Some virus and virus-like diseases of tobacco,tomato, papaya,and rubber tree in vietnam and cambodia

In Vietnam a green strain of tobacco mosaic virus was isolated having TIP 89°C (10 min) and causing systemic necrosis in tobacoo ‘Xanthi-nc’ and sometimes also inDatura stramonium. In symptomless tomato plants an elongated virus belonging apparently to the Carlavirus group (NL 630 nm) was found. In papaya trees showing severe symptoms of mosaic and/or ringspot elongated virus particles (NL 730 nm) were observed; this virus being apparently a member of the Potyvirus group, resembled as far as its symptoms in papaya are concerned, the papaya ringspot or the distortion ringspot. In Cambodia some young rubber trees showed malformed leaves (esp. edges and veins) with yellow discolorations along the veins. Such leaves contained elongated virus-like particles (rigid or slightly flexible) of various length (60 to 880 nm), so that their normal length (NL) could not be established precisely. Particles 120 to 150 nm long occurred very frequently.     

GRIESBACHIAN AND DIENERIAN (EARLY TRIASSIC) AMMONOID FAUNAS FROM NORTHWESTERN GUANGXI AND SOUTHERN GUIZHOU (SOUTH CHINA)

Abstract: Intensive sampling of the Luolou (northwestern Guangxi) and the Daye (southern Guizhou) Formations in South China leads to the recognition of a regional Griesbachian and Dienerian ammonoid succession for this key palaeobiogeographical area. The new biostratigraphical sequence comprises the upper Griesbachian ‘Ophiceras beds’ and the lower Dienerian ‘Proptychites candidus beds’, which are separated from the uppermost Dienerian ‘Clypites beds’ by an unfossiliferous interval. These faunas contain some taxa with wide geographic distribution (e.g. Ambites, Pleurambites, Pleurogyronites, Proptychites candidus), thus facilitating correlation with faunal successions from other regions (i.e. British Columbia, Canadian Arctic, Himalayas and South Primorye). Two new genera (Jieshaniceras and Shangganites) and three new species (Anotoceras subtabulatus, Pleurambites radiatus and Shangganites shangganense) are described.     

Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the <Emphasis Type="Italic">amoCAB</Emphasis> operon

The genes and intergenic regions of the amoCAB operon were analyzed to establish their potential as molecular markers for analyzing ammonia-oxidizing betaproteobacterial (beta-AOB) communities. Initially, sequence similarity for related taxa, evolutionary rates from linear regressions, and the presence of conserved and variable regions were analyzed for all available sequences of the complete amoCAB operon. The gene amoB showed the highest sequence variability of the three amo genes, suggesting that it might be a better molecular marker than the most frequently used amoA to resolve closely related AOB species. To test the suitability of using the amoCAB genes for community studies, a strategy involving nested PCR was employed. Primers to amplify the whole amoCAB operon and each individual gene were tested. The specificity of the products generated was analyzed by denaturing gradient gel electrophoresis, cloning, and sequencing. The fragments obtained showed different grades of sequence identity to amoCAB sequences in the GenBank database. The nested PCR approach provides a possibility to increase the sensitivity of detection of amo genes in samples with low abundance of AOB. It also allows the amplification of the almost complete amoA gene, with about 300 bp more sequence information than the previous approaches. The coupled study of all three amo genes and the intergenic spacer regions that are under different selection pressure might allow a more detailed analysis of the evolutionary processes, which are responsible for the differentiation of AOB communities in different habitats. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Pilar Junier and Ok-Sun Kim contributed equally to this work.     

Communities of green sulfur bacteria in marine and saline habitats analyzed by gene sequences of 16S rRNA and Fenna-Matthews-Olson protein.

Communities of green sulfur bacteria were studied in selected marine and saline habitats on the basis of gene sequences of 16S rRNA and the Fenna- Matthews-Olson (FMO) protein. The availability of group-specific primers for both 16S rDNA and the fmoA gene, which is unique to green sulfur bacteria, has, for the first time, made it possible to analyze environmental communities of these bacteria by culture-independent methods using two independent genetic markers. Sequence results obtained with fmoA genes and with 16S rDNA were largely congruent to each other. All of the 16S rDNA and fmoA sequences from habitats of the Baltic Sea, the Mediterranean Sea, Sippewissett Salt Marsh (Massachusetts, USA), and Bad Water (Death Valley, California, USA) were found within salt-dependent phylogenetic lines of green sulfur bacteria established by pure culture studies. This strongly supports the existence of phylogenetic lineages of green sulfur bacteria specifically adapted to marine and saline environments and the exclusive occurrence of these bacteria in marine and saline habitats. The great majority of clone sequences belonged to different clusters of the Prosthecochloris genus and probably represent different species. Evidence for the occurrence of two new species of Prosthecochloris was also obtained. Different habitats were dominated by representatives from the Prosthecochloris group and different clusters or species of this genus were found either exclusively or as the clearly dominant green sulfur bacterium at different habitats.     

Autoradiographic Evidence for the Impermeability of Mouse Peritoneal Macrophages to Tritiated Streptomycin

Cultured mouse peritoneal macrophages were found to be relatively impermeable to streptomycin. Based on radioactivity measurements and radioautographic evidence, macrophages were impermeable to tritiated dihydrostreptomycin for periods up to 20 hr of incubation. Little or no intracellular streptomycin could be detected even when incubation was carried out in the presence of therapeutic blood levels of carrier dihydrostreptomycin. When the cultured mouse macrophages were allowed to phagocytize staphylococci, yeast cells, or polystyrene latex particles in the presence of tritiated streptomycin, the impermeability of the cells to the antibiotic was not affected. These observations suggested that the process of phagocytosis does not facilitate the intracellular accumulation of streptomycin, as seems to be the case for the fixed phagocytic cells of the liver.     

Trafficking and localization studies of recombinant alpha1, 3- fucosyltransferase VI stably expressed in CHO cells

Peripheral alpha1,3-fucosylation of glycans occurs by the action of either one of five different alpha1,3-fucosyltransferases (Fuc-Ts) cloned to date. Fuc-TVI is one of the alpha1,3-fucosyltransferases which is capable to synthesize selectin ligands. The major alpha1, 3- fucosyltransferase activity in human plasma is encoded by the gene for fucosyltransferase VI, which presumably originates from liver cells. While the sequence, chromosomal localization, and kinetic properties of Fuc-TVI are known, immunocytochemical localization and trafficking studies have been impossible because of the lack of specific antibodies. Here we report on the development and characterization of a peptide-specific polyclonal antiserum monospecific to Fuc-TVI and an antiserum to purified soluble recombinant Fuc-TVI crossreactive with Fuc-TIII and Fuc-TV. Both antisera were applied for immunodetection in stably transfected CHO cells expressing the full-length form of this enzyme (CHO clone 61/11). Fuc-TVI was found to be a resident protein of the Golgi apparatus. In addition, more than 30% of cell-associated and released enzyme activity was found in the medium. Maturation and release of Fuc-TVI was analyzed in metabolically labeled CHO 61/11 cells followed by immunoprecipitation. Fuc-TVI occurred in two forms of 47 kDa and 43 kDa bands, while the secreted form was detected as a 43 kDa. These two different intracellular forms arose by posttranslational modification, as shown by pulse-chase experiments. Fuc-TVI was released to the supernatant by proteolytic cleavage as a partially endo-H resistant glycoform.      

Comprehensive Investigation of Marine Actinobacteria Associated with the Sponge Halichondria panicea

Representatives of Actinobacteria were isolated from the marine sponge Halichondria panicea collected from the Baltic Sea (Germany). For the first time, a comprehensive investigation was performed with regard to phylogenetic strain identification, secondary metabolite profiling, bioactivity determination, and genetic exploration of biosynthetic genes, especially concerning the relationships of the abundance of biosynthesis gene fragments to the number and diversity of produced secondary metabolites. All strains were phylogenetically identified by 16S rRNA gene sequence analyses and were found to belong to the genera Actinoalloteichus, Micrococcus, Micromonospora, Nocardiopsis, and Streptomyces. Secondary metabolite profiles of 46 actinobacterial strains were evaluated, 122 different substances were identified, and 88 so far unidentified compounds were detected. The extracts from most of the cultures showed biological activities. In addition, the presence of biosynthesis genes encoding polyketide synthases (PKSs) and nonribosomal peptide synthetases (NRPSs) in 30 strains was established. It was shown that strains in which either PKS or NRPS genes were identified produced a significantly higher number of metabolites and exhibited a larger number of unidentified, possibly new metabolites than other strains. Therefore, the presence of PKS and NRPS genes is a good indicator for the selection of strains to isolate new natural products.Sponges are multicellular invertebrates and sessile filter feeders which are abundant in the oceans as well as in freshwater habitats (41). They gained great interest due to their association with a wide variety of microorganisms. These microorganisms are known to be a rich source of secondary metabolites (108), which exhibit a broad range of bioactivities such as inhibition of enzyme activities and cell division and antiviral, antimicrobial, anti-inflammatory, antitumor, cytotoxic, and cardiovascular properties (77).Numerous studies concerning specific aspects of sponge-bacterium associations were accomplished using distinct methods for the evaluation of the microbial diversity (mostly molecular approaches) or the bioactivities (culture-dependent methods) or biosynthetic aspects (chemical analyses and molecular approaches) of secondary metabolites of the associated bacteria (19, 47, 51, 54, 110, 122, 126). So far, there is less comprehensive information about the integration of this knowledge into concepts for sponge-bacterium interactions based on small molecules.We focused on Actinobacteria associated with Halichondria panicea Pallas (Porifera, Demospongiae, Halichondriida, Halichondriidae), a sponge species living in coastal habitats worldwide (9). Previous work demonstrated a phylogenetically diverse array of bacterial groups present in this sponge: representatives of Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Cytophaga/Flavobacteria, the Deinococcus group, low-G+C-content Gram-positive bacteria, Actinobacteria, and Planctomycetales were identified by means of a genetic approach (47, 122). Among these, though representing only 3 to 20% of the sponge-associated bacterial community (41, 47, 103), Actinobacteria are the most promising bacterial group regarding secondary metabolite production. Members of this phylum account for approximately half of the bioactive secondary metabolites that have so far been discovered in bacteria (64). Although the majority of secondary metabolite-producing Actinobacteria originate from terrestrial habitats (101), recent studies of marine Actinobacteria have revealed many new chemical entities and bioactive metabolites (13, 30, 50, 100). Among these, only a few substances were isolated from Actinobacteria associated with H. panicea (85, 123), e.g., the antimicrobially active substances 2,4,4′-trichloro-2′-hydroxydiphenylether and acyl-1-(acyl-6′-mannobiosyl)-3-glycerol produced by Micrococcus luteus (17). By combining data about the phylogenetic characterization of the Actinobacteria associated with H. panicea, their biosynthetic potential for secondary metabolite production, and their chemical profiles, we present comprehensive insights into a great variety of produced natural products as well as their bioactivities. By means of these results, we attempt to close the gap of knowledge about Actinobacteria associated with H. panicea and discuss the biological roles of identified small molecules in the sponge-associated community.     

Secondary metabolites from Calotropis procera (Aiton)

Three new metabolites, 5-hydroxy-3,7-dimethoxyflavone-4′-O-β-glucopyranoside (1), 2β,19-epoxy-3β,14β-dihydroxy-19-methoxy-5α-card-20(22)-enolide (4) and β-anhydroepidigitoxigenin-3β-O-glucopyranoside (5), along with two known compounds, uzarigenine (2) and β-anhydroepidigitoxigenin (3), were isolated from Calotropis procera (Asclepiadaceae). The structure elucidation was accomplished mainly by nuclear magnetic resonance (NMR) spectroscopic and mass spectrometric methods. To examine putative antimicrobial or cytotoxic activities, various bioassays were performed. Uzarigenine (2) demonstrated moderate cytotoxicity.