Behavioral patterns of two fiddler crab species Uca rapax and Uca tangeri in a seminatural mangrove system

Zoos increasingly transform their exhibitions from traditional one‐species enclosures to more natural exhibits, that is, environments that capture part of an ecosystem including a selection of animals and plants that occur there. Thus, enhancing the experience of its human visitors while also allowing its residents to possibly show more natural behavior. In 2017 Royal Burger's Zoo (Arnhem, The Netherlands) created and opened a mangrove‐like environment containing fiddler crabs. Fiddler crabs display a broad range of behaviors, and this research examines which wild‐type behavior and behavioral patterns can be observed on a seminatural mudflat. The behavior shown by Uca rapax and Uca tangeri on the mudflat was counted each hour between 07:00 and 17:00. An asymmetric tidal regime was present in the enclosure including two high water periods. Various known fiddler crab behaviors, including waving and combat, were observed but no copulation. A clear pattern in exposed crabs on the mudflat was found, with low numbers visible in the early morning and the highest numbers present in the early afternoon, while number of visitors did not have a significant effect on this pattern. Interestingly, the highest abundances were not observed around the ebbing tide (07:00–09:00), as observed in the wild, but somewhat later, possibly due to the asymmetric tidal scheme or the interaction of tidal and daily rhythms. This study shows that in captivity, fiddler crabs indeed show a range of natural behaviors which is linked to the tidal and possibly daily rhythm as well.     

Elevated α-Linolenic Acid Content in Extra-plastidial Membranes of Tomato Accelerates Wound-Induced Jasmonate Generation and Improves Tolerance to the Herbivorous Insects Heliothis peltigera and Spodoptera littoralis

Journal of Plant Growth Regulation - In tomato, desaturation of linoleic acid (18:2) to α-linolenic acid (18:3) is mediated in the plastidial membranes by the ω-3 fatty acid desaturases 7...     

Double-antigen sandwich ELISA based on chimeric antigens for detection of antibodies to Trypanosoma cruzi in human sera

BackgroundEnzyme-linked immunosorbent assays (ELISA) are generally the chosen test for Chagas disease (CD) diagnosis; however, its performance depends on the antigen preparation adsorbed to the solid phase, which may lead to false-positive results and cross-reactions. The use of chimeric recombinant antigens can overcome this limitation. Four chimeric antigens from Trypanosoma cruzi (IBMP-8.1, IBMP-8.2, IBMP-8.3 and IBMP-8.4) were developed and evaluated in phase I, II and III studies using indirect ELISA as diagnostic platform. However, peroxidase-labeled secondary anti-human IgG antibody, which is employed in indirect ELISAs, limits its use for the detection of species-specific and class-specific antibodies. To overcome this limitation, peroxidase-labeled antigens can be utilized, diagnosing both acute or chronic infection, in a species and immunoglobulin class-independent manner, through the use of a double-antigen sandwich ELISA (DAgS-ELISA). We aimed to evaluate and validate the diagnostic performance of the chimeric antigens IBMP-8.1, IBMP-8.2, IBMP-8.3 and IBMP-8.4 in the DAgS-ELISA platform.Methodology/Principal findingsDAgS-ELISA was optimized by checkerboard titration. In phase I study, 207 positive and 205 negative samples were evaluated. Cross-reactivity to other infections was also assessed using 68 samples. The selected conditions for the tests utilized 25 ng of antigen per well and the conjugate diluted at 1:2,000 for all molecules. In the phase I study, the areas under the curve of IBMP-8.1, IBMP-8.2, IBMP-8.3 and IBMP-8.4 were 98.7%, 99.5%, 98.6% and 98.8%, respectively. Among the positive samples, IBMP-8.1 antigen classified 53 (25.6%) as false negative, IBMP-8.2, 27 (13%), IBMP-8.3, 24 (11.6%) and IBMP-8.4, 43 (20.8%), giving sensitivities of 74.4%, 87%, 88.4% and 79.2%, respectively. The only antigen that did not reach 100% specificity was IBMP-8.3, with 96.6%. IBMP-8.3 was also the only molecule to show cross-reactivity with HTLV.Conclusions/SignificanceDAgS-ELISA is a promising tool for immunodiagnosis, and despite the high AUC values, the performance of this assay was different from the values obtained by our group when using these antigens in the indirect ELISA, for this reason, improvements are being considered to increase the sensitivity of the DAgS-ELISA.     

Flight potential and oxygen uptake during early dormancy in Coccinella septempunctata

Two flight parameters (take-off and duration) and respiration level were measured, in two years in summer and early autumn, in dormant Coccinella septempunctata L. (Coleoptera: Coccinellidae) collected while hidden in grass tussocks in hibernation sites (HID) and in beetles collected on plants (PLA). The duration of tethered flight of HID beetles measured in the laboratory in late August and September 1995 (range of geometric means 190–440 s) was slightly longer than the flight of PLA beetles (80–310 s), both being much longer than trivial flight recorded in beetles foraging for prey during the breeding season (35 s). In general, the flight performance had a tendency to increase in September and to decrease in October.The oxygen consumption in HID beetles increased throughout September 1994 from 430 to 780 l g^–1 h^–1 and throughout October 1995 from 710 to 1060 l g^–1 h^–1. This increase is ascribed to a concomitant decrease in diapause intensity. A similar increase was observed also in PLA beetles in 1994 and oxygen consumption was always higher than in HID beetles, most probably due to feeding and digestion in PLA beetles.Laboratory feeding of HID beetles on aphids induced maturation of ovaries and increased oxygen uptake (from 680 to 1110 l g^–1 h^–1). Feeding on honey and pollen left their oxygen uptake unchanged. Effect of feeding on the flight parameters was mostly not significant. In agreement with its less suitable body shape and usually less distant dormancy sites, C. septempunctata was found a less apt flier than long-distance migrating coccinellid species.     

Contributo alla conoscenza dell'ecologia delle biocenosi sulle cascade travertinose nella regione Carstica Jugoslava

Riassunto Il nostro lavoro di molti anni sulle cascade travertinose dei fiumi carstici jugoslavi era diretto verso le esplorazioni delle condizioni di vita su questi specifici biotopi. A causa di questa specificità loro erano potuti popolati solo da determinati specie di piante e di animali, i queli sono adattati su queste condizioni speciali. Esse creano le associazioni, ai queli fa la base la vigorosa vegetazione di muschi e di alghe, e un po'di meno anche di altri piante. Questa vegetazione e accompagnata da numerosi rappresentanti dai diversi gruppi di animali, come queli di Turbellaria, Gastropoda, Oligochaeta, Hirudinea, Amphipoda, Insecta ed a.Dai fattori ecologici erano esplorati le condizioni di vita fisicochimiche e biologiche. In estate la temperatura dell'aqua era sempre oltre la temperatura-limite di deposizione (oltre 14° C), e durante l'inverno generalmente erano le condizioni inconvenienti per i processi di deposizione.Nella parte superficiale delle cascade abiamo constatato due specie di abitazione in relazione della luce. Forte illuminate cascade erano popolate dalle associazioni della luce, ed a causa di meno calcificata vegetazione erano molto più. ricche di animali. Meno illuminate cascade avevano più favorevoli condizioni per il sviluppo della vegetazione travertinosa, la quale era molto calcificata, the cosa non porgeva favorevoli condizioni per il sviluppo del mondo animale.Abiamo constatato the la più favorevole velocità dell'aqua per lo sviluppo dei organismi, i quali popolano i posti delle cascade travertinose, è tra 0,5 e l,5 m/sec., sebbene sui singoli abitazioni la velocita dell'aqua era fra 0,5–3,5 m/sec.A causa di una favorevole alcalità, la quale nelle aque esplorate ammonta tra 2,8 e 5,2, i processi di deposizione sono molto attivi. E costattato un graduale abassamento dell'alcalità in direzione scendente del flume, the cosa si mette in relazione colla perdita del carbonato durante il processo di deposizione.La quantità del ossigeno ammontava da 3,5–9 ccm/l. e perciò generalmente tutte queste aque si possono considerare come poliossitipiche.Per le biocenosi delle cascade travertinose e caratteristica una grande dinamica nel Toro sviluppo. Le più primitive forme delle associazioni sono composte principalmente dai idrofiti. Con un avanzato sviluppo delle formazioni travertinose appariscono nuove stazioni con nuove associazioni. Il climax presenta la vegetazione fanerogama, la quala crew stazioni ombreggiate, dove si sviluppa speciale vegetazione travertinosa dell' ombra. Questi cambiamenti di vegetazione vengono accompagnati da numerose specie di animali dei gruppi Amphipoda, Ephemerida, Trichoptera, Plecoptera, Coleoptera ed a.In fine sono dimostrate le principali caratteristiche di vita in relazione colle condizioni fisico-chimiche e biologiche.

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Summary For a number of years, our work on travertine cascades of Yugoslav Karstic rivers has been directed towards the study of living conditions in these specific biotypes. Owing to their specificity, they could have been inhabited only by certain plant and animal species which have been adapted to these specific conditions. Their communities have been created on a rich moss and seaweed vegetation basis and, to a somewhat smaller extent, also on that of other plants. This vegetation is accompanied by numerous representatives of various animal groups such as: turbellaria, gastropods, oligochaeta, hirudinoids, amphipods, insects et al.As far as ecologic factors are concerned, physical, chemical and biological living conditions have been studied. In summer, water temperature is always above the deposition boundary (above 14°C), while in winter, conditions are generally unfavourable for deposition processes.In connection with light, two habitats were observed on the surface parts of the cascades. The strongly lighted cascades were inhabited by light communities which were considerably richer in animal population, owing to poorly calcified vegetation. As to the development of travertine vegetation, poorly lighted cascades which had been amply calcified, were in a much more favourable position and thus provided unfavourable conditions for the development of animal life.The water speed most favourable for the development of organisms inhabiting travertine cascades has been found to lie between 0.5 and 1.5 meters per second, although in individual habitats water speed amounted to between 0.5 and 3.5 meters per second.Owing to favourable alkalinity, amounting, in the waters investigated, to between 2.8 and 5.2, depositing processes have been very intense. The gradual lowering of alkalinity in the downstream course of rivers, which is brought into connection with the losing of carbonates during the deposition process, has also been established.As the quantity of oxygen amounted to between 3.5–9 ccm/l, these waters can be considered to be polyoxitypical.The biocenosis on travertine cascades are characterized by their very dynamic development. The most primitive forms of communities are mainly composed of hydrophytes. The further development of travertine forms brings about new habitats with new communities. The climax is represented by phanerogamic vegetation, creating rocky habitats where special travertine shade vegetation develops. These changes in vegetation have been accompanied by numerous animal species of the afore-mentioned groups.Finaly, the main characteristics of life in terms of physical, chemical and biological conditions have been presented.

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Zusammenfassung Die mehrjärige Arbeit der Autoren auf den Kalktuffbildenden Wasserfällen der jugoslawischen Karstgewässer war den Erforschungen der Lebensbedingungen auf diesen spezifischen Biotopen gewidmet. Wegen ihrer Eigentümlichkeit konnten die Kalktuffwasserfälle nur von bestimmten Pflanzen- und Tierarten besiedelt werden, die an these besonderen Bedingungen angepasst sind. Sie bilden Gemeinschaften auf eine üppige Moos- und Algenvegetation und etwas weniger auch auf anderen Pflanzen. Diese Vegetation wird von zahlreichen Vertretern verschiedener Tiergruppen begleitet, wie Turbellaria, Gastropoda, Oligochaeta, Hirudinea, Amphipoda, Insecta u.a.Von ökologischen Faktoren wurden die physikalisch-chemischen und biologischen Bedingungen untersucht. Im Sommer war die Wassertemperatuur immer über der Grenztemperatur der Ablagerung (über 14°C), während die Ablagerungsbedingungen im Winter im allgemeinen ungünstig waren.In den oberflächenlichen Teilen der Wässer\:falle wurden, im Verhältnis zu dem Licht, zwei Arten von Standorten festgestellt. Die stark belichteten Wasserfälle sind von Lichtgerneinschaften besiedelt, die wegen der weniger kalzifizierten Vegetation viel mehr Tiere enthalten. Weniger belichtete Wasserfälle zeigen günstigere Bedingungen für eine Entwicklung der Kalktuffvegetation. Diese Vegetation wird sehr kalzifiziert und ist für der Entwicklung der Tierwelt ungünstig.Es wurde festgestellt, dass die günstige Wassergeschwindigkeit für die Entwicklung von Organismen, die die Standorte der Kalktuffwasserfälle besiedeln, zwischen 0,5 and 1,5 m-Sek ist, wiewohl die Wassergeschwindigkeit an einzelnen Standorten zwischen 0,5 and 3,5 m-Sek betrug.Wegen der günstigen Alkalität (2,8–5,2) sind die Ablagerungsvorgänge sehr aktiv. Flussabwärts wurde ein allmählicher Fall der Alkalitätwerte festgestellt, was auf den Verlust des Karbonates während der Ablagerungsvorgänge zurückgeführt wird.Die Sauerstoffmenge beträgt zwischen 3,5–9 ccm/l; im allgemeinen können wir deshalb all these Gewässer als polyoxytypisch betrachten.Für die Gemeinschaften der Kalktuffwasserfälle ist eine grosse Dynamik in ihrer Entwicklung charakteristisch. Die primitivsten Formen der Lebensgemeinschaften sind hauptsächlich aus Hydrophyten zusammengesetzt. Mit der weiteren Entwicklung der Kalktufformen erscheinen neue Standorte mit neuen Gemeinschaften. Das Klimax stellt die Vegetation der höheren Pflanzen tar, die Schattenstandorte macht, wo sich eine besondere Schattenkalktuf-vegetation entwickelt. Diese Vegetationsänderungen werden von zahlreichen Tierarten der genanten Gruppen begleitet.Zum Schluss wird die Hauptcharakteristik des Lebens in Bezug auf die physikalisch-chemischen und biologischen Bedingungen dargestellt.

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Botaniki institut Univerziteta Zagreb

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Bioloki institut Univerziteta Zagreb     

Physiologo-biochemical properties of a strain of Beijerinckia mobilis 1phi Phn+--a degrader of polycyclic aromatic hydrocarbons

Beijerinckia mobilis 1f capable of degrading polycyclic aromatic hydrocarbons (PAHs) was isolated from a soil contaminated with creosote. Strain 1f could utilize phenanthrene and naphthalene as the sole sources of carbon. The mean rate of phenanthrene degradation during culture growth was 7-8 micrograms/(ml h). After cultivation under nonselective conditions, strain 1f retained its ability to degrade phenanthrene. Cometabolism considerably widened the range of PAHs that could be transformed by strain 1f. The strain was able to grow in a mineral medium with creosote as the sole source of carbon. After 30 days of cultivation in this medium, the total concentration of PAHs decreased from 665.5 mg/l to 170 mg/l.     

Use of blood outgrowth endothelial cells as virus-producing vectors for gene delivery to tumors

Cell-based delivery of therapeutic viruses has potential advantages over systemic viral administration, including attenuated neutralization and improved viral targeting. One of the exciting new areas of investigation is the potential ability of endothelial-lineage cells to deliver genes to the areas of neovascularization. In the present study, we compared two types of endothelial-lineage cells [outgrowth endothelial cells (OECs) and culture-modified mononuclear cells (CMMCs), also known as "endothelial progenitor cells"] for their ability to be infected with adenovirus and to home to the areas of neovascularization. Both cell types were isolated from peripheral blood of healthy human donors and expanded in culture. We demonstrate that OECs are more infectable and home better to tumors expressing VEGF on systemic administration. Furthermore, we used an adenoviral/retroviral chimeric system to convert OECs to retrovirus-producing cells. When injected systemically into tumor-bearing mice, OECs retain their ability to produce retrovirus and infect surrounding tumor cells. Our data demonstrate that OECs could be efficient carriers for viral delivery to areas of tumor neovascularization.     

Early-weaned sows: altrenogest therapy, estrus, ovulation, and reproductive performance

Early weaning is a technique used to increase swine health status, and may cause consequences in reproductive performance of sows. An experiment was performed to evaluate these effects in a herd of sows, with weaning at 9 or 10 days post-farrowing, located in west of Minas Gerais, Brazil. Large-White sows (n=102), with three or four previous parturitions were randomly allocated to three treatment groups: T1: artificial insemination (AI) at first post-weaning estrus of the sows; T2: AI at second post-weaning estrus, T3: AI at first estrus, after an administration of a daily individual dose of 20 mg of altrenogest from 5 to 8 days post-weaning. The duration of the first post-weaning estrus did not differ among treatment groups; however, the second estrus of the T2 group was of shorter duration relative to the other treatment groups (P< or =0.035). Ovulation occurred earlier at the second estrus of the T2 group, compared with the T1 and T3 groups (P< or =0.027), being similar to that at the first estrus of T2 group (P=0.177). The relationship of the timing between ovulation and estrus was similar among treatment groups (P> or =0.221). There was no difference in farrowing rate among treatment groups (P> or =0.313). The T2 group produced a mean of 2.5 more piglets per litter (P=0.002). In conclusion, the use of altrenogest did not increase the reproductive performance of early-weaned sows.     

Alignment of RNA base pairing probability matrices

MOTIVATION: Many classes of functional RNA molecules are characterized by highly conserved secondary structures but little detectable sequence similarity. Reliable multiple alignments can therefore be constructed only when the shared structural features are taken into account. Since multiple alignments are used as input for many subsequent methods of data analysis, structure-based alignments are an indispensable necessity in RNA bioinformatics. RESULTS: We present here a method to compute pairwise and progressive multiple alignments from the direct comparison of base pairing probability matrices. Instead of attempting to solve the folding and the alignment problem simultaneously as in the classical Sankoff's algorithm, we use McCaskill's approach to compute base pairing probability matrices which effectively incorporate the information on the energetics of each sequences. A novel, simplified variant of Sankoff's algorithms can then be employed to extract the maximum-weight common secondary structure and an associated alignment. AVAILABILITY: The programs pmcomp and pmmulti described in this contribution are implemented in Perl and can be downloaded together with the example datasets from http://www.tbi.univie.ac.at/RNA/PMcomp/. A web server is available at http://rna.tbi.univie.ac.at/cgi-bin/pmcgi.pl     

Prediction of consensus RNA secondary structures including pseudoknots

Most functional RNA molecules have characteristic structures that are highly conserved in evolution. Many of them contain pseudoknots. Here, we present a method for computing the consensus structures including pseudoknots based on alignments of a few sequences. The algorithm combines thermodynamic and covariation information to assign scores to all possible base pairs, the base pairs are chosen with the help of the maximum weighted matching algorithm. We applied our algorithm to a number of different types of RNA known to contain pseudoknots. All pseudoknots were predicted correctly and more than 85 percent of the base pairs were identified.