Comparative diurnal and nocturnal foraging behaviour and energy intake of premigratory Grey Plovers Pluvialis squatarola and Whimbrels Numenius phaeopus in South Africa

Estimates of the energy budgets of nonbreeding waders (Charadrii) have frequently been hampered by ignorance of the birds' nocturnal activities. During the premigratory period (March), Grey Plovers Pluvialis squatarola and Whimbrels Numenius phaeopus at the Zwartkops estuary, South Africa, foraged throughout the nocturnal as well as the diurnal low-tide period. Although both species continued to forage visually at night, they exhibited behavioural changes to compensate for the reduced visibility. Both species foraged more slowly at night, taking fewer steps per minute, and Grey Plovers paused for longer to search for prey. Prey items were sighted from shorter distances at night than during the day. Energy intake rates, however, did not differ significantly by day and night for either species, and both achieved over 40% of their daily low-tide period intake at night. The energy intake rates and total daily intake of Grey Plovers, which fed exclusively on the study area, exceeded allometrically predicted values.     

Determining Observer Reliability in Counts of River Otter Tracks

ABSTRACT In many research projects, reliability of collected data is dependent on reliability of field observers. However, it is uncommon for observer reliability to be either measured or reported in wildlife research. We tested whether observer skill affected outcomes of a northern river otter (Lontra canadensis) track survey conducted by the Texas Parks and Wildlife Department. Observers recorded presence of tracks at bridge sites (n = 250) throughout a 27-county region in east Texas, USA. Logistic regression indicated that observers were significantly associated with frequency of reported otter tracks. Because observers were not assigned to bridges at random, we tested and found associations between the bridges surveyed by each observer (SURVEY ROUTE) and habitat variables (WATERSHED, VEGETATION-TYPE, WATER-TYPE, BRIDGE-AREA) that may have influenced otter presence and probability of detection. A standardized tracker evaluation procedure indicated that experienced observers (n = 7) misidentified 37% of otter tracks. Additionally, 26% of tracks from species determined to be “otter-like” were misidentified as otter tracks. We recommend that observer skill in identification of animal tracks and other indirect signs be measured to detect and reduce observer errors in wildlife monitoring.     

Comprehensive paternity assignment: genotype,spatial location and social status in song sparrows,Melospiza Melodia

Comprehensive, accurate paternity assignment is critical to answering numerous questions in evolutionary ecology. Yet, most studies of species with extra‐pair paternity (EPP) fail to assign sires to all offspring. Common limitations include incomplete and biased sampling of offspring and males, particularly with respect to male location and social status, potentially biasing estimated patterns of paternity. Studies that achieve comprehensive sampling and paternity assignment are therefore required. Accordingly, we genotyped virtually all males and >99% of 6‐day‐old offspring over 16 years in a song sparrow (Melospiza melodia) population and used three complementary statistical methodologies to attempt complete paternity assignment for all 2207 offspring. Assignments were highly consistent across maximum likelihood methods that used solely genotype data, and heuristic and integrated Bayesian analyses that included data describing individual locations. Sires were assigned to >99% of all genotyped offspring with ≥95% confidence, revealing an EPP rate of c. 28%. Extra‐pair sires primarily occupied territories neighbouring their extra‐pair offspring; spatial location was therefore highly informative for paternity assignment. EPP was biased towards paired territorial males, although unpaired territorial and floater males sired c. 13% of extra‐pair offspring. Failing to sample and include unpaired males as candidate sires would therefore substantially reduce assignment rates. These analyses demonstrate the integration of genetic and ecological information to achieve comprehensive paternity assignment and direct biological insight, illustrate the potential biases that common forms of incomplete sampling could have on estimated patterns of EPP, and provide an essential basis for understanding the evolutionary causes and consequences of EPP.     

Genetic structure of a recent climate change‐driven range extension

The life‐history strategies of some species make them strong candidates for rapid exploitation of novel habitat under new climate regimes. Some early‐responding species may be considered invasive, and negatively impact on ‘naïve’ ecosystems. The barrens‐forming sea urchin Centrostephanus rodgersii is one such species, having a high dispersal capability and a high‐latitude range margin limited only by a developmental temperature threshold. Within this species’ range in eastern Australian waters, sea temperatures have increased at greater than double the global average rate. The coinciding poleward range extension of C. rodgersii has caused major ecological changes, threatening reef biodiversity and fisheries productivity. We investigated microsatellite diversity and population structure associated with range expansion by this species. Generalized linear model analyses revealed no reduction in genetic diversity in the newly colonized region. A ‘seascape genetics’ analysis of genetic distances found no spatial genetic structure associated with the range extension. The distinctive genetic characteristic of the extension zone populations was reduced population‐specific F_ST, consistent with very rapid population expansion. Demographic and genetic simulations support our inference of high connectivity between pre‐ and post‐extension zones. Thus, the range shift appears to be a poleward extension of the highly‐connected rangewide population of C. rodgersii. This is consistent with advection of larvae by the intensified warm water East Australian current, which has also increased Tasmanian Sea temperatures above the species’ lower developmental threshold. Thus, ocean circulation changes have improved the climatic suitability of novel habitat for C. rodgersii and provided the supply of recruits necessary for colonization.     

The impact of biomass crop cultivation on temperate biodiversity

The urgency for mitigation actions in response to climate change has stimulated policy makers to encourage the rapid expansion of bioenergy, resulting in major land‐use changes over short timescales. Despite the potential impacts on biodiversity and the environment, scientific concerns about large‐scale bioenergy production have only recently been given adequate attention. Environmental standards or legislative provisions in the majority of countries are still lagging behind the rapid development of energy crops. Ranging from the field to the regional scale, this review (i) summarizes the current knowledge about the impact of biomass crops on biodiversity in temperate regions, (ii) identifies knowledge gaps and (iii) drafts guidelines for a sustainable biomass crop production with respect to biodiversity conservation. The majority of studies report positive effects on biodiversity at the field scale but impacts strongly depend on the management, age, size and heterogeneity of the biomass plantations. At the regional scale, significant uncertainties exist and there is a major concern that extensive commercial production could have negative effects on biodiversity, in particular in areas of high nature‐conservation value. However, integration of biomass crops into agricultural landscapes could stimulate rural economy, thus counteracting negative impacts of farm abandonment or supporting restoration of degraded land, resulting in improved biodiversity values. Given the extent of landconversion necessary to reach the bioenergy targets, the spatial layout and distribution of biomass plantations will determine impacts. To ensure sustainable biomass crop production, biodiversity would therefore have to become an essential part of risk assessment measures in all those countries which have not yet committed to making it an obligatory part of strategic landscape planning. Integrated environmental and economic research is necessary to formulate standards that help support long‐term economic and ecological sustainability of biomass production and avoid costly mistakes in our attempts to mitigate climate change.     

Incorporating historical museum specimens into molecular systematic and conservation genetics research

We successfully amplified mitochondrial DNA (mtDNA) and microsatellites from historical museum specimens of lizards and frogs dating from 1894 through to 1998. Ancient DNA techniques were used to extract whole genomic DNA from a number of different tissues, including liver, leg muscle and toe clips, followed by standard polymerase chain reaction techniques for amplification. We had a 78% success rate amplifying mtDNA from 14 museum specimens and a 57% success rate amplifying microsatellite markers for seven museum specimens. Our study demonstrates the feasibility of incorporating historical museum specimens into molecular systematic and conservation genetic studies.