From descriptive to predictive distribution models: a working example with Iberian amphibians and reptiles

Background

The two sympatric species of Tunisian desert ants, Cataglyphis bicolor and C. mauritanica, do not exhibit any differences in their foraging ecology, e.g. in food preferences and in their spatial and temporal activity patterns. Here we show that instead the two species markedly differ in their life histories.

Results

We analysed mtDNA of specimens that were collected along a 250-km transect. C. bicolor exhibited a genetically unstructured population (with the genetic and geographic distances among colonies not being correlated). On the contrary the populations of the polygynous C. mauritanica were clearly structured, i.e. exhibited a strong correlation between genetic and geographic distances. This difference is in accordance with large queen dispersal distances due to far-reaching mating flights in C. bicolor and small queen dispersal distances due to colony foundation by budding in C. mauritanica. Furthermore, wherever we found populations of both species to coexist within the same habitat, the habitat was used agriculturally. Mapping nest positions over periods of several years showed that plowing dramatically decreased the nest densities of either species.

Conclusion

We conclude that owing to its greater queen dispersal potential C. bicolor might be more successful in quickly re-colonizing disturbed areas, while the slowly dispersing C. mauritanica could later out-compete C. bicolor by adopting its effective nest-budding strategy. According to this scenario the observed sympatry of the two species might be an intermediate stage in which faster colonization by one species and more powerful exploitation of space by the other species have somehow balanced each other out. In conclusion, C. bicolor and C. mauritanica represent an example where environmental disturbances in combination with different life histories might beget sympatry in congeneric species with overlapping niches.     

Structural origins of fibrin clot rheology

The origins of clot rheological behavior associated with network morphology and factor XIIIa-induced cross-linking were studied in fibrin clots. Network morphology was manipulated by varying the concentrations of fibrinogen, thrombin, and calcium ion, and cross-linking was controlled by a synthetic, active-center inhibitor of FXIIIa. Quantitative measurements of network features (fiber lengths, fiber diameters, and fiber and branching densities) were made by analyzing computerized three-dimensional models constructed from stereo pairs of scanning electron micrographs. Large fiber diameters and lengths were established only when branching was minimal, and increases in fiber length were generally associated with increases in fiber diameter. Junctions at which three fibers joined were the dominant branchpoint type. Viscoelastic properties of the clots were measured with a rheometer and were correlated with structural features of the networks. At constant fibrinogen but varying thrombin and calcium concentrations, maximal rigidities were established in samples (both cross-linked and noncross-linked) which displayed a balance between large fiber sizes and great branching. Clot rigidity was also enhanced by increasing fiber and branchpoint densities at greater fibrinogen concentrations. Network morphology is only minimally altered by the FXIIIa-catalyzed cross-linking reaction, which seems to augment clot rigidity most likely by the stiffening of existing fibers.     

Characteristics of Cyclic AMP Transport by Marine Bacteria

Uptake and autoradiography experiments with natural populations of marine bacteria, seawater cultures, and cultured isolates showed that the high-affinity cyclic AMP transport system in marine bacteria has stringent structural requirements, is found in a minority of cells in mixed bacterial assemblages, and appears to be related to the culture growth state.     

Phylogeography of a widespread small carnivore,the western spotted skunk (Spilogale gracilis) reveals temporally variable signatures of isolation across western North America

We analyzed phylogeographic patterns in the western spotted skunk, Spilogale gracilis Merriam, 1890 (Carnivora: Mephitidae) in relation to historical events associated with Pre‐Pleistocene Divergence (PPD) and Quaternary climate change (QCC) using mitochondrial DNA from 97 individuals distributed across Western North America. Divergence times were generated using BEAST to estimate when isolation in putative refugia occurred. Patterns and timing of demographic expansion was performed using Bayesian skyline plot. Putative climatic refugia resulting from Quaternary climate change were identified using paleoecological niche modeling and divergence dates compared to major vicariant events associated with Pre‐Pleistocene conditions. We recovered three major mitochondrial clades corresponding to western North America (California, Baja, and across the Great Basin), east‐central North America (Texas, central Mexico, New Mexico), and southwestern Arizona/northwestern Mexico. Time to most recent common ancestor for S. gracilis occurred ~1.36 Ma. Divergence times for each major clade occurred between 0.25 and 0.12 Ma, with signature of population expansion occurring 0.15 and 0.10 Ma. Ecological niche models identified three potential climatic refugia during the Last Interglacial, (1) west coast of California and Oregon, (2) northwestern Mexico, and (3) southern Texas/northeastern Mexico as well as two refugia during the Last Glacial Maximum, (1) western USA and (2) southern Texas/northeastern Mexico. This study supports PPD in shaping species‐level diversity compared to QCC‐driven changes at the intraspecific level for Spilogale, similar to the patterns reported for other small mammals (e.g., rodents and bats). Phylogeographic patterns also appear to have been shaped by both habitat and river vicariance, especially across the desert southwest. Further, continuing climate change during the Holocene coupled with anthropogenic modifications during the Anthropocene appears to be removing both of these barriers to current dispersal of western spotted skunks.     

Molecular Response of the Bloom-Forming Cyanobacterium, Microcystis aeruginosa, to Phosphorus Limitation

Cyanobacteria blooms caused by species such as Microcystis have become commonplace in many freshwater ecosystems. Although phosphorus (P) typically limits the growth of freshwater phytoplankton populations, little is known regarding the molecular response of Microcystis to variation in P concentrations and sources. For this study, we examined genes involved in P acquisition in Microcystis including two high-affinity phosphate-binding proteins (pstS and sphX) and a putative alkaline phosphatase (phoX). Sequence analyses among ten clones of Microcystis aeruginosa and one clone of Microcystis wesenbergii indicates that these genes are present and conserved within the species, but perhaps not the genus, as phoX was not identified in M. wesenbergii. Experiments with clones of M. aeruginosa indicated that expression of these three genes was strongly upregulated (50- to 400-fold) under low inorganic P conditions and that the expression of phoX was correlated with alkaline phosphatase activity (p < 0.005). In contrast, cultures grown exclusively on high levels of organic phosphorus sources (adenosine 5′-monophosphate, β-glycerol phosphate, and d-glucose-6-phosphate) or under nitrogen-limited conditions displayed neither high levels of gene expression nor alkaline phosphatase activity. Since Microcystis dominates phytoplankton assemblages in summer when levels of inorganic P (P_i) are often low and/or dominate lakes with low P_i and high organic P, our findings suggest this cyanobacterium may rely on pstS, sphX, and phoX to efficiently transport P_i and exploit organic sources of P to form blooms.     

A Chrome-Alum Preparation for Delicate and Difficult Fixations

A chrome-alum fixative is recommended as a reagent for general use. The basic formula is: C.P. chrome-alum, 3 g.; 40% formaldehyde, 30 ml.; glacial acetic acid, 2 ml.; distilled water, 238 ml. This fixative permits easy sectioning of yolk-rich amphibian embryos. It can be used to make permanent slides of Euglena showing the flagellum. It is a satisfactory fixative for insect larvae and fixes sharply the slime droplets of Planarians. Fixation should not exceed two hours or the material being fixed will swell. Rinses of 70% alcohol or water may follow the fluid. The fluid keeps well, does not harden tissues and gives good cytological detail.     

Molecular phylogeny of the major arthropod groups indicates polyphyly of crustaceans and a new hypothesis for the origin of hexapods

A phylogeny of the arthropods was inferred from analyses of amino acid sequences derived from the nuclear genes encoding elongation factor-1 alpha and the largest subunit of RNA polymerase II using maximum- parsimony, neighbor-joining, and maximum-likelihood methods. Analyses of elongation factor-1 alpha from 17 arthropods and 4 outgroup taxa recovered many arthropod clades supported by previous morphological studies, including Diplopoda, Myriapoda, Insecta, Hexapoda, Branchiopoda (Crustacea), Araneae, Tetrapulmonata, Arachnida, Chelicerata, and Malacostraca (Crustacea). However, counter to previous studies, elongation factor-1 alpha placed Malacostraca as sister group to the other arthropods. Branchiopod crustaceans were found to be more closely related to hexapods and myriapods than to malacostracan crustaceans. Sequences for RNA polymerase II were obtained from 11 arthropod taxa and were analyzed separately and in combination with elongation factor-1 alpha. Results from these analyses were concordant with those derived from elongation factor-1 alpha alone and provided support for a Hexapoda/Branchiopoda clade, thus arguing against the monophyly of the traditionally defined Atelocerata (Hexapoda + Myriapoda).