Mode of uptake of insoluble solid substrates by microorganisms. II: Uptake of solid n-alkanes by yeast and bacterial species

Using two species of yeast and one of bacterium, evidence has ben obtained which indicates that the microbial uptake of solid alkane powders occurs primarily through a substrate solubilization mechanism. EDTA, a strong inhibitor of hydrocarbon solubilization by the cells, inhibited the growth of these organisms on alkane powder; the inhibition could be removed vai a supply of artificially solubilized alkane. One of the yeast strians, which was a mutant incapable of growing on solid alkane powder and liquid alkane, could grow very well on artifically solubilized alkanes. It was demonstrated that the solid alkane solubilization rate during microbial growth could satisfactorily account for the maximal alkane uptake rate actully observed during growth. The specificity of solubilization for the solid alkane used as the growth substrate was demonstrated.     

Population biology of Avena

Summary Surveys for polymorphisms in natural populations of A. barbata sampled in California grasslands had provided evidence for widespread monomorphism and rather localized polymorphic areas in the north coastal and San Francisco regions, based on a set of morphological and isoenzymatic marker loci. Since this species, like many other annuals, was introduced from the Mediterranean region during the Spanish mission period, a comparative study of the Canadian-Welsh collections of Avena species from the Mediterranean region was undertaken using various plant characters and starch gel electrophoresis to analyze variants for esterase, phosphatase and peroxidase systems. A total of 96 samples including 73 of A. barbata and 23 of A. hirtula were studied and the results were scored to compute the polymorphism indices. In both species, only 10 to 15 percent sites showed any significant degree of polymorphism of which a majority seemed to originate from localized regions in Italy and Turkey; a part of this observed lack of within-sample variation might be the result of small sample size. In general, the patterns of variation in A. barbata from the California surveys and the present analyses seemed to be very similar and raised some interesting questions on (a) the colonizing history of introduced materials (b) the factors underlying such marked patterns of geographical variation, and (c) the current evolutionary changes occurring in these two broad, disjunct areas of species distribution.

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Zusammenfassung Untersuchungen der Polymorphismen in natürlichen Populationen von A. barbata im kalifornischen Weideland hatten einerseits zum Nachweis eines weit verbreiteten Monomorphismus und andererseits streng lokalisierter polymorpher Bereiche in der nördlichen Küsten- und San Francisco-Region geführt, wobei eine Anzahl morphologischer und isoenzymatischer Markerloci zugrunde gelegt wurde. Da diese Art, wie viele andere Annuelle auch, während der spanischen Missionsperiode aus der Mittelmeerregion eingeführt wurde, wurde eine vergleichende Untersuchung der Canadian-Welsh-Sammlungen von Avena-Arten aus der Mittelmeerregion anhand verschiedener Merkmale der Pflanzen und der Stärkegelelektrophorese-Untersuchung auf Esterase-, Phosphatase- und Peroxydase-Systeme durchgeführt. Es wurde eine Gesamtheit von 96 Stichproben, bestehend aus 73 A. barbata und 23 A. hirtula, untersucht und die Ergebnisse zur Berechnung von Polymorphismus-Indices verwendet. In beiden Arten zeigten nur 10 bis 15% der Herkünfte einen signifikanten Polymorphismusgrad. Von ihnen scheint die Mehrzahl von lokalisierten Regionen in Italien und Griechenland abzustammen. Ein Teil des beobachteten Fehlens einer Variation innerhalb der Stichproben könnte eine Folge des geringen Stichprobenumfangs sein. Im allgemeinen scheinen die Variationsmuster der kalifornischen Untersuchungen und die der vorliegenden Analysen von A. barbata sehr ähnlich zu sein. Das führt zu einigen interessanten Fragen nach a) der Besiedelungsgeschichte des eingeführten Materials, b) den Faktoren, die derart auffallenden Mustern der geographischen Variation unterliegen und c) den laufenden evolutionären Änderungen, die in diesen beiden großen, voneinander getrennten Gebieten der Artverteilung auftreten.

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This work was supported in part by a grant from the National Science Foundation (GB 8627).     

Effect of certain inorganic chemicals on growth and spore germination of Alternaria tenuis auct., the fungus causing core rot of mandarin oranges in India

Summary Laboratory studies to determine the tolerance of an isolate ofAlternaria tenuis causing a black core rot of mandarin oranges (Citrus reticulata) have shown that presence of low amounts of manganese, zinc, iron, copper, boron, and molybdenum in a synthetic medium stimulated growth and sporulation of the fungus. Concentrations of 20 ppm or more of copper sulphate, boric acid, and ammonium molybdate, however, caused significant reduction of growth. Conidia of the fungus were very sensitive to even low amounts of copper, zinc, and iron. Copper sulphate was most toxic to spore germination followed, in order of inhibitory effect, by zinc sulphate, ferrous sulphate, and boric acid. Ammonium molybdate and manganese sulphate were stimulatory to spore germination at 5 ppm. There was a positive correlation between percentage of spore germination and average length of germ tubes in different concentrations of various chemicals. The possibility of using copper sulphate, zinc sulphate, and ferrous sulphate as spray materials for trees and as dip for ripe fruits to prevent black core rot are discussed.Assoc. Professor and Research Assistant, respectively. Publication under journal series No. 27 from Experiment Station, U.P. Agricultural University.     

Virucidal Effect of Transient Electric Arcs in Aqueous Systems

Bacterial and animal viruses were inactivated by high voltage electrical discharges in water. The sensitivity of phages to the immediate component of this effect was correlated to the sensitivity to ultraviolet radiation. Transient electrical arcs in weak electrolytes also generated chemical compounds which were virucidal against phages T3, T5, and varphiX174 but were only slightly virucidal against phages T2 and T4.     

Seasonal changes in radioiodine uptake and epithelial cell height of the thyroid gland in the freshwater teleosts Esomus danricus (Ham.) and Mystus vittatus (bloch) under varying conditions of illumination

Summary The thyroid gland of Mystus vittatus and Esomus danricus showed seasonal activity in its epithelial cell height and radioiodine uptake. These two indices of activity agree in E. danricus. Under normal photoperiods both species exhibited two phases of optimum activity, one in April through May, the other in September. The active periods were characterized by high iodine uptake and increased follicular cell height. These peaks of activity alternated with more quiescent phases, minimal iodine uptake and low follicular epithelium. In specimens exposed to constant illumination the active and quiescent phases were advanced by two months. But for this change the general pattern of activity was the same as that in animals kept under normal photoperiodic conditions. Specimens subjected to total darkness showed a higher level of activity throughout the year in comparison to the other two groups. However, a distinct seasonal cycle, which was evident with normal photoperiods and continuous illumination, was absent in total darkness.I am greatly indebted to Dr. A. G. Sathyanesan, Banaras Hindu University, for his encouragement, and to Professor S. P. Ray-Chaudhuri, Banaras Hindu University, for providing laboratory facilities.     

SIRIUS. An automated method for the analysis of the preferred packing arrangements between protein groups

Automated methods have been developed to determine the preferred packing arrangement between interacting protein groups. A suite of FORTRAN programs, SIRIUS, is described for calculating and analysing the geometries of interacting protein groups using crystallographically derived atomic co-ordinates. The programs involved in calculating the geometries search for interacting pairs of protein groups using a distance criterion, and then calculate the spatial disposition and orientation of the pair. The second set of programs is devoted to analysis. This involves calculating the observed and expected distributions of the angles and assessing the statistical significance of the difference between the two. A database of the geometries of the 400 combinations of side-chain to side-chain interaction has been created. The approach used in analysing the geometrical information is illustrated here with specific examples of interactions between side-chains, peptide groups and particular types of atom. At the side-chain level, an analysis of aromatic-amino interactions, and the interactions of peptide carbonyl groups with arginine residues is presented. At the atomic level the analyses include the spatial disposition of oxygen atoms around tyrosine residues, and the frequency and type of contact between carbon, nitrogen and oxygen atoms. This information is currently being applied to the modelling of protein interactions.