PCR multiplexing of nuclear microsatellite loci inQuercus species

Simple sequence repeats have become the tool of choice in a wide range of studies of forest trees. Despite frequent use of multicolor fluorescent labeling DNA fragment analyzers, there are few procedures that reduce time and cost of the analyses by PCR multiplexing. Here we present an example of 2 multiplexes of 7 unlinked nuclear microsatellite loci to increase the efficiency of genotyping of large samples of oaks, which is extremely useful in population genetic studies.     

Myzostomida: A review of the phylogeny and ultrastructure

Myzostomids are minute, soft-bodied, marine worms associated with echinoderms since the Carboniferous. Due to their long history as host-specific symbionts, they have acquired a highly derived body plan that obscures their phylogenetic affinities to other metazoans. Because certain organs are serially arranged a closer relationship between polychaetes and myzostomids has repeatedly been discussion. We presented here a review on the ultrastructure of myzostomids with the most recent analyses that concern their phylogenetic position. The ultrastructure of the integument, digestive system, excretory system and nervous system are summarized. Unpublished information on the gametogenesis and reproductive systems of myzostomids are also exposed with a view on their reproductive process.     

The stochastic edge in adaptive evolution

In a recent article, Desai and Fisher proposed that the speed of adaptation in an asexual population is determined by the dynamics of the stochastic edge of the population, that is, by the emergence and subsequent establishment of rare mutants that exceed the fitness of all sequences currently present in the population. Desai and Fisher perform an elaborate stochastic calculation of the mean time tau until a new class of mutants has been established and interpret 1/tau as the speed of adaptation. As they note, however, their calculations are valid only for moderate speeds. This limitation arises from their method to determine tau: Desai and Fisher back extrapolate the value of tau from the best-fit class's exponential growth at infinite time. This approach is not valid when the population adapts rapidly, because in this case the best-fit class grows nonexponentially during the relevant time interval. Here, we substantially extend Desai and Fisher's analysis of the stochastic edge. We show that we can apply Desai and Fisher's method to high speeds by either exponentially back extrapolating from finite time or using a nonexponential back extrapolation. Our results are compatible with predictions made using a different analytical approach (Rouzine et al.) and agree well with numerical simulations.     

Fractionation and characterization of biologically-active polysaccharides from Artemisia tripartita

The leaves of Artemisia species have been traditionally used for prevention and treatment of a number of diseases. In this study, five polysaccharide fractions (designated A-I-A-V) were isolated from the leaves of Artemisia tripartita Rydb. by the sequential use of hot-water extraction, ethanol precipitation, ultra-filtration, and chromatography. The homogeneity and average molecular weight of each fraction were determined by high performance size-exclusion chromatography. Sugar composition analysis revealed that Artemisia polysaccharides consisted primarily of xylose, glucose, arabinose, galactose, and galactosamine. Moreover, all fractions contained at least 3.4% sulfate, and fractions A-II-A-V contained an arabinogalactan type II structure. All fractions exhibited macrophage-activating activity, enhancing production of intracellular reactive oxygen species and release of nitric oxide, interleukin 6, interleukin 10, tumor necrosis factor alpha, and monocyte chemotactic protein 1. In addition, all fractions exhibited scavenging activity for reactive oxygen species generated enzymatically or produced extracellularly by human neutrophils. Finally, fractions A-I and A-V exhibited complement-fixing activity. Taken together, our results provide a molecular basis to explain at least part of the beneficial therapeutic effects of Artemisia extracts, and suggest the possibility of using Artemisia polysaccharides as an immunotherapeutic adjuvant.     

<Emphasis Type="Italic">Myzostoma fuscomaculatum</Emphasis> (Myzostomida), a new myzostome species from False Bay,South Africa

A new myzostome species, described here as Myzostoma fuscomaculatum n. sp. was collected on Tropiometra carinata in False Bay (South Africa), during a survey of symbionts associated with comatulid crinoid species. M. fuscomaculatum n. sp. occurred only on T. carinata and not on the more common crinoid, Comanthus wahlbergi. It infested 61.7% of the 120 host specimens collected, of which 64.9% (48 specimens) hosted more than one individual (maximum of 32). M. fuscomaculatum n. sp. was always located on the host’s arms and pinnules and was cryptically coloured, closely matching the colour pattern of the host. This is the first record of myzostomes from the cool temperate waters of South Africa’s Atlantic coast. The new species is morphologically close to M. gopalai Subramaniam, 1938, collected on T. encrinus in Madras Harbour. M. fuscomaculatum n. sp. differs from M. gopalai in lacking marginal cirri at the adult stage, the presence of three pairs of digestive diverticula, by the position of its lateral organs and by the shape of the manubrium. Molecular phylogenetic analyses based on 18S and 16S rDNA placed M. fuscomaculatum n. sp. into a clade including Hypomyzostoma, Myzostoma and Mesomyzostoma species. Handling editor: K. Martens Déborah Lanterbecq and Tessa Hempson contributed equally to this work.     

A new view of radiation-induced cancer: integrating short- and long-term processes. Part II: second cancer risk estimation

As the number of cancer survivors grows, prediction of radiotherapy-induced second cancer risks becomes increasingly important. Because the latency period for solid tumors is long, the risks of recently introduced radiotherapy protocols are not yet directly measurable. In the accompanying article, we presented a new biologically based mathematical model, which, in principle, can estimate second cancer risks for any protocol. The novelty of the model is that it integrates, into a single formalism, mechanistic analyses of pre-malignant cell dynamics on two different time scales: short-term during radiotherapy and recovery; long-term during the entire life span. Here, we apply the model to nine solid cancer types (stomach, lung, colon, rectal, pancreatic, bladder, breast, central nervous system, and thyroid) using data on radiotherapy-induced second malignancies, on Japanese atomic bomb survivors, and on background US cancer incidence. Potentially, the model can be incorporated into radiotherapy treatment planning algorithms, adding second cancer risk as an optimization criterion.     

Expression of defence-related peroxidases Prx7 and Prx8 during abiotic stresses in barley roots

The expression of defence-related peroxidases Prx7 and Prx8 in barley roots grown under selected abiotic stress conditions (toxic metals: Cd, Al, Co, Cu, Hg; drought, salinity, extreme temperatures: heat, cold) and compounds activating (2,4-D) or inhibiting (SHAM) POD activity as well as H₂O₂ and H₂O₂ scavenger (DTT) was characterized. Strong Cd concentration dependent expression of Prx8 peroxidase gene was observed, which correlated with root growth inhibition induced by Cd- and some other stress factors (heavy metals, heat and salinity). Application of H₂O₂ did not cause changes in expression of Prx8, but H₂O₂ scavenger (DTT) as well as the inhibitor (SHAM) and the activator (2,4-D) of PODs induced increase in Prx8 expression. Our results demonstrate that root growth inhibition during any disturbance of active oxygen species (AOS) in root tissue is correlated with up-regulation of Prx8 gene expression in barley roots.     

Records of the gadoid fish <Emphasis Type="Italic">Arctogadus glacialis</Emphasis> (Peters, 1874) in the European Arctic

The Arctogadus glacialis is endemic to the Arctic Ocean and its apparently disjunct circumpolar distribution range from the Siberian coast through the Chukchi Sea and the Canadian Arctic to the shelf off NE Greenland. Records of A. glacialis are scarce in the European Arctic and here we present all available and reliable records of the species in the area. Altogether, 296 specimens of A. glacialis are reported from 53 positions in the European Arctic during the period 1976–2008. The specimens were registered off Iceland and the Jan Mayen Island, northwest and northeast of Svalbard, northeast in the Barents Sea, and south and east off Franz Josef Land. The additional records show that A. glacialis display a circumpolar and more continuous distribution than described before. In the European Arctic, A. glacialis has been caught at 155–741 m depth with the highest abundance at 300–400 m. We therefore suggest that A. glacialis is more associated to the continental shelves surrounding the Arctic Ocean than previously thought. The length–weight relation of A. glacialis is similar across the European Arctic.