Distinct gene loci control the host response to influenza H1N1 virus infection in a time-dependent manner

ABSTRACT: BACKGROUND: There is strong but mostly circumstantial evidence that genetic factors modulate the severity of influenza infection in humans. Using genetically diverse but fully inbred strains of mice it has been shown that host sequence variants have a strong influence on the severity of influenza A disease progression. In particular, C57BL/6 J, the most widely used mouse strain in biomedical research, is comparatively resistant. In contrast, DBA/2 J is highly susceptible. RESULTS: To map regions of the genome responsible for differences in influenza susceptibility, we infected a family of 53 BXD-type lines derived from a cross between C57BL/6 J and DBA/2 J strains with influenza A virus (PR8, H1N1). We monitored body weight, survival, and mean time to death for 13 days after infection. Qivr5 (quantitative trait for influenza virus resistance on chromosome 5) was the largest and most significant QTL for weight loss. The effect of Qivr5 was detectable on day 2 post infection, but was most pronounced on days 5 and 6. Survival rate mapped to Qivr5, but additionally revealed a second significant locus on chromosome 19 (Qivr19). Analysis of mean time to death affirmed both Qivr5 and Qivr19. In addition, we observed several regions of the genome with suggestive linkage. There are potentially complex combinatorial interactions of the parental alleles among loci. Analysis of multiple gene expression data sets and sequence variants in these strains highlights about 30 strong candidate genes across all loci that may control influenza A susceptibility and resistance. CONCLUSIONS: We have mapped influenza susceptibility loci to chromosomes 2, 5, 16, 17, and 19. Body weight and survival loci have a time-dependent profile that presumably reflects the temporal dynamic of the response to infection. We highlight candidate genes in the respective intervals and review their possible biological function during infection.     

Mortality and Health Outcomes of HIV-Exposed and Unexposed Children in a PMTCT Cohort in Malawi

Background

Mortality and morbidity among HIV-exposed children are thought to be high in Malawi. We sought to determine mortality and health outcomes of HIV-exposed and unexposed infants within a PMTCT program.

Method

Data were collected as part of a retrospective cohort study in Zomba District, Malawi. HIV-infected mothers were identified via antenatal, delivery and postpartum records with a delivery date 18–20 months prior; the next registered HIV-uninfected mother was identified as a control. By interview and health record review, data on socio-demographic characteristics, service uptake, and health outcomes were collected. HIV-testing was offered to all exposed children.

Results

173 HIV-infected and 214 uninfected mothers were included. 4 stillbirths (1.0%) occurred; among the 383 livebirths, 41 (10.7%) children died by 20 months (32 (18.7%) HIV-exposed and 9 unexposed children (4.3%; p<0.0001)). Risk factors for child death included: HIV-exposure [adjOR2.9(95%CI 1.1–7.2)], low birthweight [adjOR2.5(1.0–6.3)], previous child death (adjOR25.1(6.5–97.5)] and maternal death [adjOR5.3(11.4–20.5)]. At 20 months, HIV-infected children had significantly poorer health outcomes than HIV-unexposed children and HIV-exposed but uninfected children (HIV-EU), including: hospital admissions, delayed development, undernutrition and restrictions in function (Lansky scale); no significant differences were seen between HIV-EU and HIV-unexposed children. Overall, no difference was seen at 20 months among HIV-infected, HIV-EU and HIV-unexposed groups in Z-scores (%<−2.0) for weight, height and BMI. Risk factors for poor functional health status at 20 months included: HIV-infection [adjOR8.9(2.4–32.6)], maternal illness [adjOR2.8(1.5–5.0)] and low birthweight [adjOR2.0(1.0–4.1)].

Conclusion

Child mortality remains high within this context and could be reduced through more effective PMTCT including prioritizing the treatment of maternal HIV infection to address the effect of maternal health and survival on infant health and survival. HIV-infected children demonstrated developmental delays, functional health and nutritional deficits that underscore the need for increased uptake of early infant diagnosis and institution of ART for all infected infants.     

Age–size–habitat relationships for <Emphasis Type="Italic">Polylepis australis</Emphasis>: dealing with endangered forest ecosystems

Assessing tree ages is important for the understanding of forest recruitment patterns and tree growth. However, little experience exists in the subtropics and accurate aging usually involves potentially damaging techniques such as tree coring or even the use of entire cross sections, which is not recommendable in endangered species or ecosystems. We provide an example of how age may be predicted on the basis of tree size and site conditions, using Polylepis australis of Central Argentina. Our study was conducted in two entire river basins where 96 independent trees were successfully cored for age analysis. Site and tree characteristics were registered and tree age determined through standard dendrochronological techniques. The multiple regression procedure selected tree circumference and proportion of rock under the tree canopy as significant variables explaining 48% of the variation in number of growth rings. Trees surrounded by rock clearly grew slower than those surrounded by a higher proportion of soil and vegetation. A comparison with a one site study shows that the ability to predict P. australis age is clearly reduced when geographical range is extended but the explanatory power of our model is still high enough for certain applications and within the range of other one site studies. We suggest that tree size and site characteristics may be used to predict age in other subtropical mountain forests with a well marked growth season.     

Expression of Tight Junction Proteins and Cadherin 17 in the Small Intestine of Young Goats Offered a Reduced N and/or Ca Diet

Diets fed to ruminants should contain nitrogen (N) as low as possible to reduce feed costs and environmental pollution. Though possessing effective N-recycling mechanisms to maintain the N supply for rumen microbial protein synthesis and hence protein supply for the host, an N reduction caused substantial changes in calcium (Ca) and phosphate homeostasis in young goats including decreased intestinal transepithelial Ca absorption as reported for monogastric species. In contrast to the transcellular component of transepithelial Ca transport, the paracellular route has not been investigated in young goats. Therefore, the aim of the present study was to characterise the effects of dietary N and/or Ca reduction on paracellular transport mechanisms in young goats. Electrophysiological properties of intestinal epithelia were investigated by Ussing chamber experiments. The expression of tight junction (TJ) and adherens junction (AJ) proteins in intestinal epithelia were examined on mRNA level by qPCR and on protein level by western blot analysis. Dietary N reduction led to a segment specific increase in tissue conductances in the proximal jejunum which might be linked to concomitantly decreased expression of cadherin 17 mRNA. Expression of occludin (OCLN) and zonula occludens protein 1 was increased in mid jejunal epithelia of N reduced fed goats on mRNA and partly on protein level. Reduced dietary Ca supply resulted in a segment specific increase in claudin 2 and claudin 12 expression and decreased the expression of OCLN which might have been mediated at least in part by calcitriol. These data show that dietary N as well as Ca reduction affected expression of TJ and AJ proteins in a segment specific manner in young goats and may thus be involved in modulation of paracellular Ca permeability.     

Multiple common garden experiments suggest lack of local adaptation in an invasive ornamental plant

Aims Adaptive evolution along geographic gradients of climatic conditions is suggested to facilitate the spread of invasive plant species, leading to clinal variation among populations in the introduced range. We investigated whether adaptation to climate is also involved in the invasive spread of an ornamental shrub, Buddleja davidii, across western and central Europe.Methods We combined a common garden experiment, replicated in three climatically different central European regions, with reciprocal transplantation to quantify genetic differentiation in growth and reproductive traits of 20 invasive B. davidii populations. Additionally, we compared compensatory regrowth among populations after clipping of stems to simulate mechanical damage.Important findings Our results do not provide evidence for clinal variation among invasive B. davidii populations: populations responded similarly to the different environments, and trait values were not correlated to climatic conditions or geographic coordinates of their home sites. Moreover, we did not detect differences in the compensatory ability of populations. We suppose that the invasive spread of B. davidii has been facilitated by phenotypic plasticity rather than by adaptation to climate and that continent-wide shuffling of cultivars due to horticultural trade may have limited local adaptation so far.     

Post-Fire Population Dynamics of Two Tree Species in High-Altitude Polylepis Forests of Central Ecuador

Fire is considered the main cause for the patchy distribution of high-montane tropical forests growing below the upper limit of tree growth, but there are little quantitative data on the impacts of burning on the respective tree populations. This study compares adult tree survival as well as sapling (0.05–1.3 m) and seedling (<0.05 m) recruitment of Polylepis incana , and the coexisting Gynoxis acostae in burned and unburned forest stands in the Páramo de Guamaní, central Ecuador. In P. incana , adult survival after burning was low, whereas all G. acostae individuals survived through resprouting. Two years after fire, the density of P. incana seedlings and saplings was higher than that of G. acostae , but still not sufficient for forest recovery. A sowing experiment revealed a significantly lower seedling emergence of both species in the burned than in the unburned plots. Seedling emergence was comparable to laboratory studies performed under optimal conditions, suggesting there was no evidence for climate constraining emergence at the given altitude. Interactions between seedling survival and burning for P. incana indicate higher seedling survival after burning, which could not be shown for G. acostae . Our data imply that single fire events strongly decrease adult and seedling population sizes in P. incana and thus may be the main reason for the discontinuous forest distribution below the upper distribution limit of the species. In contrast, the high resprouting potential of G. acostae explains its relatively high percentage in the remaining Ecuadorian P. incana stands.     

The words of the regulatory code are arranged in a variable manner in highly conserved enhancers

The mammillary body, a ventral specialization of the caudal hypothalamus, lies close to the transition between epichordal and prechordal parts of the forebrain (Puelles and Rubenstein, 2003). This report examines its presumed causal connection with either prechordal or notochordal mesodermal induction, as well as the timing of its specification, in the context of early ventral forebrain patterning. It was recently found that the ephrin receptor gene EphA7 is selectively expressed in the mammillary pouch from early stages of development (HH14: García-Calero et al., 2006). We used mammillary EphA7 expression as well as ventral hypothalamic expression of the gene markers Nkx2.1 and Shh to analyze experimental effects on mammillary specification and morphogenesis after axial mesoderm ablation at stages HH4+ to HH6. Progressively delayed ablation of the prechordal plate revealed its sequential implication in molecular specification of the entire ventral forebrain, including the mammillary and tuberal regions of the hypothalamus. We observed differential contact requirements for induction by the prechordal plate of all the forebrain regions expressing Shh and Nkx2.1, including distant subpallial ones. In contrast, ablation of the anterior notochordal tip at these stages did not elicit significant patterning changes, particularly no effects on mammillary EphA7 expression or mammillary pouch development.