, we consider both technical and analytical aspects of NGS diet studies. Finally, we discuss the validation of data accuracy including the viability of producing quantitative data.