Carbon dynamics in an ultra-oligotrophic epishelf lake (Beaver Lake, Antarctica) in summer

1. Microbial plankton dynamics in an ultra‐oligotrophic epishelf lake (Beaver Lake, Antarctica) were investigated over an austral summer (December 2002 to January 2003). The aim was to characterise carbon cycling in an environmentally extreme lake. 2. The lake had an unusual temperature profile with peak temperatures of 1.3–1.9 °C between 20 and 25 m. Photosynthetically active radiation penetrated to the lake bottom (110 m) on occasions. The ice cover underwent marked thinning and melting during the study period. 3. Chlorophyll a concentrations were consistently low, usually below 1 μg L^?1, with highest concentrations close to the lake bottom, where the photosynthetic elements showed strong autofluorescence. Mean photosynthetic nanoflagellates ranged between 34.9 × 10⁴ L^?1 ± 33.5 (23rd December) and 130.9 × 10⁴ L^?1 ± 112.3 (4th December). Highest photosynthetic activity was usually recorded below 25 m. Rates of carbon fixation varied between 0.089 μg C L^?1 h^?1 ± 0.002 and 0.579 μg C L^?1 h^?1 ± 0.156. Primary production was limited by low temperature and orthophosphate availability. 4. Mean bacterial concentration throughout the water column ranged between 9.3 × 10⁷ L^?1 ± 1.2 (23rd December) and 14.0 × 10⁷ L^?1 ± 1.8 (28th January). Bacterial production was low, less than 10% of primary production and ranged between 2.1 ng C L^?1 h^?1 ± 0.8 and 12 ng C L^?1 h^?1 ± 0.9. Highest rates coincided with times of highest primary production. On occasion dissolved organic carbon (DOC) concentrations dropped to 20 μg L^?1, probably below accurate limits of detection, suggesting that carbon substratum and phosphorus may have limited bacterial growth. 5. Heterotrophic nanoflagellates varied significantly over the summer from a mean of 26.6 × 10⁴ L^?1 ± 14.2 (23rd December) to 133.8 × 10⁴ L^?1 ± 33.5 (14th December). They imposed a significant grazing impact on the bacterioplankton, removing in excess of 100% of bacterial production in December. 6. The total organic carbon pool [DOC and particulate organic carbon (POC)] was below 600 μg L^?1. The ratio of DOC : POC ranged between 0.44 : 1 and 2.8 : 1 in the upper 40 m of the water column, and 1.8 : 1 and 3.7 : 1 in the lower waters. The microbial plankton contributed 1–29% of POC, thus detrital POC made up the largest fraction of the POC pool. 7. Beaver Lake is an extreme lacustrine ecosystem where heterotrophic processes occasionally appear to be carbon limited. Significant summer ice‐melt, not seen in a previous opportunistic sampling, may be having an impact on the carbon cycle.     

Putting Parasemia in its phylogenetic place: a molecular analysis of the subtribe Arctiina (Lepidoptera)

Despite being popular among amateur and professional lepidopterologists and posing great opportunities for evolutionary research, the phylogenetic relationships of tiger moths (Erebidae: Arctiinae) are not well resolved. Here we provide the first phylogenetic hypothesis for the subtribe Arctiina with the basic aim of clarifying the phylogenetic position of the Wood Tiger Moth Parasemia plantaginis Hübner, a model species in evolutionary ecology. We sampled 89 species in 52 genera within Arctiina s.l., 11 species of Callimorphina and two outgroup species. We sequenced up to seven nuclear genes (CAD, GAPDH, IDH, MDH, Ef1α, RpS5, Wingless) and one mitochondrial gene (COI) including the barcode region (a total of 5915 bp). Both maximum likelihood and Bayesian inference resulted in a well‐resolved phylogenetic hypothesis, consisting of four clades within Arctiina s.s. and a clade comprising spilosomine species in addition to Callimorphina and outgroups. Based on our results, we present a new classification, where we consider the Diacrisia clade, Chelis clade, Apantesis clade, Micrarctia Seitz and Arctia clade as valid genera within Arctiina s.s., whereas Rhyparia Hübner syn.n. and Rhyparioides Butler syn.n. are synonymized with Diacrisia Hübner; Neoarctia Neumoegen & Dyar syn.n. , Tancrea Püngeler syn.n. , Hyperborea Grum‐Grshimailo syn.n. , Palearctia Ferguson syn.n. , Holoarctia Ferguson syn.n. , Sibirarctia Dubatolov syn.n. and Centrarctia Dubatolov syn.n. are synonymized with Chelis Rambur; Grammia Rambur syn.n. , Orodemnias Wallengren syn.n. , Mimarctia Neumoegen & Dyar syn.n. , Notarctia Smith syn.n. and Holarctia Smith syn.n. are synonymized with Apantesis Walker; and Epicallia Hübner syn.n. , Eucharia Hübner syn.n. , Hyphoraia Hübner syn.n. , Parasemia Hübner syn.n. , Pericallia Hübner syn.n. , Nemeophila Stephens syn.n. , Ammobiota Wallengren syn.n. , Platarctia Packard syn.n. , Chionophila Guenée syn.n. , Eupsychoma Grote syn.n. , Gonerda Moore syn.n. , Platyprepia Dyar syn.n. , Preparctia Hampson syn.n. , Oroncus Seitz syn.n. , Acerbia Sotavalta syn.n. , Pararctia Sotavalta syn.n. , Borearctia Dubatolov syn.n. , Sinoarctia Dubatolov syn.n. and Atlantarctia Dubatolov syn.n. are synonymized with Arctia Schrank, leading to 33 new genus‐level synonymies. Our focal species Arctia plantaginis comb.n. is placed as sister to Arctia festiva comb.n. , another widespread aposematic species showing wing pattern variation. Our molecular hypothesis can be used as a basis when adding more species to the tree and tackling interesting evolutionary questions, such as the evolution of warning signalling and mimicry in tiger moths.     

Detection of Genomic Polymorphism in Plasmodium falciparum Using an Arbitrarily Primed PCR Assay

ABSTRACT. Modifications of the arbitrarily primed polymerase chain reaction assay (i.e. a low annealing temperature and a very slow increase in the temperature during the elongation steps during the amplification cycles) allowed it to be used with the AT-rich Plasmodium falciparum DNA. The analysis of the products by polyacrylamide—urea gels, after silver staining, resulted in high resolution and sensitivity. Eighteen single and six combined pairs of arbitrary primers were tested. Two produced polymorphic patterns complex enough to differentiate between close Colombian isolates in a single assay. This method may be useful in studying the distribution and migration of strains in endemic areas, and for identifying intralaboratory cross-contamination of cultures.     

Salted roads and sodium limitation in a northern forest ant community

1. Road salt is a common, anthropogenic source of NaCl in many temperate ecosystems. Sodium is also an essential and potentially limiting element for inland animal populations. This suggests that Na limitation in inland ecosystems, and hence attraction to Na sources, should increase with distance from salted roads. 2. In a North Temperate forest, we tested the prediction that Na recruitment would increase, as soil [Na] decreased, with distance from a salted two‐lane highway. We presented ants with three concentrations of NaCl and sucrose solution along four pairs of transects ca 1, 10, 100, and 1000 m from the road. 3. Consistent with the Na‐limitation hypothesis, the ratio of NaCl to sucrose use increased with distance from the road from 1:13 vials at 1 m to 1:5 vials at 1 km. Genera characterised by high Na use did not accumulate farther from the road. For the common and widespread Tapinoma sessile (Say), a 10‐fold increase in distance from the road resulted in ants doubling their use of NaCl relative to sucrose. 4. Road salt is a well‐known pollutant, especially of freshwater ecosystems. However, by suppressing plants and potentially promoting consumers, road salt may have more complex effects on terrestrial ecosystems, especially those far inland from oceanic aerosols.     

Effects of river ice on riparian vegetation

1. Many rivers and streams experience pronounced ice dynamics caused by the formation of anchor and frazil ice, leading to flooding and disturbance of riparian and aquatic communities. However, the effects of dynamic ice conditions on riverine biota are little known. 2. We studied the formation of anchor ice in natural streams over 2 years and assessed the effects of anchor ice on riparian vegetation by comparing sites with frequent or abundant and little or no anchor ice formation. We also studied the direct impact of ice on riparian plants by experimentally creating ice in the riparian zone over three winters and by exposing plants of different life forms to ?18 °C cold ice in the laboratory. 3. Riparian species richness per 1‐m² plot was higher at sites affected by anchor ice than at sites where anchor ice was absent or rare, whereas dominance was lower, suggesting that disturbance by ice enhances species richness. Species composition was more homogenous among plots at anchor ice sites. By experimentally creating riparian ice, we corroborated the comparative results, with species richness increasing in ice‐treated plots compared to controls, irrespective of whether the sites showed natural anchor ice. 4. Because of human alterations of running waters, the natural effects of river ice on stream hydrology, geomorphology and ecology are little known. Global warming in northern streams is expected to lead to more dynamic ice conditions, offering new challenges for aquatic organisms and river management. Our results should stimulate new research, contributing to a better understanding of ecosystem function during winter.     

Morphotypes,varieties, or subspecies?: genetic diversity and differentiation of four Saintpaulia (Gesneriaceae) morphotypes from the East Usambara Mountains,Tanzania

Saintpaulia (H. Wendl.) is a forest-dependent, endangered plant genus endemic to Tanzania and Kenya. The taxonomy of Saintpaulia from the Usambara Mountains and adjacent lowlands in north-eastern Tanzania is problematic because of the morphological similarity of the species and the presence of considerable intraspecific variation. Conventional molecular phylogenetic methods have failed to reveal the genetic structure of this Saintpaulia complex. In this study, we assessed the genetic composition of 12 Saintpaulia populations, representing four different morphotypes, from the East Usambara Mountains using inter-simple sequence repeat (ISSR) markers. Relatively high genetic diversities were observed within populations (mean h  = 0.320), indicating their adaptive potential. Little genetic differentiation amongst populations (mean F _st  = 0.063) and the genetic divergence of the rosulate and trailing morphotypes support the hypothesis of ongoing divergent evolution within the East Usambara metapopulation(s) of Saintpaulia .  © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society , 2008, 157 , 347–355.     

The use of unlicensed bone marrow–derived platelet lysate–expanded mesenchymal stromal cells in colitis: a pre-clinical study

Background

Mesenchymal stromal cells (MSCs) are a promising candidate for treatment of inflammatory disorders, but their efficacy in human inflammatory bowel diseases (IBDs) has been inconsistent. Comparing the results from various pre-clinical and clinical IBD studies is also challenging due to a large variation in study designs.

HORSETAILS AND SEED FERNS FROM THE MIDDLE TRIASSIC (ANISIAN) LOCALITY KÜHWIESENKOPF (MONTE PRÀ DELLA VACCA), DOLOMITES, NORTHERN ITALY

Abstract:  Well-preserved floras from the Alpine Early–Middle Triassic are rare, and thus our understanding of the vegetation in this area during this period of time continues to be incomplete. As a result, every new find represents a significant piece of information that deserves thoughtful consideration. Anisian (Middle Triassic) sphenophytes and pteridosperms have recently been recovered from the Kühwiesenkopf locality (Monte Prà della Vacca) in northern Italy. The sphenophytes are represented by stem fragments, strobili and isolated sporangiophore heads of Equisetites , as well as by a few specimens of Neocalamites sp. and Echinostachys sp. The pteridosperms include abundant remains of the peltasperm foliage type Scytophyllum bergeri . A second Scytophyllum species in this flora, S. apoldense , is regarded as conspecific with S. bergeri based on epidermal anatomy; the two morphotypes are interpreted as sun and shade leaves of a single biological species. The seed-bearing disc Peltaspermum bornemannii sp. nov. probably represents the female reproductive structure of S. bergeri . Additional pteridosperm remains include foliage assignable to Sagenopteris sp. and Ptilozamites sp., in both cases perhaps the earliest records of these genera.     

Effects of forest management on the carbon dioxide emissions of wood energy in integrated production of timber and energy biomass

The aim of this work was to study the sensitivity of carbon dioxide (CO₂) emissions from wood energy to different forest management regimes when aiming at an integrated production of timber and energy biomass. For this purpose, the production of timber and energy biomass in Norway spruce [Picea abies (L.) Karst] and Scots pine (Pinus sylvestris L.) stands was simulated using an ecosystem model (SIMA) on sites of varying fertility under different management regimes, including various thinning and fertilization treatments over a fixed simulation period of 80 years. The simulations included timber (sawlogs, pulp), energy biomass (small‐sized stem wood) and/or logging residues (top part of stem, branches and needles) from first thinning, and logging residues and stumps from final felling for energy production. In this context, a life cycle analysis/emission calculation tool was used to assess the CO₂ emissions per unit of energy (kg CO₂ MWh^?1) which was produced based on the use of wood energy. The energy balance (GJ ha^?1) of the supply chain was also calculated. The evaluation of CO₂ emissions and energy balance of the supply chain considered the whole forest bioenergy production chain, representing all operations needed to grow and harvest biomass and transport it to a power plant for energy production. Fertilization and high precommercial stand density clearly increased stem wood production (i.e. sawlogs, pulp and small‐sized stem wood), but also the amount of logging residues, stump wood and roots for energy use. Similarly, the lowest CO₂ emissions per unit of energy were obtained, regardless of tree species and site fertility, when applying extremely or very dense precommercial stand density, as well as fertilization three times during the rotation. For Norway spruce such management also provided a high energy balance (GJ ha^?1). On the other hand, the highest energy balance for Scots pine was obtained concurrently with extremely dense precommercial stands without fertilization on the medium‐fertility site, while on the low‐fertility site fertilization three times during the rotation was needed to attain this balance. Thus, clear differences existed between species and sites. In general, the forest bioenergy supply chain seemed to be effective; i.e. the fossil fuel energy consumption varied between 2.2% and 2.8% of the energy produced based on the forest biomass. To conclude, the primary energy use and CO₂ emissions related to the forest operations, including the production and application of fertilizer, were small in relation to the increased potential of energy biomass.