Integrative taxonomy,or iterative taxonomy?

The recently introduced term ‘integrative taxonomy’ refers to taxonomy that integrates all available data sources to frame species limits. We survey current taxonomic methods available to delimit species that integrate a variety of data, including molecular and morphological characters. A literature review of empirical studies using the term ‘integrative taxonomy’ assessed the kinds of data being used to frame species limits, and methods of integration. Almost all studies are qualitative and comparative – we are a long way from a repeatable, quantitative method of truly ‘integrative taxonomy’. The usual methods for integrating data in phylogenetic and population genetic paradigms are not appropriate for integrative taxonomy, either because of the diverse range of data used or because of the special challenges that arise when working at the species/population boundary. We identify two challenges that, if met, will facilitate the development of a more complete toolkit and a more robust research programme in integrative taxonomy using species tree approaches. We propose the term ‘iterative taxonomy’ for current practice that treats species boundaries as hypotheses to be tested with new evidence. A search for biological or evolutionary explanations for discordant evidence can be used to distinguish between competing species boundary hypotheses. We identify two recent empirical examples that use the process of iterative taxonomy.     

Eucalyptus leachate inhibits reproduction in a freshwater fish

1. Dissolved organic carbon (DOC) can induce lethal and sub‐lethal effects in exposed biota via hypoxic blackwater events and the toxicity of leached compounds. Little is known of how DOC exposure affects fish reproduction despite the fact that its release can coincide with spawning‐associated flow pulses. 2. River red gum (Eucalyptus camaldulensis) leaf leachate is a major source of DOC in Australian freshwaters and includes the toxic plant secondary metabolites polyphenols and tannins. High concentrations of leachate are released when leaves on floodplains or dry stream channels are inundated by water. 3. Southern pygmy perch (Nannoperca australis) from naturally high and naturally low Eucalyptus leachate environments in south‐east Australia were exposed to elevated leachate levels to investigate the effects of DOC on reproduction and to explore whether response patterns were consistent with populations becoming locally adapted to historical leachate levels. 4. Fish exposed to leachate were half as likely to reach sexual maturity as control fish. Fish from a naturally high‐exposure population tended to reach sexual maturity earlier than those from a naturally low‐exposure population. Leachate exposure had no effect on either egg size or fecundity. 5. Our results suggest that leachate‐exposed mothers did not reproduce because they were physiologically stressed or perceive the environment to be unsuitable, which raises the potential of plastic or adaptive responses to this stressor. The negative sub‐lethal effects observed have important fitness implications for individuals, the viability of populations and the management of environmental flows and riparian zones.     

Effects of Tissue Collection Methods on Morphometrics and Survival of Captive Neonatal Northern Bobwhite

ABSTRACT We assessed effects of tissue collection methods (i.e., patagial microbiopsy and down feathers) and chick age at sampling on morphometrics and 21-day survival of 600 captive neonatal northern bobwhite (Colinus virginianus). We observed minimal effects on morphometrics and no difference in survival among patagial microbiopsy (x̄ = 0.96 ± 0.03), down feathers (x̄ = 0.92 ± 0.04), and control (x̄ = 0.86 ± 0.05) methods. DNA analysis from patagial microbiopsy, down feather, and egg tooth samples showed greater concentrations of DNA from patagial microbiopsy (x̄ = 10.28 ± 1.74 μg/ml) than either down feather (x̄ = 4.10 ± 1.74 μg/ml) or egg teeth (x̄ = 2.35 ± 1.74 μg/ml).     

Effect of host diet and adult parasitoid diet on egg load dynamics and egg size of braconid parasitoids attacking Anastrepha ludens

The quantity and quality of host nutrients can affect fitness‐related traits in hymenopteran parasitoids, including oogenesis. The present study tested the prediction that a high host quality will influence oogenesis‐related traits positively in synovigenic parasitoids, and that a high‐quality adult parasitoid diet can positively affect the same parameters, potentially compensating for development on low‐quality hosts. Four braconid parasitoid species with contrasting life histories are reared on a low‐quality diet [Anastrepha ludens Loew (Diptera: Tephritidae) larvae reared on mango] or a high‐quality (artificial) diet. Adult parasitoids are provided with a high‐quality (honey ad libitum), moderate‐quality (honey every other day) or low‐quality (guava pulp) diet. Generalist species that encounter high variation in host quality naturally are predicted to be more flexible in dealing with nutrient shortfalls than specialist species. By contrast to the predictions, low‐quality hosts yield parasitoids with higher egg loads in two species: Opius hirtus Fisher and Diachasmimorpha longicaudata Ashmead. However, as predicted, a high‐quality adult diet exerts a positive effect on egg load (Utetes anastrephae Viereck), egg size (Doryctobracon crawfordi Viereck) and egg maturation rate (D. longicaudata, O. hirtus and U. anastrephae). The generalist D. longicaudata varies in egg load and maturation rate depending on host quality and adult diet, respectively. Evidence of the combined effect of both factors on parasitoid fertility is presented for the specialist O. hirtus. The theoretical and practical implications of these findings are discussed.     

Khaosokia caricoides, a new genus and species of Cyperaceae from Thailand

Khaosokia caricoides , D.A. Simpson, Chayam. & J. Parn., a newly discovered genus and species of Cyperaceae is described and illustrated. The genus is characterized by a narrowly paniculate dioecious inflorescence with 2–4 nodes, each of the nodes having a leaf-like inflorescence bract that exceeds the inflorescence. Spikelets in both sexes are linear-cylindric and each flower has seven perianth bristles. The nutlet was immature in the specimens examined. The photosynthetic pathway is C₃. Khaosokia is endemic to limestone cliffs in peninsular Thailand; its conservation status is assessed as Vulnerable (VU B1a + 2a). It has affinities to tribes Cariceae, Dulichieae and some members of Scirpeae, but the exact nature of these relationships has yet to be determined. A revised key to the genera of Cyperaceae in Thailand is presented.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 149 , 357–364.