Contrasted effects of an oxidative challenge and α-melanocyte-stimulating hormone on cellular immune responsiveness: an experiment with red-legged partridges Alectoris rufa

Oxidative stress is increasingly recognized as a key selective force shaping evolutionary trade-offs. One such trade-off involves investing in immunity versus combating oxidative stress. While there is broad evidence that mounting an immune response causes increased oxidative stress, the effect that increased oxidative stress during development has at a later stage on immune responsiveness remains little known. The production of melanin-based coloration in vertebrates is influenced by oxidative stress and by hormones, such as the alpha-melanocyte-stimulating hormone (α-MSH). Oxidative stress could impair immunity, and this might be a cost associated with the production of melanin traits. α-MSH has immunomodulatory effects, with most evidence pointing towards an improvement of immunity (improved pro-inflammatory activity). Here, we investigated the effects of an oxidative challenge (exposure to a pro-oxidant compound, diquat) and of experimentally elevated α-MSH on the cell-mediated immune responses (CMIR) of growing young (1 month old) red-legged partridges Alectoris rufa in captivity. CMIR were assessed in response to primary and secondary challenges with phytohemagglutinin (PHA). We specifically tested whether an oxidative challenge during growth and development had a delayed effect (4 months after exposure) on immunity. We found that the diquat treatment did not affect primary CMIR, but significantly reduced secondary CMIR. Elevated α-MSH increased primary CMIR in males, but not in females. Our experimental results are consistent with a trade-off between investing in activities that generate oxidative stress (e.g., growth, reproduction, production of ornaments) versus investing in immunity, and shed new lights onto the inter-relationships between immunity, oxidative stress and the expression of melanin-based coloration in vertebrates, revealing a novel, delayed physiological cost that can contribute to ensuring honest signaling.     

Transparent mediation-based access to multiple yeast data sources using an ontology driven interface

Background

Over the past decade the workflow system paradigm has evolved as an efficient and user-friendly approach for developing complex bioinformatics applications. Two popular workflow systems that have gained acceptance by the bioinformatics community are Taverna and Galaxy. Each system has a large user-base and supports an ever-growing repository of application workflows. However, workflows developed for one system cannot be imported and executed easily on the other. The lack of interoperability is due to differences in the models of computation, workflow languages, and architectures of both systems. This lack of interoperability limits sharing of workflows between the user communities and leads to duplication of development efforts.

Results

In this paper, we present Tavaxy, a stand-alone system for creating and executing workflows based on using an extensible set of re-usable workflow patterns. Tavaxy offers a set of new features that simplify and enhance the development of sequence analysis applications: It allows the integration of existing Taverna and Galaxy workflows in a single environment, and supports the use of cloud computing capabilities. The integration of existing Taverna and Galaxy workflows is supported seamlessly at both run-time and design-time levels, based on the concepts of hierarchical workflows and workflow patterns. The use of cloud computing in Tavaxy is flexible, where the users can either instantiate the whole system on the cloud, or delegate the execution of certain sub-workflows to the cloud infrastructure.

Conclusions

Tavaxy reduces the workflow development cycle by introducing the use of workflow patterns to simplify workflow creation. It enables the re-use and integration of existing (sub-) workflows from Taverna and Galaxy, and allows the creation of hybrid workflows. Its additional features exploit recent advances in high performance cloud computing to cope with the increasing data size and complexity of analysis. The system can be accessed either through a cloud-enabled web-interface or downloaded and installed to run within the user's local environment. All resources related to Tavaxy are available at http://www.tavaxy.org.     

Sequential Activation of Classic PKC and Estrogen Receptor α Is Involved in Estradiol 17?-D-Glucuronide-Induced Cholestasis

Estradiol 17ß-d-glucuronide (E17G) induces acute cholestasis in rat with endocytic internalization of the canalicular transporters bile salt export pump (Abcb11) and multidrug resistance-associated protein 2 (Abcc2). Classical protein kinase C (cPKC) and PI3K pathways play complementary roles in E17G cholestasis. Since non-conjugated estradiol is capable of activating these pathways via estrogen receptor alpha (ERα), we assessed the participation of this receptor in the cholestatic manifestations of estradiol glucuronidated-metabolite E17G in perfused rat liver (PRL) and in isolated rat hepatocyte couplets (IRHC). In both models, E17G activated ERα. In PRL, E17G maximally decreased bile flow, and the excretions of dinitrophenyl-glutathione, and taurocholate (Abcc2 and Abcb11 substrates, respectively) by 60% approximately; preadministration of ICI 182,780 (ICI, ERα inhibitor) almost totally prevented these decreases. In IRHC, E17G decreased the canalicular vacuolar accumulation of cholyl-glycylamido-fluorescein (Abcb11 substrate) with an IC50 of 91±1 µM. ICI increased the IC50 to 184±1 µM, and similarly prevented the decrease in the canalicular vacuolar accumulation of the Abcc2 substrate, glutathione-methylfluorescein. ICI also completely prevented E17G-induced delocalization of Abcb11 and Abcc2 from the canalicular membrane, both in PRL and IRHC. The role of ERα in canalicular transporter internalization induced by E17G was confirmed in ERα-knocked-down hepatocytes cultured in collagen sandwich. In IRHC, the protection of ICI was additive to that produced by PI3K inhibitor wortmannin but not with that produced by cPKC inhibitor Gö6976, suggesting that ERα shared the signaling pathway of cPKC but not that of PI3K. Further analysis of ERα and cPKC activations induced by E17G, demonstrated that ICI did not affect cPKC activation whereas Gö6976 prevented that of ERα, indicating that cPKC activation precedes that of ERα. Conclusion: ERα is involved in the biliary secretory failure induced by E17G and its activation follows that of cPKC.     

Synopsis of the rupicolous vegetation of Galicia (North-western Iberian Peninsula)

In this paper we present a synopsis of the rupicolous vegetation found in Galicia, according to the Zürich-Montpellier School. The climate of this territory, an area of 29,439 km² situated in the Northwest of the Iberian Peninsula, is largely Atlantic European becoming subhumid Mediterranean with a Central European tendency in the east of the region. There is an appreciable summer drought but annual rainfall is high: ombroclime is thus hyperhumid or humid becoming subhumid in the Southeast. Biogeographically most of the area is Eurosiberian except part of the Southeast, which is Mediterranean. Acidic rocks (granites, gneissic, schists and slates) predominate; there are also smaller areas of limestone, gabbros, and metabasic and ultrabasic rocks, some of this last type are serpentine. In this synthesis, we report 17 associations and 16 subassociations as well as 3 communities of unknown syntaxonomy. Of these, 1 association and 9 subassociations are described as new syntaxa and the names of 3 associations are corrected. The principal ecological conditions that influence the composition and distribution of these associations and its biogeographic and bioclimatic characteristics are presented in two summarizing tables. Floristic differences between the associations included in this synopsis are summarized in a synoptic table.     

Phylogenetic relationships of rhizobia based on citrate synthase gene sequences

Partial nucleotide sequences of the citrate synthase (gltA) gene from different rhizobia genera were determined. Tree topologies based on this housekeeping gene were similar to that obtained using 16S rRNA sequences. However gltA appeared to be more reliable at determining phylogenetic relationships of closely related taxa. We propose gltA sequences as an additional tool to be used in molecular phylogenetic studies.