Clique Size and Network Characteristics in Hyperlink Cinema

Hyperlink cinema is an emergent film genre that seeks to push the boundaries of the medium in order to mirror contemporary life in the globalized community. Films in the genre thus create an interacting network across space and time in such a way as to suggest that people’s lives can intersect on scales that would not have been possible without modern technologies of travel and communication. This allows us to test the hypothesis that new kinds of media might permit us to break through the natural cognitive constraints that limit the number and quality of social relationships we can manage in the conventional face-to-face world. We used network analysis to test this hypothesis with data from 12 hyperlink films, using 10 motion pictures from a more conventional film genre as a control. We found few differences between hyperlink cinema films and the control genre, and few differences between hyperlink cinema films and either the real world or classical drama (e.g., Shakespeare’s plays). Conversation group size seems to be especially resilient to alteration. It seems that, despite many efficiency advantages, modern media are unable to circumvent the constraints imposed by our evolved psychology.     

Lymphocytic Choriomeningitis Virus Infection in FVB Mouse Produces Hemorrhagic Disease

The viral family Arenaviridae includes a number of viruses that can cause hemorrhagic fever in humans. Arenavirus infection often involves multiple organs and can lead to capillary instability, impaired hemostasis, and death. Preclinical testing for development of antiviral or therapeutics is in part hampered due to a lack of an immunologically well-defined rodent model that exhibits similar acute hemorrhagic illness or sequelae compared to the human disease. We have identified the FVB mouse strain, which succumbs to a hemorrhagic fever-like illness when infected with lymphocytic choriomeningitis virus (LCMV). FVB mice infected with LCMV demonstrate high mortality associated with thrombocytopenia, hepatocellular and splenic necrosis, and cutaneous hemorrhage. Investigation of inflammatory mediators revealed increased IFN-γ, IL-6 and IL-17, along with increased chemokine production, at early times after LCMV infection, which suggests that a viral-induced host immune response is the cause of the pathology. Depletion of T cells at time of infection prevented mortality in all treated animals. Antisense-targeted reduction of IL-17 cytokine responsiveness provided significant protection from hemorrhagic pathology. F1 mice derived from FVB×C57BL/6 mating exhibit disease signs and mortality concomitant with the FVB challenged mice, extending this model to more widely available immunological tools. This report offers a novel animal model for arenavirus research and pre-clinical therapeutic testing.     

Finite-size effects of Kirkwood–Buff integrals from molecular simulations

The modelling of thermodynamic properties of liquids from local density fluctuations is relevant to many chemical and biological processes. The Kirkwood–Buff (KB) theory connects the microscopic structure of isotropic liquids with macroscopic properties such as partial derivatives of activity coefficients, partial molar volumes and compressibilities. Originally, KB integrals were formulated for open and infinite systems which are difficult to access with standard Molecular Dynamics (MD) simulations. Recently, KB integrals for finite and open systems were formulated (J Phys Chem Lett. 2013;4:235). From the scaling of KB integrals for finite subvolumes, embedded in larger reservoirs, with the inverse of the size of these subvolumes, estimates for KB integrals in the thermodynamic limit are obtained. Two system size effects are observed in MD simulations: (1) effects due to the size of the simulation box and the size of the finite subvolume embedded in the simulation box, and (2) effects due to computing radial distribution functions (RDF) from a closed and finite system. In this study, we investigate the two effects in detail by computing KB integrals using the following methods: (1) Monte Carlo simulations of finite subvolumes of a liquid with an analytic RDF and (2) MD simulations of a WCA mixture for various simulation box sizes, but at the same thermodynamic state. We investigate the effect of the size of the simulation box and quantify the differences compared to KB integrals computed in the thermodynamic limit. We demonstrate that calculations of KB integrals should not be extended beyond half the size of the simulation box. For finite-size effects related to the RDF, we find that the Van der Vegt correction (J Chem Theory Comput. 2013;9:1347) yields the most accurate results.     

Engineering Camelina sativa (L.) Crantz for enhanced oil and seed yields by combining diacylglycerol acyltransferase1 and glycerol‐3‐phosphate dehydrogenase expression

Plant seed oil‐based liquid transportation fuels (i.e., biodiesel and green diesel) have tremendous potential as environmentally, economically and technologically feasible alternatives to petroleum‐derived fuels. Due to their nutritional and industrial importance, one of the major objectives is to increase the seed yield and oil production of oilseed crops via biotechnological approaches. Camelina sativa, an emerging oilseed crop, has been proposed as an ideal crop for biodiesel and bioproduct applications. Further increase in seed oil yield by increasing the flux of carbon from increased photosynthesis into triacylglycerol (TAG) synthesis will make this crop more profitable. To increase the oil yield, we engineered Camelina by co‐expressing the Arabidopsis thaliana (L.) Heynh. diacylglycerol acyltransferase1 (DGAT1) and a yeast cytosolic glycerol‐3‐phosphate dehydrogenase (GPD1) genes under the control of seed‐specific promoters. Plants co‐expressing DGAT1 and GPD1 exhibited up to 13% higher seed oil content and up to 52% increase in seed mass compared to wild‐type plants. Further, DGAT1‐ and GDP1‐co‐expressing lines showed significantly higher seed and oil yields on a dry weight basis than the wild‐type controls or plants expressing DGAT1 and GPD1 alone. The oil harvest index (g oil per g total dry matter) for DGTA1‐ and GPD1‐co‐expressing lines was almost twofold higher as compared to wild type and the lines expressing DGAT1 and GPD1 alone. Therefore, combining the overexpression of TAG biosynthetic genes, DGAT1 and GPD1, appears to be a positive strategy to achieve a synergistic effect on the flux through the TAG synthesis pathway, and thereby further increase the oil yield.     

Consistent associations with beneficial bacteria in the seed endosphere of barley (Hordeum vulgare L.)

The importance of the plant microbiome for host fitness has led to the concept of the “plant holobiont”. Seeds are reservoirs and vectors for beneficial microbes, which are very intimate partners of higher plants with the potential to connect plant generations. In this study, the endophytic seed microbiota of numerous barley samples, representing different cultivars, geographical sites and harvest years, was investigated. Cultivation-dependent and -independent analyses, microscopy, functional plate assays, greenhouse assays and functional prediction were used, with the aim of assessing the composition, stability and function of the barley seed endophytic bacterial microbiota. Associations were consistently detected in the seed endosphere with Paenibacillus, Pantoea and Pseudomonas spp., which were able to colonize the root with a notable rhizocompetence after seed germination. In greenhouse assays, enrichment with these bacteria promoted barley growth, improved mineral nutrition and induced resistance against the fungal pathogen Blumeria graminis. We demonstrated here that barley, an important crop plant, was consistently associated with beneficial bacteria inside the seeds. The results have relevant implications for plant microbiome ecology and for the holobiont concept, as well as opening up new possibilities for research and application of seed endophytes as bioinoculants in sustainable agriculture.     

Are mountain gods vindictive? Competing images of the Japanese alpine landscape

This article underscores the importance of folk religious concepts in understanding the way in which people interact with the environment that envelops and sustains them. Images of rural Japan have drawn almost exclusively on the tradition of irrigated rice cultivation combined with ancestor worship. Alternative concepts have been overlooked or ignored, fostering the sense of a uniform heritage. The author highlights one such alternative, which derives from the tradition of hunting, gathering, and slash-and-burn cultivation within a spirit-imbued landscape. The contrast between perspectives is illustrated by a historical encounter between a British mountaineer and the residents of two communities located at different elevations within the same watershed.  

Résumé

L'auteur souligne l'importance des concepts religieux populaires dans la compréhension des interactions entre les gens et l'environnement qui les entoure et assure leur subsistance. Les images du Japon rural ont tourné presque exclusivement autour de la tradition de la culture irriguée du riz et du culte des ancêtres. Les concepts alternatifs ont été méconnus ou ignorés, favorisant ainsi la perception d'un patrimoine culturel uniforme. L'auteur met en évidence une de ces alternatives, issue de la tradition de la chasse, de la cueillette et de la culture sur brûlis, dans un paysage habité par les esprits. Le contraste entre les points de vue est illustré par une rencontre historique entre un alpiniste britannique et les habitants de deux villages situés à des altitudes différentes dans un même bassin versant.     

A REANALYSIS OF NEST STRUCTURE IN THE WEAVERS (PLOCEINAE) USING NUMERICAL TAXONOMIC TECHNIQUES

Variables of nest architecture and construction behaviour of 62 species of ploceine finches studied by Crook (1963) were reanalysed using multivariate statistical techniques. Phenetic assessments were based on 38 two-state characters for 48 OTUs. Product moment correlation coefficients and average distance coefficients were used as measures of similarity, and species were clustered using the unweighted pair-group method with arithmetic averages. A three-dimensional model was constructed of species plotted with respect to the first three principal components extracted from a matrix of correlations among characters. Principal component and factor analytic techniques were employed to determine trends in character variation. The phenetic affinities expressed in the 3-D model and two phenograms show many similarities to the phenetic groupings deduced by Crook. However, there were also some differences in interpretation. Crook's Modes C and D were shown as distinct clusters in my analyses, but Modes A and B did not separate completely. In particular, the globular nest of P. baglafecht of Mode A, Type IV, grouped with kidney-shaped nests of species of Mode B, Type Va. The treatment of P. pelzelni, P. madagascariensis, and P. philippinus in my analysis differed somewhat from Crook's. The resulting cluster of F. sechellarum and M. malimbicus brought out some effects of standardising data on resulting interpretations of similarity. Species within the subtypes of Crook usually remained close together, but the affinities between subtypes (and types) often differed between our studies. The results of factor and principal component analyses indicate that the main trends in character variation concern those traits found together in (a) M. rubriceps; (b) A. unicolor and Pa. superciliosus; (c) forest birds; and (d) non-forest birds. These groups also are the main clusters. Differences in Crook's and my results are discussed and some of the advantages of utilising numerical techniques to describe similarity are mentioned.     

2,6-Diaryl-4-acylaminopyrimidines as potent and selective adenosine A(2A) antagonists with improved solubility and metabolic stability

In this report, the strategy and outcome of expanding SAR exploration to improve solubility and metabolic stability are discussed. Compound 35 exhibited excellent potency, selectivity over A(1) and improved solubility of >4 mg/mL at pH 8.0. In addition, compound 35 had good metabolic stability with a scaled intrinsic clearance of 3 mL/min/kg (HLM) and demonstrated efficacy in the haloperidol induced catalepsy model.