Experimental soil warming effects on CO2 and CH4 flux from a low elevation spruce–fir forest soil in Maine, USA

The effect of soil warming on CO₂ and CH₄ flux from a spruce–fir forest soil was evaluated at the Howland Integrated Forest Study site in Maine, USA from 1993 to 1995. Elevated soil temperatures (～5 °C) were maintained during the snow-free season (May – November) in replicated 15 × 15-m plots using electric cables buried 1–2 cm below the soil surface; replicated unheated plots served as the control. CO₂ evolution from the soil surface and soil air CO₂ concentrations both showed clear seasonal trends and significant (P < 0.0001) positive exponential relationships with soil temperature. Soil warming caused a 25–40% increase in CO₂ flux from the heated plots compared to the controls. No significant differences were observed between heated and control plot soil air CO₂ concentrations which we attribute to rapid equilibration with the atmosphere in the O horizon and minimal treatment effects in the B horizon. Methane fluxes were highly variable and showed no consistent trends with treatment.     

Intensive measurement of nitrous oxide emissions from a corn–soybean–wheat rotation under two contrasting management systems over 5 years

No‐tillage (NT), a practice that has been shown to increase carbon sequestration in soils, has resulted in contradictory effects on nitrous oxide (N₂O) emissions. Moreover, it is not clear how mitigation practices for N₂O emission reduction, such as applying nitrogen (N) fertilizer according to soil N reserves and matching the time of application to crop uptake, interact with NT practices. N₂O fluxes from two management systems [conventional (CP), and best management practices: NT + reduced fertilizer (BMP)] applied to a corn (Zea mays L.), soybean (Glycine max L.), winter‐wheat (Triticum aestivum L.) rotation in Ontario, Canada, were measured from January 2000 to April 2005, using a micrometeorological method. The superimposition of interannual variability of weather and management resulted in mean monthly N₂O fluxes ranging from − 1.9 to 61.3 g N ha⁻¹ day⁻¹. Mean annual N₂O emissions over the 5‐year period decreased significantly by 0.79 from 2.19 kg N ha⁻¹ for CP to 1.41 kg N ha⁻¹ for BMP. Growing season (May–October) N₂O emissions were reduced on average by 0.16 kg N ha⁻¹ (20% of total reduction), and this decrease only occurred in the corn year of the rotation. Nongrowing season (November–April) emissions, comprised between 30% and 90% of the annual emissions, mostly due to increased N₂O fluxes during soil thawing. These emissions were well correlated (r²= 0.90) to the accumulated degree‐hours below 0 °C at 5 cm depth, a measure of duration and intensity of soil freezing. Soil management in BMP (NT) significantly reduced N₂O emissions during thaw (80% of total reduction) by reducing soil freezing due to the insulating effects of the larger snow cover plus corn and wheat residue during winter. In conclusion, significant reductions in net greenhouse gas emissions can be obtained when NT is combined with a strategy that matches N application rate and timing to crop needs.     

The Pax-homeobox gene eyegone is involved in the subdivision of the thorax of Drosophila

The eyegone (eyg) gene is known to be involved in the development of the eye structures of Drosophila. We show that eyg and its related gene, twin of eyegone (toe), are also expressed in part of the anterior compartment of the adult mesothorax (notum). We report experiments concerning the role of these genes in the notum. In the absence of eyg function the anterior-central region does not develop, whereas ectopic activity of either eyg or toe induces the formation of the anterior-central pattern in the posterior or lateral region of the notum. These results demonstrate that eyg and toe play a role in the genetic subdivision of the notum, although the experiments indicate that eyg exerts the principal function. However, by itself the Eyg product cannot induce the formation of notum patterns; its thoracic function requires co-expression with the Iroquois (Iro) genes. We show that the restriction of eyg activity to the anterior-central region of the wing disc is achieved by the antagonistic regulatory activities of the Iro and pnr genes, which promote eyg expression, and those of the Hh and Dpp pathways, which act as repressors. We argue that eyg is a subordinate gene of the Iro genes, and that pnr mediates their thoracic patterning function. The activity of eyg gives rise to a new notum subdivision that acts upon the pre-extant one generated by the Iro genes and pnr. As a result the notum becomes subdivided into four distinct genetic domains.     

Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates

Background  

Two major identifiable sources of variation in data derived from the Serial Analysis of Gene Expression (SAGE) are within-library sampling variability and between-library heterogeneity within a group. Most published methods for identifying differential expression focus on just the sampling variability. In recent work, the problem of assessing differential expression between two groups of SAGE libraries has been addressed by introducing a beta-binomial hierarchical model that explicitly deals with both of the above sources of variation. This model leads to a test statistic analogous to a weighted two-sample t-test. When the number of groups involved is more than two, however, a more general approach is needed.     

Simple determination of capecitabine and its metabolites by liquid chromatography with ultraviolet detection in a single injection

Capecitabine (N4-pentoxycarbonyl-5'-deoxy-5-fluorocytidine, Xeloda), a prodrug of 5-fluorouracil (5-FU), is an oral tumor-selective fluoropyrimidine carbamate approved in the treatment of colorectal and breast cancer. It has a preferential activation to 5-FU by thymidine phosphorilase (TP) in target tumor tissues through a series of three metabolic steps minimizing the exposure of normal tissues to 5-FU. It offers the potential of less gastrointestinal toxicity and advantages in terms of convenience and quality of life for the patient, in addition to cost-effectiveness as compared with intravenous 5-FU chemotherapy. We developed a high performance liquid chromatography assay for the determination of plasma capecitabine and its nucleoside metabolite concentrations and 5-FU catabolite dihydro-5-fluorouracil in a single step extraction and a single HPLC injection. The retention times of dihydro-5-fluorouracil, 5-FU, 5'-deoxy-5-fluorouridine (5'-DFUR) and capecitabine were 3.6, 4.4, 11.4 and 20.4 min, respectively and the internal standard retention times were 8.7 and 12.2 min for 5-bromouracil (5-BU) and tegafur, respectively. The limit of detection was 0.01 microg/ml for capecitabine and its nucleoside metabolites and the limit of quantification was 0.025 microg/ml. Extraction efficiency was >80% with a single solvent mixture extraction step for all analytes of interest. The assay had good precision, the within-day and between-day standard deviation of the mean (R.S.D.) being <10% in the linear range 0.025-10 microg/ml. The authors conclude that the method described here is ideally suited for the therapeutic monitoring of capecitabine and its metabolites.     

Why are birds' eggs colourful? Eggshell pigments co‐vary with life‐history and nesting ecology among British breeding non‐passerine birds

The colourful appearance of bird eggshells has long fascinated biologists and considerable research effort has focused on the structure and biochemistry of the avian eggshell matrix. The presence of tetrapyrrole pigments was identified nearly a century ago. Surprisingly, how the concentrations of avian eggshell pigments vary among related species, and whether this variability is associated with either eggshell appearance and/or species life‐history traits, remains poorly understood. We quantified the concentrations of the two key eggshell pigments, protoporphyrin IX and biliverdin, from a diverse sample of eggshells stored at the Natural History Museum, Tring, UK. We explicitly tested how these two pigments are associated with physical measures of eggshell coloration and whether the pigment concentrations and colour diversity co‐vary with phylogenetic affiliations among species. We also tested a series of comparative hypotheses regarding the association between the concentrations of the two pigments and specific life‐history and breeding ecology traits. Across species, the average concentrations of protoporphyrin and biliverdin were positively correlated, and both strongly co‐varied with phylogenetic relatedness. Controlling for phylogeny, protoporphyrin concentration was associated with a higher likelihood of cavity nesting and ground nesting, whereas biliverdin concentration was associated with a higher likelihood of non‐cavity nesting habit and bi‐parental provisioning. Although unlikely to be explained by a single function, the breeding ecology and life history‐dependence of eggshell pigment concentrations in these comparative analyses implies that related species share pigment strategies, and that those strategies relate to broad adaptive roles in the evolution of variation in avian eggshell coloration and its underlying mechanisms. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 106 , 657–672.     

The interplay of dispersal limitation,rivers, and historical events shapes the genetic structure of an Amazonian frog

Disentangling the impact of landscape features such as rivers and historical events on dispersal is a challenging but necessary task to gain a comprehensive picture of the evolution of diverse biota such as that found in Amazonia. Adenomera andreae, a small, territorial, terrestrial frog species of the Amazonian forest represents a good model for such studies. We combined cytochrome b sequences with 12 microsatellites to investigate the genetic structure at two contrasted spatial scales in French Guiana: along a ～6‐km transect, to evaluate dispersal ability, and between paired bank populations along a ～65‐km stretch of the Approuague river, to test the effect of rivers as barriers to dispersal. We observed significant spatial genetic structure between individuals at a remarkably small geographical scale, and conclude that the species has a restricted dispersal ability that is probably tied to its life‐history traits. Mitochondrial and microsatellite data also indicate a high level of differentiation among populations on opposite banks of the river, and, in some cases, among populations on the same riverbank. These results suggest that the observed population structure in A. andreae is the result of restricted dispersal abilities combined with the action of rivers and Quaternary population isolation. Given that Amazonia hosts a great portion of anurans, as well as other small vertebrates, that display life‐history traits comparable with A. andreae, we argue that our analyses provide new insights into the complex interactions among evolutionary processes shaping Amazonian biodiversity. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 106 , 356–373.     

Piscivory and diet overlap between two non‐native fishes in southern Chilean streams

Trophic relations among introduced species may induce highly variable and complex effects in communities and ecosystems. However, studies that identify the potential impacts for invaded systems and illuminate mechanisms of coexistence with native species are scarce. Here, we examined trophic relations between two introduced fishes in streams of NW Patagonia, rainbow trout (Oncorhynchus mykiss) and brown trout (Salmo trutta). These species originate from different regions of the Northern Hemisphere but they now coexist as invading species over the world. We used gastric contents and stable isotopes analysis to compare the diets of two size‐classes of these two invaders in three localities of southern Chile. Both species displayed similar ontogenic diet shifts with smaller trout consuming mostly invertebrates and larger trout being more piscivorous and epibenthic feeders. However, piscivory was more prevalent in brown trout than in rainbow trout and highest at the site with the greatest density of native fishes suggesting that the availability of native fishes as trout prey may limit the occurrence of trout piscivory. We found an elevated dietary overlap between the two trout species at larger sizes while at smaller size a higher intraspecific dietary overlap occurred suggesting a potential interference competition among the two fish invaders especially at larger sizes. Our results highlight that the impacts of invading species on non‐native fishes are context specific (i.e. species and ontogenic stages) and thus, difficult to generalize.