Temperature responses of mesophyll conductance differ greatly between species

The temperature responses of mesophyll conductance (g_m) were investigated for nine species using carbon isotope techniques combining tunable diode laser spectroscopy and gas exchange measurements. Species included the evergreen trees Eucalyptus pauciflora and Quercus engelmannii; the tropical evergreen tree Lophostemon confertus; as well as the herbaceous species Nicotiana tabacum, Oryza sativa, Triticum aestivum, Gossypium hirsutum, Glycine max and Arabidopsis thaliana. Responses varied from a two‐ to threefold increase in mesophyll conductance between 15 and 40 °C observed for N. tabacum, G. hirsutum, G. max and E. pauciflora to almost no change in L. confertus and T. aestivum. To account for the different temperature responses between species, we suggest that there must be variation in both the activation energy for membrane permeability and the effective pathlength for liquid phase diffusion. Stomatal conductance was relatively independent of increases in leaf temperature and concomitant increases in leaf to air vapour pressure difference. Two exceptions were Eucalyptus and Gossypium, where stomatal conductance increased with temperature up to 35 °C despite increasing leaf to air vapour pressure. For a given species, temperature responses of stomatal and mesophyll conductance were independent of one another.     

Asymmetrical effects of mesophyll conductance on fundamental photosynthetic parameters and their relationships estimated from leaf gas exchange measurements

Worldwide measurements of nearly 130 C₃ species covering all major plant functional types are analysed in conjunction with model simulations to determine the effects of mesophyll conductance (g_m) on photosynthetic parameters and their relationships estimated from A/C_i curves. We find that an assumption of infinite g_m results in up to 75% underestimation for maximum carboxylation rate V_cmax, 60% for maximum electron transport rate J_max, and 40% for triose phosphate utilization rate T_u. V_cmax is most sensitive, J_max is less sensitive, and T_u has the least sensitivity to the variation of g_m. Because of this asymmetrical effect of g_m, the ratios of J_max to V_cmax, T_u to V_cmax and T_u to J_max are all overestimated. An infinite g_m assumption also limits the freedom of variation of estimated parameters and artificially constrains parameter relationships to stronger shapes. These findings suggest the importance of quantifying g_m for understanding in situ photosynthetic machinery functioning. We show that a nonzero resistance to CO₂ movement in chloroplasts has small effects on estimated parameters. A non‐linear function with g_m as input is developed to convert the parameters estimated under an assumption of infinite g_m to proper values. This function will facilitate g_m representation in global carbon cycle models.     

Contrasts between dystrophic and clearwater lakes in the long‐term effects of acidification on cladoceran assemblages

1. Most studies on zooplankton responses to acidification have focused on clearwater lakes with a dramatic acidification history. The role of dissolved organic carbon (DOC) in moderating zooplankton responses to acidification in naturally acidic, dystrophic lakes is less well understood and is partially impeded by a lack of baseline data. 2. Cladocera leave identifiable remains preserved in lake sediments that can be used to provide information on pre‐industrial species assemblages and their responses to environmental stressors such as acidification. Therefore, we used palaeolimnological approaches to track cladoceran assemblage responses to acidification since c.1850 (inferred from sedimentary diatom assemblages) in three acidified lakes in Kejimkujik National Park (Nova Scotia, Canada) that differ markedly in DOC content. These include two highly dystrophic lakes (Kejimkujik and Pebbleogittch lakes), and one clearwater lake (Beaverskin Lake). 3. In dystrophic Pebbleogittch Lake, an increase in the acid‐tolerant, jelly‐clad, pelagic taxon Holopedium glacialis occurred coincident with diatom‐inferred pH (DI‐pH) declines, but no other notable cladoceran assemblage shifts occurred. Similarly, Cladocera assemblages did not appear to respond to lakewater acidification in dystrophic Kejimkujik Lake. 4. In contrast, in the clearwater Beaverskin Lake, several observed shifts in cladoceran assemblage corresponded to DI‐pH declines, including an increase in the proportion of littoral taxa and an increase in Hill’s N2 species diversity. This may indicate increased water clarity as a result of acidification‐related decreases in DOC, which may have enhanced growth of emergent aquatic macrophytes and improved visibility for planktivorous fish, leading to increased predation on pelagic taxa. Species shifts within the littoral assemblage of Beaverskin Lake may reflect the differing tolerances of littoral taxa to low pH and aluminium toxicity. 5. Overall, our results suggest that cladoceran assemblages in naturally acidic, dystrophic lakes may be resilient against additional pH declines related to industrial emissions of acidifying agents, as dystrophic lakes are less vulnerable to increased aluminium toxicity and acidification‐induced increases in water clarity and often have a pre‐industrial cladoceran assemblage already adapted to acidic conditions.     

Invertebrate feeding and emergence timing vary among streams along a gradient of riparian forest composition

1. The quality of allochthonous organic matter influences the transfer of energy and nutrients through recipient food webs. We investigated the effects of variation in the composition of riparian forests (deciduous, mixed, coniferous) on the elemental imbalance between basal resources and consumers in streams, on consumer feeding and on potential feedbacks to riparian systems via emergent aquatic insects. 2. We tested for differences in elemental stoichiometry (carbon/nitrogen/phosphorus; C/N/P) and stable isotopes (?¹³C and ?¹⁵N) between deciduous (red alder, Alnus rubra) and coniferous litter (western hemlock, Tsuga heterophylla) and among abundant stream invertebrates from streams draining different riparian forests (deciduous, mixed, coniferous). We then assessed shredder feeding preferences (of the trichopteran, Lepidostoma unicolor) for litter incubated in streams with these different forest types and quantified differences in emergence of aquatic and semiaquatic insects among streams. 3. Both initial (non‐incubated) and stream‐incubated A. rubra litter had lower C/N and C/P and were more depleted in ?¹³C and more enriched in ?¹⁵N, than T. heterophylla litter. The stoichiometry of invertebrate tissue did not vary significantly among taxa or with riparian forest composition. A predator (the plecopteran Chloroperlidae) and a collector‐gatherer (the ephemeropteran Paraleptophlebia gregalis) from mixed and coniferous forest streams were more enriched in ?¹³C and ?¹⁵N isotopes than those from deciduous streams, suggesting that low availability of palatable, N‐rich A. rubra litter may constrain energy flow and nutrient fluxes up through the food web in systems with little or no A. rubra. 4. Consumption of A. rubra litter by L. unicolor was most rapid when the litter had been incubated in streams draining deciduous forests, whereas consumption of T. heterophylla litter was not influenced by the composition of the riparian forest. 5. Peak insect emergence from coniferous forest streams occurred 1 month earlier and at 2–3× higher density than from mixed and deciduous‐forest streams, but total biomass of emerging insects throughout the study period was not different between forest types. Assemblages of emerging insects were different between deciduous and coniferous forest streams, and taxon richness and diversity were nearly 2× greater from deciduous than from coniferous forest streams. 6. Forest composition influences stream invertebrate feeding and could have reciprocal feedbacks onto riparian systems via altered insect emergence.     

Integrating genetic information into plant breeding programmes: how will we produce varieties from molecular variation,using bioinformatics?

The development of new varieties of crop plants is ongoing for plant breeders and progress since the Green Revolution has been steady, if not dramatic. With the recent sequencing of Arabidopsis thaliana and of rice the development of both physical and informational resources has entered a new phase. This paper examines the state of plant bioinformatics as it is now and as it is likely to develop in the future. It also looks rather further forward to what crop scientists might want from bioinformatics, before examining the likely physiological targets for sustainability traits and the prospects for their improvement in wheat. Wheat is taken as the focus crop because it is potentially one of the most dif. Cult to work with in molecular terms, both because of its large hexaploid genome size and because of its considerable genetic distance from the most information rich plant species, Arabidopsis. Finally, we examine how these tools might be used to track down the underlying genes controlling sustainability traits and how these may then be exploited in plant breeding programmes using marker‐ assisted selection.     

Patterns in the diversity and distribution of epiphytes and vines in a New Zealand forest

Abstract Plants that rely on other plants for support (i.e. epiphytes and vines) are common in many forest ecosystems. However, they are poorly understood relative to terrestrial plants, especially in the Southern Hemisphere. To help bridge this gap, we evaluated the diversity and distribution of vascular epiphytes and vines on seven common tree species in a conifer‐broadleaf forest on New Zealand's North Island. Ground‐based surveys of 274 host trees were used to test whether epiphyte and vine diversity increased with tree diameter, and whether diversity‐diameter relationships differed among host tree species. Occurrence patterns of individual epiphyte and vine species were also assessed. We first evaluated the accuracy of ground‐based inventories by comparing surveys of trees made from the ground to those made from a canopy walkway. On average, 1 in 10 species of epiphytes and vines were unseen from the ground. However, sampling accuracy did not differ among the three host tree species growing along the walkway, suggesting unbiased comparisons could be made between hosts. Results from ground‐based surveys showed that species diversity of epiphytes and vines increased with host tree diameter. However, epiphytes showed stronger diversity‐diameter relationships than vines. Epiphyte diversity increased markedly in four host species and less strongly in the remaining three host species. Conversely, vines showed weak diversity‐diameter relationships in all host species. Occurrence patterns of individual species helped to explain diversity‐diameter relationships. All common epiphyte species occurred more frequently on large trees, regardless of host species, but occurrence patterns in most vine species were unrelated to tree size. Rather, the vines often showed strong host ‘preferences’. Overall results illustrate a rich diversity of distributional patterns in New Zealand's epiphytes and vines, and suggest that a similarly diverse set of ecological and evolutionary processes are responsible for them.     

Identification of 13 polymorphic microsatellite loci in the zebra finch,Taeniopygia guttata (Passeridae,Aves)

Polymorphic microsatellite loci were identified in order to determine paternity in a captive population of the zebra finch, Taeniopygia guttata. Primer sets from 93 published passerine microsatellite sequences were tested for cross‐species amplification. Thirteen loci were found to be polymorphic, of which, eight displayed null alleles and one locus (Ase50) was found to be Z‐chromosome linked.     

Nematode‐specific PCR primers for the 18S small subunit rRNA gene

A set of polymerase chain reaction primers were designed, which amplify a c. 1 kb fragment of the 18S ribosomal DNA gene, and are specific to the phylum Nematoda. These have proven useful in isolating nematode genes from samples mixed with other biological material, particularly with application to DNA barcoding. Optimal reaction conditions are described. These primers have successfully amplified the correct fragment from a wide phylogenetic range of nematodes, and have so far generated no sequences from any other organismal group.