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981.
L Ye X Su GE Schmitz YH Moon J Zhang RI Mackie IK Cann 《Applied and environmental microbiology》2012,78(19):7048-7059
A large polypeptide encoded in the genome of the thermophilic bacterium Caldicellulosiruptor bescii was determined to consist of two glycoside hydrolase (GH) modules separated by two carbohydrate-binding modules (CBMs). Based on the detection of mannanase and endoglucanase activities in the N-terminal GH5 and the C-terminal GH44 module, respectively, the protein was designated CbMan5B/Cel44A. A GH5 module with >99% identity from the same organism was characterized previously (X. Su, R. I. Mackie, and I. K. Cann, Appl. Environ. Microbiol. 78:2230-2240, 2012); therefore, attention was focused on CbMan5A/Cel44A-TM2 (or TM2), which harbors the GH44 module and the two CBMs. On cellulosic substrates, TM2 had an optimal temperature and pH of 85°C and 5.0, respectively. Although the amino acid sequence of the GH44 module of TM2 was similar to those of other GH44 modules that hydrolyzed cello-oligosaccharides, cellulose, lichenan, and xyloglucan, it was unique that TM2 also displayed modest activity on mannose-configured substrates and xylan. The TM2 protein also degraded Avicel with higher specific activity than activities reported for its homologs. The GH44 catalytic module is composed of a TIM-like domain and a β-sandwich domain, which consists of one β-sheet at the N terminus and nine β-sheets at the C terminus. Deletion of one or more β-sheets from the β-sandwich domain resulted in insoluble proteins, suggesting that the β-sandwich domain is essential for proper folding of the polypeptide. Combining TM2 with three other endoglucanases from C. bescii led to modest synergistic activities during degradation of cellulose, and based on our results, we propose a model for cellulose hydrolysis and utilization by C. bescii. 相似文献
982.
Shin SH Kim S Kim JY Song HY Cho SJ Kim DR Lee KI Lim HK Park NJ Hwang IT Yang KS 《Journal of bacteriology》2012,194(5):1266
This article reports on the full genome sequence of Paenibacillus terrae HPL-003, which is a gram-positive, endospore-forming, xylanase-producing bacterium isolated from soil found in forest residue on Gara Mountain. The strain HPL-003 contains 6,083,395 bp with a G+C content of 46.77 mol%, 2,633 protein-coding genes, and 117 structural RNAs. 相似文献
983.
M. V. Il’ina A. V. Timofeeva V. T. Ivanova E. I. Burtseva L. A. Baratova I. Yu. Sapurina G. S. Katrukha 《Applied Biochemistry and Microbiology》2012,48(8):699-704
A modern nanomaterial made of Taunit multiwalled carbon nanotubes (MWCNTs) was used for the first time to adsorb and desorb gramicidin S and teicoplanin A2 polypeptide antibiotics. Taunit was found to absorb efficiently antibiotics under particular conditions when MWCNTs were taken in excess at 20°C for 18 h. The desorption efficiency depended on the eluent content and the structure of antibiotics. The teicoplanin A2 antibiotic was eluted with a higher yield because of its higher polarity compared to gramicidin S (86% against 65% of the total Taunit-bound antibiotic). 相似文献
984.
Calix JJ Porambo RJ Brady AM Larson TR Yother J Abeygunwardana C Nahm MH 《The Journal of biological chemistry》2012,287(33):27885-27894
The bacterial pathogen Streptococcus pneumoniae expresses one of over 90 structurally distinct polysaccharide (PS) capsule serotypes. Prior PS structural analyses of the vaccine-associated serotype 20 do not agree with reports describing the genes that mediate capsule synthesis. Furthermore, using immunized human sera-based assays, serological differences were recently noted among strains typed as serotype 20. We examined the capsule structures of two serologically dissimilar serotype 20 strains, 20α and 20β, by extensive biochemical analysis. 20α PS was composed of the previously described serotype 20 hexasaccharide repeat unit, whereas the 20β PS was composed of a novel heptasaccharide repeat unit containing an extra branching α-glucose residue. Genetic analysis of the subtypes revealed that 20α may have arisen from a 20β progenitor following loss of function mutation to the glycosyltransferase gene whaF. Conventional serotyping methods using rabbit polyclonal or mouse monoclonal antibodies were unable to distinguish the subtypes. However, genetic analysis of multiple "serotype 20" clinical isolates revealed that all strains contain the 20β genotype. We propose naming bacteria that express the previously described 20α capsule structure 20A and bacteria that express the novel 20β capsule structure 20B, a new pneumococcal serotype. 相似文献
985.
Kim AJ Choi JN Kim J Yeo SH Choi JH Lee CH 《Bioscience, biotechnology, and biochemistry》2012,76(5):863-869
The present study was focused on improving the quality of rice koji by fermentation with a selected Aspergillus oryzae strain and a plant Astragalus radix. A. oryzae KCCM 60345 was used as main inoculant and the Astragalus radix was added as supplement in rice koji preparation. LC-MS based metabolite analysis and tyrosinase inhibitory activities were studied for different time periods. A. oryzae KCCM 60345 fermented rice koji supplemented with Astragalus showed higher tyrosinase inhibition activity at 4 d of fermentation and metabolite analysis with PCA and PLS-DA indicated differences in kojic acid, calycosin-7-O-β-D-glucoside, ononin, calycosin, and formononetin as compared with other forms of rice koji fermentation. By correlation analysis between metabolites and tyrosinase inhibitory activity, calycosin and kojic acid were identified as major tyrosinase inhibitors. Based on these results, we concluded that A. oryzae KCCM 60345 supplemented with Astragalus radix is useful for whitening effects, and we identified optimal conditions for rice koji preparation. 相似文献
986.
Yee Voon Tang Siew Moi Phang Wan Loy Chu Anthony Ho Soo Hwang Teo Hong Boon Lee 《Journal of applied phycology》2012,24(4):783-790
In screening for novel photosensitizers for photodynamic therapy, 14 seaweed samples from Port Dickson in Malaysia were collected. Methanolic extracts of these samples were prepared and evaluated for phototoxicity using a short-term cell viability assay, where promyelocytic leukemia cells, HL60 were incubated with the extracts prior to irradiation with a broad spectrum light at 9.6?J?cm?2 (equivalent to 10.5?mW?cm?2 for 10?min). Four of the methanolic extracts demonstrated moderate to strong phototoxicity and bioassay-guided isolation of photosensitizers was carried out on two selected seaweeds to yield a total of eight cyclic tetrapyrrolic compounds which are derivatives of chlorophyll-a and -b. Seven of these compounds showed >50% phototoxicity at 5?μg?mL?1 while exhibiting minimal cytotoxicity in the dark, which is an important characteristic of an ideal photosensitizer. 相似文献
987.
Kim J Park C Ok T So W Jo M Seo M Kim Y Sohn JH Park Y Ju MK Kim J Han SJ Kim TH Cechetto J Nam J Sommer P No Z 《Bioorganic & medicinal chemistry letters》2012,22(5):2119-2124
3,4-Dihydropyrimidin-2(1H)-ones (DHPMs) were selected and derivatized through a HIV-1 replication assay based on GFP reporter cells. Compounds 14, 25, 31, and 36 exhibited significant inhibition of HIV-1 replication with a good safety profile. Chiral separation of each enantiomer by fractional crystallization showed that only the S enantiomer retained anti-HIV activity. Compound (S)-40, a novel and potent DHPM analog, could serve as an advanced lead for further development and the determination of the mechanism of action. 相似文献
988.
Bussenius J Anand NK Blazey CM Bowles OJ Bannen LC Chan DS Chen B Co EW Costanzo S DeFina SC Dubenko L Engst S Franzini M Huang P Jammalamadaka V Khoury RG Kim MH Klein RR Laird D Le DT Mac MB Matthews DJ Markby D Miller N Nuss JM Parks JJ Tsang TH Tsuhako AL Wang Y Xu W Rice KD 《Bioorganic & medicinal chemistry letters》2012,22(6):2283-2286
989.
HJ Kim WY Kwak JP Min SY Sung HD Kim MK Kim HS Kim KJ Park MH Son SH Kim BJ Lee 《Bioorganic & medicinal chemistry letters》2012,22(17):5545-5549
Inhibitors of dipeptidyl peptidase-4 (DPP4) have been shown to be effective treatments for type 2 diabetes. Several series of β-amino amide containing piperazine derivatives have been prepared and evaluated as a inhibitor of DPP4. Finally compound 5m was selected for further evaluation. 相似文献
990.
Yu Min Song Young Mi Ha Jin-Ah Kim Ki Wung Chung Yohei Uehara Kyung Jin Lee Pusoon Chun Youngjoo Byun Hae Young Chung Hyung Ryong Moon 《Bioorganic & medicinal chemistry letters》2012,22(24):7451-7455
Ten azo compounds including azo-resveratrol (5) and azo-oxyresveratrol (9) were synthesized using a modified Curtius rearrangement and diazotization followed by coupling reactions with various phenolic analogs. All synthesized compounds were evaluated for their mushroom tyrosinase inhibitory activity. Compounds 4 and 5 exhibited high tyrosinase inhibitory activity (56.25% and 72.75% at 50 μM, respectively). The results of mushroom tyrosinase inhibition assays indicate that the 4-hydroxyphenyl moiety is essential for high inhibition and that 3,5-dihydroxyphenyl and 3,5-dimethoxyphenyl derivatives are better for tyrosinase inhibition than 2,5-dimethoxyphenyl derivatives. Particularly, introduction of hydroxyl or methoxy group into the 4-hydroxyphenyl moiety diminished or significantly reduced mushroom tryosinase inhibition. Among the synthesized azo compounds, azo-resveratrol (5) showed the most potent mushroom tyrosinase inhibition with an IC50 value of IC50 = 36.28 ± 0.72 μM, comparable to that of resveratrol, a well-known tyrosinase inhibitor. 相似文献