Direct evidence for biased gene diversity estimates from dominant random amplified polymorphic DNA (RAPD) fingerprints

The relevance of using dominant random amplified polymorphic DNA (RAPD) fingerprints for estimating population differentiation was investigated when typically small population sample sizes were used. Haploid sexual tissues were first used to determine genotypes at RAPD loci for 75 eastern white pines ( Pinus strobus L.) representing five populations. Dominant RAPD fingerprints were then inferred from genotypic data for each individual at each locus, and gene diversity estimates from both sources of data were compared. Genotypic information at RAPD loci indicated little or no differentiation among populations, similar to allozyme loci. However, estimates of population differentiation derived from dominant RAPD fingerprints according to various common methods of analysis were generally inflated, especially when all fragments were considered. Simulations showed that an increase in loci sampling and population sample sizes did not significantly alleviate the biases observed.     

Immunocompetent Infants as a Human Reservoir for Pneumocystis jirovecii: Rapid Screening by Non-Invasive Sampling and Real-Time PCR at the Mitochondria1 Large Subunit rRNA Gene

ABSTRACT. We tested a real-time PCR assay targeting the Pneumocystis jirovecii mitochondria1 large subunit rRNA gene on 240 archival nasopharyngeal aspirates from non-immunosuppressed infants. The sensitivity of this assay appeared close to that of a conventional nested-PCR assay targeting the same locus. Because of its one-step procedure, and its sensitivity and rapidity, the real-time PCR assay is particularly suitable for screening individuals parasitized by P. jirovecii within large populations.     

Ant-fed plants: comparison between three geophytic myrmecophytes

In their association with myrmecophytes (i.e. plants that shelter a limited number of ant species in hollow structures), ants sometimes provide only poor biotic protection for their host plants, but may supply them with nutrients (myrmecotrophy). We studied three geophytic myrmecophytes growing in the understorey of Guianian rain forests. Allomerus ants build spongy-looking galleries rich in detritus and insect debris over the stems of their host plants [ Cordia nodosa Lamark (Boraginaceae) and Hirtella physophora Martius & Zuccharini (Chrysobalanaceae)], while Pheidole minutula Mayr colonies deposit their waste in the leaf pouches of their host plant [ Maieta guianensis Aublet (Melastomataceae)]. This waste is more nitrogen-rich than that found in the Allomerus galleries, themselves containing more nitrogen than the plant leaves. Using stable isotope analysis we noted a significant difference in δ¹⁵N between ant-occupied and unoccupied plants only for Maieta , for which 80% of the host plant nitrogen is derived from Pheidole waste. Experiments on all three plants using a ¹⁵N-supplemented solution of NH₄Cl confirmed these results, with an increase in this isotope noted between control and experimental plants only for Maieta . The internal surfaces of Maieta leaf pouches bear protuberances whose likely role is to absorb nutrients from the Pheidole waste. The alternative hypothesis, that these protuberances play a role in provisioning ants, was rejected after comparing their structure with those of extrafloral nectaries and food bodies in a histological study.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 83 , 433–439.     

Metal cation binding by the hyperthermophilic microorganism,Archaea Methanocaldococcus Jannaschii,and its effects on silicification

Abstract: A series of experiments was conducted to determine the capacity of an archaeal strain, Methanocaldococcus jannaschii, to bind metals and to study the effects of metal binding on the subsequent silicification of the microorganisms. The results showed that M. jannaschii can rapidly bind several metal cations (Fe³⁺, Ca²⁺, Pb²⁺, Zn²⁺, Cu²⁺). Considering the lack of silicification of this strain without metal binding, these experiments demonstrate that Fe(III) ion binding to the cell wall components was of fundamental importance for successful silicification and, especially, for the excellent preservation of the cell wall. This study brings new elements to the understanding of fossilization processes, showing that the positive effect of Fe(III) on silicification, already known for Bacteria, can also apply to Archaea and that this preliminary binding can be decisive for the subsequent fossilization of these organisms. Knowledge of these mechanisms can be helpful for the search and the identification of microfossils in both terrestrial and extraterrestrials rocks, and in particular on Mars.     

Egg dumping by predatory insects

Synovigenic insects resorb oocytes when food is scarce and mature oocytes when food is plentiful. These two antagonistic processes allow an optimal allocation of resources to reproduction and somatic functions. Unlike hymenopteran parasitoids, ladybirds cannot resorb mature oocytes present in the oviducts. Is the energy contained in these oocytes lost or is there a mechanism for recovering it when needed? Females of two species of ladybird beetles Adalia bipunctata (L.) and Adalia decempunctata (L.) that are starved for >24 h lay single infertile eggs, which they immediately eat, and these eggs comprise the mature oocytes in the oviducts at the onset of starvation. This behaviour has some similarities to egg dumping reported in herbivorous insects and is part, in ladybird beetles, of a process to retrieve energy invested in reproduction. Such behaviour may exist in other predatory synovigenic insects species that do not invest in maternal care.     

Molecular Cascades in UV Induced Melanogenesis: A Central Role for Melanotropins?

When human skin is exposed to ultraviolet (UV) light, a highly complex cascade of events ensues that culminates, among other things, in increased skin melanin content. From analyses at the tissue and cellular level, it has been shown that following exposure to UV light there is an increase in the number of active melanocytes in the basal layer of the epidermis, and individual melanocytes are stimulated to produce more melanin. In addition, the rate of transfer of melanosomes from melanocytes to keratinocytes is apparently increased, although the role of UV light in this process remains to be demonstrated. Recent biochemical evidence is reviewed on factors that regulate these processes. A plausible explanation for the effects of UV on pigmentation is that there are mechanisms in the skin for the orderly, regulated reception of UV signals that are then transduced to initiate the cascade. The signals involve both melanocytes and keratinocytes, and avail-able evidence supports a model in which melanotropins and their receptors play a central role in the process.     

Locomotion in Nebalia bipes: a possible model for Palaeozoic phyllocarid crustaceans

The morphofunctional aspects of locomotion in Recent phyllocarid crustaceans are presented, based on combined video observations of living specimens of the cosmopolitan nektobenthic Nebalia (Leptostraca, Nebaliidae) and scanning electron microscopy of fixed material. N. bipes is infaunal by day, showing a preference for organic-rich black muds and dim light conditions. Under natural conditions, emergence from sediment and nocturnal swimming activities are controlled by a circadian rhythm. The 1st and 2nd antennae perform the major role in digging. The carapace rostral plate acts as a ram diverting particles and preventing inputs of sediment into the carapace. Superficial burrowing may provide camouflaged shelter against predation. Swimming is accomplished by the combined action of the first four pairs of pleopods (backward metachronal flexion during the power stroke) and the well-articulated abdominal shaft (downward flap). Plumose setae present on both the pleopods and furcal rami (governed by low Reynolds numbers) behave like paddles maximizing the resistance to the water. Clusters of cuticular microscales (3-5 μm) and microdenticles are present on the external surface of the carapace and the trunk segments, respectively. Both show a uniform directional arrangement suggesting functional interpretations in relation to locomotion (e.g., to prevent back slippage during digging, to reduce turbulence in the flow layer close to the body, and/or to serve as mechanoreceptors for the detection of variation in water flow). Key features of functional importance in the locomotion of living leptostracans (natatory pleopods, a highly flexible abdomen, setulate or paddle-like furcal rami) are also recognized in Palaeozoic archaeostracan phyllocarids, suggesting that swimming was accomplished by the same pleopodal movements as described for N. bipes. Comparisons with Recent analogues (Nebaliopsis) suggest that phyllocarids with a free swimming life-style existed among the lower Palaeozoic archaeostracans (e.g., Caryocaris; Ordovician). Asymmetrical cuticular ornament in some archaeostracans indicates burrowing habits. Some Palaeozoic phyllocarids may have been occasional (possibly diurnal) mud dwellers comparable to modern nebaliids.     

The Cambrian origin of the circulatory system of crustaceans

The carapace of Recent crustaceans such as myodocope ostracodes and phyllocarids is pervaded with well-developed anastomosing sinuses conveying hemolymph from the metabolizing organs to the dorsal heart. The inner lamella cuticle, which separates the sinuses from seawater, is thin enough to allow gaseous diffusion (e.g., O₂ uptake) over its surface. Comparable radiating and/or anastomosing features, of possible vascular origin, are herein recognized in several possible Crustacea from the Cambrian: cambriid, svealutiid, hipponicharionid and beyrichonid Bradoriida and in Carnarvonia from the middle Cambrian Burgess Shale. The vascular network is basically the same in these groups, consisting of sinuses radiating from supposed adductorial areas or from inferred areas of dorsal attachment of the body. The integumental (carapace sinuses) and branchial (gills) systems of respiration in crustaceans and crustacean-like animals were probably already differentiated by the middle Cambrian. The oldest record of probable integumental circulation is in the bradoriid Petrianna from the early Cambrian of Greenland. Similar circulatory systems may be represented by radiating ridges on the cephalon of other Cambrian arthropod groups such as the arachnomorphs ( Burgessia ) and trilobites ( Naraioa ) and may also be manifest in the carapaces of Ordovician-Devonian leperditicope ostracodes. Organs on the thoracopods of Cambrian supposed crustaceans, such as Canadaspis , resemble the foliaceous thoracic gills of Recent nebaliid phyllocarids and therefore may have served the same (respiratory) function.     

The influence of elevated CO2 on species phenology, growth and reproduction in a Mediterranean old-field community

We studied the effects on the phenology, growth and reproduction of 19 Mediterranean species, of elevating the atmospheric CO₂ concentration ([CO₂]) to twice-ambient. Intact monoliths were taken from an old-field and put, during a six month growing season, into growth chambers in which external climatic conditions were mimicked and [CO₂] was regulated. Fruit set time was significantly changed in six species under elevated [CO₂] and leaf and branch senescence accelerated in most species. Grasses had fewer leaves and legumes were more branched at peak production under elevated [CO₂] than under ambient. Plant seed number was not significantly changed under elevated [CO₂], whereas the reproductive effort of grasses was significantly depressed. Reproductive and vegetative characteristics showed related responses to [CO₂], as species with enhanced biomass had a hastened fruit set time, a higher number of fruits per plant and a higher reproductive biomass under elevated [CO₂] than under ambient conditions, while species with depressed biomass had a delayed fruit set time, a lower number of fruits per plant and a lower reproductive biomass. Our results also show a high interspecific variability in [CO₂] response, but some trends emerged at the family level: the production of vegetative and reproductive modules were depressed in grasses and slightly stimulated in legumes.