Blue native PAGE

Blue native PAGE (BN-PAGE) can be used for one-step isolation of protein complexes from biological membranes and total cell and tissue homogenates. It can also be used to determine native protein masses and oligomeric states and to identify physiological protein-protein interactions. Native complexes are recovered from gels by electroelution or diffusion and are used for 2D crystallization and electron microscopy or analyzed by in-gel activity assays or by native electroblotting and immunodetection. In this protocol, we describe methodology to perform BN-PAGE followed by (i) native extraction or native electroblotting of separated proteins, or (ii) a second dimension of tricine-SDS-PAGE or modified BN-PAGE, or (iii) a second dimension of isoelectric focusing (IEF) followed by a third dimension of tricine-SDS-PAGE for the separation of subunits of complexes. These protocols for 2D and 3D PAGE can be completed in 2 and 3 days.     

Conditional expression of Spry1 in neural crest causes craniofacial and cardiac defects

Background  

Growth factors and their receptors are mediators of organogenesis and must be tightly regulated in a temporal and spatial manner for proper tissue morphogenesis. Intracellular regulators of growth factor signaling pathways provide an additional level of control. Members of the Sprouty family negatively regulate receptor tyrosine kinase pathways in several developmental contexts. To gain insight into the role of Spry1 in neural crest development, we analyzed the developmental effects of conditional expression of Spry1 in neural crest-derived tissues.     

First selective agonist of the neuropeptide Y1‐receptor with reduced size

Selective NPY analogues are potent tools for tumour targeting. Their Y₁‐receptors are significantly over‐expressed in human breast tumours, whereas normal breast tissue only expresses Y₂‐receptors. The endogenous peptide consists of 36 amino acids, whereas smaller peptides are preferred because of better labelling efficiencies. As Y₁‐receptor agonists enhance the tumour to background ratio compared to Y₁‐receptor antagonists, we were interested in the development of Y₁‐receptor selective agonists. We designed 19 peptides containing the C‐terminus of NPY (28–36) with several modifications. By using competition receptor binding affinity assays, we identified three NPY analogues with high Y₁‐receptor affinity and selectivity. Metabolic stability studies in human blood plasma of the N‐terminally 5(6)‐carboxyfluorescein (CF) labelled peptides resulted in half‐lives of several hours. Furthermore, the degradation pattern revealed proteolytic degradation of the peptides by amino peptidases. The most promising peptide was further investigated in receptor activation and internalization studies. Signal transduction assays revealed clear agonistic properties, which could be confirmed by microscopy studies that showed clear Y₁‐receptor internalization. For the first time, here we show the design and characterization of a small Y₁‐receptor selective agonist. This agonist might be a useful novel ligand for NPY‐mediated tumour diagnostics and therapeutics. Copyright © 2009 European Peptide Society and John Wiley & Sons, Ltd.     

β-(1,3)-Glucan Exposure Assessment by Passive Airborne Dust Sampling and New Sensitive Immunoassays

Associations between house dust-associated β-(1,3)-glucan exposure and airway inflammatory reactions have been reported, while such exposures in early childhood have been suggested to protect against asthma and wheezing. Most epidemiological studies have used reservoir dust samples and an inhibition enzyme immunoassay (EIA) for β-(1,3)-glucan exposure assessment. The objective of this study was to develop inexpensive but highly sensitive enzyme immunoassays to measure airborne β-(1,3)-glucans in low-exposure environments, like homes. Specificities of available anti-β-(1,3)-glucan antibodies were defined by direct and inhibition experiments. Three suitable antibody combinations were selected for sandwich EIAs. β-(1,3)-Glucans in passive airborne dust collected with an electrostatic dust fall collector (EDC) and floor dust from seven homes were measured with the three EIAs. Floor dust samples were additionally analyzed in the inhibition EIA. The sandwich EIAs were sensitive enough for airborne glucan measurement and showed different specificities for commercial glucans, while the β-(1,3)-glucan levels in house dust samples correlated strongly. The feasibility of measuring glucans in airborne dust with the recently introduced EDC method was further investigated by selecting the most suitable of the three EIAs to measure and compare β-(1,3)-glucan levels in the EDC and in floor and actively collected airborne dust samples of the previously performed EDC validation study. The EDC β-(1,3)-glucan levels correlated moderately with β-(1,3)-glucans in actively collected airborne dust and floor dust samples, while the glucan levels in the airborne dust and floor dust samples did not correlate. The combination of the newly developed β-(1,3)-glucan sandwich EIA with EDC sampling now allows assessment in large-scale population studies of exposure to airborne β-(1,3)-glucans in homes or other low-exposure environments.β-(1,3)-Glucans are polysaccharides produced by plants, bacteria, and fungi. Their chain lengths, their degrees of branching, and the numbers and positions of their other glycosidic linkages, like β-(1,4)- and/or β-(1,6)-linkages, may vary largely. While β-(1,3)-(1,4)-glucan structures are typically found in plant material, β-(1,3)-(1,6)-chains are more prevalent in fungi and bacteria (31). Because they are typical microbe-associated molecular patterns (MAMPs), β-(1,3)-glucans activate cells of the innate immune system by binding to glucan-specific receptors like dectin-1 (1, 4, 6) and other cellular membrane receptors (5, 21). Associations between indoor β-(1,3)-glucan exposure and inflammatory reactions of the respiratory system have been reported (3, 10, 25, 33, 34, 40), but protective effects of glucan exposure in early childhood against the development of asthma and allergy have also been suggested (9, 13, 15, 29). β-(1,3)-Glucans are less potent inducers of inflammatory reactions than bacterial endotoxins (16, 30, 35), but since their total amounts in our environment may be much higher—glucans are measured in micrograms per milligram of house dust, whereas endotoxins are measured in nanograms per milligram of house dust (10, 14, 29, 37)—their proinflammatory impact may be similar to that of endotoxin exposure.An inexpensive and relatively simple β-(1,3)-glucan-specific inhibition immunoassay was introduced in the mid-1990s by Douwes et al. (8). This assay has found wide application in large-scale population studies in which glucans have been routinely measured in dust from mattresses and living room and/or bedroom floors (9, 10, 12, 13, 29). However, while useful for quantification of β-(1,3)-glucans in extracts with >1 to 2% (wt/vol) floor or mattress dust, the sensitivity of the assay is usually too low for airborne measurements. Even in environments with high microbial contaminations, like the household waste recycling industry (36), β-(1,3)-glucan levels in airborne dust samples may often remain under the limit of detection. Until recently, the only published methods sensitive enough to measure β-(1,3)-glucans in airborne dust samples were the modified Limulus amebocyte lysate (LAL) assay (a modification of the endotoxin assay with which glucans can be specifically detected [11]) and two sandwich enzyme immunoassays (EIAs) (2, 23, 27). Due to its high cost, which is at least 5-fold higher than that of the inhibition EIA, the LAL assay has thus far hardly been used in epidemiological studies. The assay developed by Sander et al. (27) has been applied to only a limited number of samples from the work environment, and the EIA described by Blanc et al. (2) and Rao et al. (23) has been used only to analyze reservoir and airborne dust samples from heavily mold-contaminated houses in New Orleans after the hurricanes Katrina and Rita. A third sensitive EIA makes use of galactosyl ceramide, a receptor specific for β-(1,3)-glucans (41), as the capture reagent and of a monoclonal antibody specific for β-(1,3)-(1,6)-glucans as the detecting antibody (20). Application of this EIA in population studies has, however, not yet been reported.Apart from the low sensitivity of the inhibition EIA and/or high cost of the modified LAL assay, the time, equipment, and budget needed for active sampling of airborne dust are reasons why epidemiological studies have relied mainly on β-(1,3)-glucan analyses of reservoir dust samples from floors or mattresses. β-(1,3)-Glucan levels in airborne dust samples may, however, be more representative of real inhalatory exposures.The aim of this study was to develop new sensitive but inexpensive assays for β-(1,3)-glucans in airborne dust from homes or other locations with low exposure levels. We combined methods and reagents from three laboratories that previously developed and applied β-glucan EIAs (2, 8, 23, 27). The specificities of available antibodies to a panel of 13 different glucans were determined to assess whether it is possible to develop sandwich assays that would show clear differences in specificities toward glucans from different taxonomic sources—bacterial, fungal, or plant derived—and/or between glucans with different chemical structures.Another objective of the present study was to explore the feasibility of using our recently developed passive airborne dust sampling method, the electrostatic dust fall collector (EDC) (22), for assessing exposure to glucans in airborne dust in the home environment, when combined with the new sensitive immunoassays.     

Protein kinase C isotypes in signal transduction for the 1,25D3-MARRS receptor (ERp57/PDIA3) in steroid hormone-stimulated phosphate uptake

We undertook studies to determine which isotype(s) of protein kinase C (PKC) is/are activated by ligand binding to the 1,25D₃-MARRS receptor (ERp57/PDIA3) and subsequent stimulation of phosphate uptake. Isolated intestinal epithelial cells from vitamin D-replete chicks were exposed to 1,25(OH)₂D₃ for 1, 3, or 5 min, thoroughly chilled, homogenized, and P₂ fractions (20,000 × g post-nuclear pellet) prepared. Western analyses with anti-pan PKC revealed steroid-stimulated redistribution to P₂ membranes 1 min after hormone. Using this time point, cells were treated with vehicle, 130-, 300- or 650-pM hormone. Western blots with anti-PKCα exhibited redistribution to membranes in a biphasic dose–response curve: slightly stimulated at the lowest dose, maximal at 300 pM 1,25(OH)₂D₃, and equivalent to control levels at the highest dose, paralleling hormone-mediated phosphate uptake. Westerns with anti PKCβ also revealed hormone-mediated differences, while those with anti PKCγ did not. RNAi studies were then performed with siRNA against PKCα or PKCβ. Untransfected cells treated with hormone for 7 min exhibited enhanced ³²P uptake relative to vehicle controls. Cells transfected with either active siRNA revealed decreased ³²P uptake in both controls (relative to untransfected controls), and hormone treated cells. However, control and transfected cells treated with hormone had equivalent levels of uptake. Western blot analyses confirmed decreased immunoreactivity in transfected cells. Chemical PKCα (safingol) and PKCβ ([3-(1-(3-Imidazol-1-ylpropyl)-1H-indol-3-yl)-4-anilino-1H-pyrrole-2,5-dione] blockers also confirmed the results from siRNA and demonstrated decreased ³²P uptake in cells treated with 1,25(OH)₂D₃ plus blockers in comparison with cells treated with 1,25(OH)₂D₃ alone. Thus, PKCα and PKCβ are both involved in steroid-stimulated phosphate uptake.     

Die Rückkehr der Wölfe. Das erste Jahrzehnt

The first decade: the return of the wolves Wolves returned to Saxony in the year 2000 since then they have been regularly rearing pups. Nowadays at least 60‐80 wolves are living in Germany. To face its attendant conflicts a wolf management has been installed including wolf monitoring, public relation work and damage compensation. According to the monitoring wolves feed almost completely on wild ungulates, whereas livestock does not play a major role. The wolves' natural origin from north‐eastern Poland could be proven by genetic analyses. By the use of radiotelemetry important information could be gained on the adaption of the wolves to the anthropogenic landscape.     

Novel cell death program leads to neutrophil extracellular traps

Neutrophil extracellular traps (NETs) are extracellular structures composed of chromatin and granule proteins that bind and kill microorganisms. We show that upon stimulation, the nuclei of neutrophils lose their shape, and the eu- and heterochromatin homogenize. Later, the nuclear envelope and the granule membranes disintegrate, allowing the mixing of NET components. Finally, the NETs are released as the cell membrane breaks. This cell death process is distinct from apoptosis and necrosis and depends on the generation of reactive oxygen species (ROS) by NADPH oxidase. Patients with chronic granulomatous disease carry mutations in NADPH oxidase and cannot activate this cell-death pathway or make NETs. This novel ROS-dependent death allows neutrophils to fulfill their antimicrobial function, even beyond their lifespan.