Targeting secret handshakes of biological processes for novel drug development

In multicellular organisms, several biological processes control the rise and fall of life. Different cell types communicate and co-operate in response to different stimulus through cell to cell signaling and regulate biologic processes in the cell/organism. Signaling in multicellular organism has to be made very secretly so that only the target cell responds to the signal. Of all the biomolecules, nature chose mainly proteins for secret delivery of information both inside and outside the cell. During cell signaling, proteins physically interact and shake hands for transfer of secret information by a phenomenon called as protein–protein interactions (PPIs). In both, extra and intracellular signaling processes PPIs play a crucial role. PPIs involved in cellular signaling are the primary cause for cell proliferation, differentiation, movement, metabolism, death and various other biological processes not mentioned here. These secret handshakes are very specific for specific functions. Any alterations/malfunctions in particular PPIs results in diseased condition. An overview of signaling pathways and importance of PPIs in cellular function and possibilities of targeting PPIs for novel drug development are discussed in this review.     

Unraveling the journey of cancer stem cells from origin to metastasis

Cancer biology research over recent decades has given ample evidence for the existence of self-renewing and drug-resistant populations within heterogeneous tumors, widely recognized as cancer stem cells (CSCs). However, a lack of clear understanding about the origin, existence, maintenance, and metastatic roles of CSCs limit efforts towards the development of CSC-targeted therapy. In this review, we describe novel avenues of current CSC biology. In addition to cell fusion and horizontal gene transfer, CSCs are originated by mutations in somatic or differentiated cancer cells, resulting in de-differentiation and reprogramming. Recent studies also provided evidence for the existence of distinct or heterogeneous CSC populations within a single heterogeneous tumor. Our analysis of the literature also opens the doors for a novel hypothesis that CSC populations with specific phenotypes, metabolic profiles, and clonogenic potential metastasize to specific organs.     

Secretion of an epidermal growth factor-like growth factor by epidermal growth factor-independent rat mammary carcinoma cells.

Rat mammary carcinoma (RMC) cells derived from serially transplantable mammary tumors are independent of epidermal growth factor (EGF) for long-term growth in serum-free medium. This phenotype is in contrast to that of normal mammary epithelial cells or cells derived from nontransplantable tumors that express an absolute requirement for EGF for growth in culture. The results of the experiments reported here indicate that EGF-independent RMC cells secrete a growth factor with potent EGF-like mitogenic activity. Conditioned media obtained from these cells can substitute for EGF for the growth of the EGF-dependent cell line MCF-10. This growth factor is neither EGF nor transforming growth factor alpha and does not compete with 125I-EGF for binding to EGF receptors. Phosphotyrosine Western blot analysis of lysates obtained from EGF-independent RMC cells revealed the presence of a 190 kilodalton (kDa) protein that was distinct from the EGF receptor. Similarly, growth of MCF-10 cells to confluence in serum-free medium supplemented with conditioned medium growth factor in place of EGF resulted in the disappearance of the EGF receptor band and appearance of the 190 kDa band in phosphotyrosine Western blots. The 190 kDa tyrosine-phosphorylated protein detected in cells stimulated by the conditioned medium factor is unlikely to be the c-erbB-2 protein, as indicated by negative results in immunoprecipitation experiments and in vitro kinase assays. In summary, EGF-independent RMC cells secrete a factor with potent EGF-like mitogenic activity. This suggests that an autocrine loop involving this growth factor mediates EGF independence in these cells.     

Separation of BSA through FAU-type zeolite ceramic composite membrane formed on tubular ceramic support: Optimization of process parameters by hybrid response surface methodology and biobjective genetic algorithm

In this study, Faujasite (FAU) zeolite was coated on low-cost tubular ceramic support as a separating layer through hydrothermal route. The mixture of silicate and aluminate solutions was used to create a zeolitic separation layer on the support. The prepared zeolite ceramic composite membrane was characterized using X-ray powder diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), particle size distribution (PSD), field emission scanning electron microscopy (FESEM), and zeta potential measurements. The porosity of ceramic support (53%) was reduced by the deposition of FAU (43%) zeolite layer. The pore size and water permeability of the membrane were evaluated as 0.179?µm and 1.62?×?10^?7?m³/m²?s?kPa, respectively, which are lower than that of the support (pore size of 0.309?µm and water permeability of 5.93?×?10^?7?m³/m²?s?kPa). The permeate flux and rejection potential of the prepared membrane were evaluated by microfiltration of bovine serum albumin (BSA). To study the influences of three independent variables such as operating pressure (68.94–275.79?kPa), concentration of BSA (100–500?ppm), and solution pH (2–4) on permeate flux and percentage of rejection, the response surface methodology (RSM) was used. The predicted models for permeate flux and rejection were further subjected to biobjective genetic algorithm (GA). The hybrid RSM-GA approach resulted in a maximum permeate flux of 2.66?×?10^?5?m³/m²?s and BSA rejection of 88.02%, at which the optimum conditions were attained as 100?ppm BSA concentration, 2 pH solution, and 275.79?kPa applied pressure. In addition, the separation efficiency was compared with other membranes applied for BSA separation to know the potential of the fabricated FAU zeolite ceramic composite membrane.     

Indices of calcium availability and degree of dispersion in soils

Summary A comparison of the various indices of calcium availability and degree of dispersion of the soils showed that Mehlich's 1.0 me H method may be a good index of calcium availability for a particular group of soils, but the modified calcium-release value of the exchangeable phase was a superior index when a more diversified group of soils was involved. The type of the clay, cation-exchange capacity, organic matter content,etc. were the most likely factors to influence the choice of the method.The indices based on exchangeable ions were superior to those based on ion concentration in solution for predicting the dispersability of the soil.     

Dynamics of phosphodiesterase-induced cAMP dissociation from protein kinase A: Capturing transient ternary complexes by HDXMS

cAMP signaling is a fundamental cellular process necessary for mediating responses to hormonal stimuli. In contrast to cAMP-dependent activation of protein kinase A (PKA), an important cellular target, far less is known on termination in cAMP signaling, specifically how phosphodiesterases (PDEs) facilitate dissociation and hydrolysis of bound cAMP. In this study, we have probed the dynamics of a ternary complex of PKA and a PDE–RegA with an excess of a PDE-nonhydrolyzable cAMP analog, Sp-cAMPS by amide hydrogen/deuterium exchange mass spectrometry (HDXMS). Our results highlight how HDXMS can be used to monitor reactions together with mapping conformational dynamics of transient signaling complexes. Our results confirm a two-state model for active RegA-mediated dissociation of bound cAMP. Further, our results reveal that Sp-cAMPS and RegA mediate mutually exclusive interactions with the same region of PKA and at specific concentrations of Sp-cAMPS, RegA is capable of blocking Sp-cAMPS reassociation to PKA. This provides a molecular basis for how PDEs modulate levels of intracellular cAMP so that PKA is better suited to responding to fluxes rather than constant levels of cAMP. This study underscores how HDXMS can be a powerful tool for monitoring reactions together with mapping conformational dynamics in signaling proteins. This article is part of a Special Issue entitled: Mass spectrometry in structural biology.     

UV-B Induced Alterations in Composition of Thylakoid Membrane and Amino Acids in Leaves of Rhizophora Apiculata Blume

Seedlings of Rhizophora apiculata were exposed to UV-B radiation at four doses equivalent to 10, 20, 30, and 40 % ozone depletion. The seedlings irradiated with high doses of UV-B had characteristic decline in contents of specific proteins with molecular masses of 33, 23, and 17 kDa. On the contrary, proteins of 55, 33, 25, 23, and 17 kDa were accumulated in the seedlings exposed to low doses of UV-B. The UV-B, in general, enhanced formation of saturated fatty acids and reduced unsaturated fatty acids, to a maximum extent of 88 and 26 %, respectively. The low dose of UV-B increased content of oleic acid by 9 %, and the high dose reduced it by 34 %. The high dose of UV-B enhanced the lipid peroxidation by 48 %, whereas the low dose of UV-B did not show any significant effect. The contents of amino acids such as aspartate, glutamate, asparagine, serine, glutamine, threonine, and histidine were increased in low UV-B doses by 53, 86, 142, 72, 3, 119, and 32 %, respectively; while in high doses they were reduced significantly.     

Physiological responses of mangrove seedling to triacontanol

In viviparous hypocotyls ofRhizophora apiculata Blume the triacontanol treatment enhanced the growth of root and shoot (number of primary and secondary roots, length of roots, shoot height and biomass) protein and energy contents of leaves and roots,in vivo nitrate reductase activity, contents of chlorophylls and carotenoids in leaves as well as the amount of chlorophylls present in photosystems 1 and 2 and in the light harvesting complex of chloroplasts. These promotory effects were recorded at 40 and 80 mg m^-3 triacontanol, but they decreased with increasing growth regulator concentration. Communicated by Z. ŠESTáK     

Use of transferred nuclear overhauser effects to determine the conformation of 1-(3,4-dichlorophenyl)-2-aminopropane when bound to the active site of phenylethanolamine N-methyltransferace (PNMT)

Transferred two dimensional nuclear Overhauser effect spectroscopy (transferred NOESY) was used to show that the side chain of 1-(3,4-dichlorophenyl)-2-aminopropane (1) exists when bound at the active site of PNMT in an extended conformation (τ₂=167 – 180°) with the aromatic ring rotated out of the plane of the ethylamine side chain (τ₁ = 29 – 45°).