Simple determination of capecitabine and its metabolites by liquid chromatography with ultraviolet detection in a single injection

Capecitabine (N4-pentoxycarbonyl-5'-deoxy-5-fluorocytidine, Xeloda), a prodrug of 5-fluorouracil (5-FU), is an oral tumor-selective fluoropyrimidine carbamate approved in the treatment of colorectal and breast cancer. It has a preferential activation to 5-FU by thymidine phosphorilase (TP) in target tumor tissues through a series of three metabolic steps minimizing the exposure of normal tissues to 5-FU. It offers the potential of less gastrointestinal toxicity and advantages in terms of convenience and quality of life for the patient, in addition to cost-effectiveness as compared with intravenous 5-FU chemotherapy. We developed a high performance liquid chromatography assay for the determination of plasma capecitabine and its nucleoside metabolite concentrations and 5-FU catabolite dihydro-5-fluorouracil in a single step extraction and a single HPLC injection. The retention times of dihydro-5-fluorouracil, 5-FU, 5'-deoxy-5-fluorouridine (5'-DFUR) and capecitabine were 3.6, 4.4, 11.4 and 20.4 min, respectively and the internal standard retention times were 8.7 and 12.2 min for 5-bromouracil (5-BU) and tegafur, respectively. The limit of detection was 0.01 microg/ml for capecitabine and its nucleoside metabolites and the limit of quantification was 0.025 microg/ml. Extraction efficiency was >80% with a single solvent mixture extraction step for all analytes of interest. The assay had good precision, the within-day and between-day standard deviation of the mean (R.S.D.) being <10% in the linear range 0.025-10 microg/ml. The authors conclude that the method described here is ideally suited for the therapeutic monitoring of capecitabine and its metabolites.     

Admixture facilitates adaptation from standing variation in the European aspen (Populus tremula L.), a widespread forest tree

Adaptation to new environments can start from new mutations or from standing variation already present in natural populations. Whether admixture constrains or facilitates adaptation from standing variation is largely unknown, especially in ecological keystone or foundation species. We examined patterns of neutral and adaptive population divergence in Populus tremula L., a widespread forest tree, using mapped molecular genetic markers. We detected the genetic signature of postglacial admixture between a Western and an Eastern lineage of P. tremula in Scandinavia, an area suspected to represent a zone of postglacial contact for many species of animals and plants. Stringent divergence‐based neutrality tests provided clear indications for locally varying selection at the European scale. Six of 12 polymorphisms under selection were located less than 1 kb away from the nearest gene predicted by the Populus trichocarpa genome sequence. Few of these loci exhibited a signature of ‘selective sweeps’ in diversity‐based tests, which is to be expected if adaptation occurs primarily from standing variation. In Scandinavia, admixture explained genomic patterns of ancestry and the nature of clinal variation and strength of selection for bud set, a phenological trait of great adaptive significance in temperate trees, measured in a common garden trial. Our data provide a hitherto missing direct link between past range shifts because of climatic oscillations, and levels of standing variation currently available for selection and adaptation in a terrestrial foundation species.     

Phylogenetic similarity and structure of Agaricomycotina communities across a forested landscape

The Agaricomycotina are a phylogenetically diverse group of fungi that includes both saprotrophic and mycorrhizal species, and that form species – rich communities in forest ecosystems. Most species are infrequently observed, and this hampers assessment of the role that environmental heterogeneity plays in determining local community composition and in driving β‐diversity. We used a combination of phenetic (TRFLP) and phylogenetic approaches [Unifrac and Net Relatedness Index (NRI)] to examine the compositional and phylogenetic similarity of Agaricomycotina communities in forest floor and surface soil of three widely distributed temperate upland forest ecosystems (one, xeric oak – dominated and two, mesic sugar maple dominated). Generally, forest floor and soil communities had similar phylogenetic diversity, but there was little overlap of species or evolutionary lineages between these two horizons. Forest floor communities were dominated by saprotrophic species, and were compositionally and phylogenetically similar in all three ecosystems. Mycorrhizal species represented 30% to 90% of soil community diversity, and these communities differed compositionally and phylogenetically between ecosystems. Estimates of NRI revealed significant phylogenetic clustering in both the forest floor and soil communities of only the xeric oak‐dominated forest ecosystem, and may indicate that this ecosystem acts as a habitat filter. Our results suggest that environmental heterogeneity strongly influences the phylogenetic β‐diversity of soil inhabiting Agaricomycotina communities, but has only a small influence on forest floor β‐diversity. Moreover, our results suggest that the strength of community assembly processes, such as habitat filtering, may differ between temperate forest ecosystems.     

WWOX protein expression in normal human tissues

WWOX is a putative tumor suppressor gene that spans approximately a 1 Mb genomic region and is the site for the second most common chromosomal fragile site, FRA16D at 16q23. Various studies have focused on the expression of WWOX in human cancer mostly at the RNA level, but little is known about the normal pattern of WWOX protein expression in non-neoplastic tissues. In this study, a comprehensive analysis of WWOX protein expression in normal tissues was performed by means of immunohistochemistry utilizing a very specific anti-WWOX polyclonal antibody. We analyzed tissue cores of human samples representing more than 30 organs, using various tissue microarray (TMA) slides. Due to the potential role of WWOX in sex-steroid metabolism, whole sections from hormonally regulated organs like breast, ovaries, testes and prostate were also analyzed. The results from our study indicate that WWOX is preferentially highly expressed in secretory epithelial cells of reproductive, endocrine and exocrine organs, as well as in ductal epithelial cells from specific segments of the urinary system. Interestingly, we also observed significant WWOX protein expression in various cell types of neural origin including neurons, ependymal cells and astrocytes. No expression of WWOX was detected in adipose, connective, and lymphoid tissues, myelinized structures and blood vessels. By better defining the topographic distribution of WWOX in normal tissues this study provides some insight on the potential physiological role of this novel protein.     

Experimental soil warming effects on CO2 and CH4 flux from a low elevation spruce–fir forest soil in Maine, USA

The effect of soil warming on CO₂ and CH₄ flux from a spruce–fir forest soil was evaluated at the Howland Integrated Forest Study site in Maine, USA from 1993 to 1995. Elevated soil temperatures (～5 °C) were maintained during the snow-free season (May – November) in replicated 15 × 15-m plots using electric cables buried 1–2 cm below the soil surface; replicated unheated plots served as the control. CO₂ evolution from the soil surface and soil air CO₂ concentrations both showed clear seasonal trends and significant (P < 0.0001) positive exponential relationships with soil temperature. Soil warming caused a 25–40% increase in CO₂ flux from the heated plots compared to the controls. No significant differences were observed between heated and control plot soil air CO₂ concentrations which we attribute to rapid equilibration with the atmosphere in the O horizon and minimal treatment effects in the B horizon. Methane fluxes were highly variable and showed no consistent trends with treatment.     

Piscivory and diet overlap between two non‐native fishes in southern Chilean streams

Trophic relations among introduced species may induce highly variable and complex effects in communities and ecosystems. However, studies that identify the potential impacts for invaded systems and illuminate mechanisms of coexistence with native species are scarce. Here, we examined trophic relations between two introduced fishes in streams of NW Patagonia, rainbow trout (Oncorhynchus mykiss) and brown trout (Salmo trutta). These species originate from different regions of the Northern Hemisphere but they now coexist as invading species over the world. We used gastric contents and stable isotopes analysis to compare the diets of two size‐classes of these two invaders in three localities of southern Chile. Both species displayed similar ontogenic diet shifts with smaller trout consuming mostly invertebrates and larger trout being more piscivorous and epibenthic feeders. However, piscivory was more prevalent in brown trout than in rainbow trout and highest at the site with the greatest density of native fishes suggesting that the availability of native fishes as trout prey may limit the occurrence of trout piscivory. We found an elevated dietary overlap between the two trout species at larger sizes while at smaller size a higher intraspecific dietary overlap occurred suggesting a potential interference competition among the two fish invaders especially at larger sizes. Our results highlight that the impacts of invading species on non‐native fishes are context specific (i.e. species and ontogenic stages) and thus, difficult to generalize.     

Fungal community composition and function after long‐term exposure of northern forests to elevated atmospheric CO2 and tropospheric O3

The long‐term effects of rising atmospheric carbon dioxide (CO₂) and tropospheric O₃ concentrations on fungal communities in soil are not well understood. Here, we examine fungal community composition and the activities of cellobiohydrolase and N‐acetylglucosaminidase (NAG) after 10 years of exposure to 1.5 times ambient levels of CO₂ and O₃ in aspen and aspen–birch forest ecosystems, and compare these results to earlier studies in the same long‐term experiment. The forest floor community was dominated by saprotrophic fungi, and differed slightly between plant community types, as did NAG activity. Elevated CO₂ and O₃ had small but significant effects on the distribution of fungal genotypes in this horizon, and elevated CO₂ also lead to an increase in the proportion of Sistotrema spp. within the community. Yet, although cellobiohydrolase activity was lower in the forest floor under elevated O₃, it was not affected by elevated CO₂. NAG was also unaffected. The soil community was dominated by ectomycorrhizal species. Both CO₂ and O₃ had a minor effect on the distribution of genotypes; however, phylogenetic analysis indicated that under elevated O₃Cortinarius and Inocybe spp. increased in abundance and Laccaria and Tomentella spp. declined. Although cellobiohydrolase activity in soil was unaffected by either CO₂ or O₃, NAG was higher (～29%) under CO₂ in aspen–birch, but lower (～18%) under aspen. Time series analysis indicated that CO₂ increased cellulolytic enzyme activity during the first 5 years of the experiment, but that the magnitude of this effect diminished over time. NAG activity also showed strong early stimulation by elevated CO₂, but after 10 years this effect is no longer evident. Elevated O₃ appears to have variable stimulatory and repressive effects depending on the soil horizon and time point examined.     

Chromosomal localization of the rat Harvey-ras-1 gene (HRAS) by in situ hybridization.

The rat Harvey-ras-1 protooncogene (HRAS) has previously been assigned to rat chromosome 1. In this study we further refine its localization to region 1q41-->q42 through the use of fluorescent in situ hybridization.