Climatic stability and genetic divergence in the tropical insular lizard Anolis krugi,the Puerto Rican ‘Lagartijo Jardinero de la Montaña’

Two factors that can lead to geographic structuring in conspecific populations are barriers to dispersal and climatic stability. Populations that occur in different physiographic regions may be restricted to those areas by physical and/or ecological barriers, which may facilitate the formation of phylogeographic clades. Long‐term climatic stability can also promote genetic diversification, because new clades are more likely to evolve in areas that experience lesser climatic shifts. We conducted a phylogeographic study of the Puerto Rican lizard Anolis krugi to assess whether populations of this anole show genetic discontinuities across the species’ range, and if they do, whether these breaks coincide with the boundaries of the five physiographic regions of Puerto Rico. We also assessed whether interpopulation genetic distances in A. krugi are positively correlated with relative climatic stability in the island. Anolis krugi exhibits genetic structuring, but the phylogroups do not correspond to the physiographic regions of Puerto Rico. We used climatic reconstructions of two environmental extremes of the Quaternary period, the present conditions and those during the last glacial maximum (LGM), to quantify the degree of climatic stability between sampling locations. We documented positive correlations between genetic distances and relative climatic stability, although these associations were not significant when corrected for autocorrelation. Principal component analyses indicated the existence of climatic niche differences between some phylogeographic clades of A. krugi. The approach that we employed to assess the relationship between climatic stability and the genetic architecture of A. krugi can also be used to investigate the impact of factors such as the spatial distribution of food sources, parasites, predators or competitors on the genetic landscape of a species.     

Effect of trapping methods on the estimation of alpha diversity of a phlebotomine sandfly assemblage in southern Mexico

The aims of the study were to (a) investigate the effect of trapping methods on alpha diversity; and (b) enhance the knowledge of the sandfly assemblage in the state of Quintana Roo. Field work was undertaken in a tropical forest of southern Mexico from August 2013 to July 2014. Sampling was conducted monthly during three consecutive nights. For each trapping night, 12 different types of trap were operated from 18.00 to 24.00 hours in four transects. Measures of alpha community diversity were based on the quantification of the number of species (Chao 2, Jackknife 2, Clench's equation, Margalef's index) and the community structure, as well as the dominance (Simpson and Berger‐Parker indexes) and evenness (Shannon's entropy index, true diversity of the Jost and Pielou index). With a total sampling effort of 1728 night‐traps, 16 101 phlebotomine sandflies were collected; they represented two genera and 13 species. Diversity estimates of 100% (Chao 2 and Clench's equation) and 85% (Jackknife 2) of potential species in the study area were calculated. Shannon traps and CDC light traps indicated the largest number of species, but only Shannon traps showed the greatest abundance. This inventory of sandflies is an important activity to enhance our knowledge of sandfly assemblages and guilds. The ultimate goal of studying alpha diversity in sandflies would be to have a better understanding of the population dynamics and all complex networks of interactions that may, in turn, be associated with the epidemiology of the disease.     

El Niño Southern Oscillation and climate trends impact reservoir water quality

Low dissolved oxygen concentration in bottom layers of lakes and reservoirs usually indicates low water quality. In lakes, empirical models predicting anoxia are almost entirely based on the decay of plankton biomass, while in reservoirs recent findings suggest a prominent role of streamflow and load of organic carbon. This suggests a potential link between water quality in reservoirs and climate processes affecting streamflow. Here we support this hypothesis presenting evidence that both interannual climate variability and recent climate change, mainly consisting in a significant increase in potential evapotranspiration in the upstream basin, affected the oxygen content in a Mediterranean reservoir (Sau Reservoir, Spain). Using a 44‐year monthly record, we found strong and consistent signatures of El Niño Southern Oscillation in the inflow and reservoir oxygen content. Spectral and wavelet techniques showed that the El Niño, streamflow, and reservoir oxygen content series oscillated in common periods, which coincided with the main El Niño variability modes. An empirical model explaining the annual oxygen content in the reservoir suggested that a decreasing streamflow trend reduced the oxygen content of the reservoir by about 20%, counteracting remediation measures implemented at the basin upstream the reservoir. Our results provide the first quantitative evidence of climate change effects on reservoir water quality using long‐term instrumental data, and indicate that streamflow should be considered as a key variable in assessing climate change impact on reservoir water quality. These results are especially relevant in regions of the world where reservoirs are abundant and most climate models predict a decrease in runoff during the next decades. Both the expected trends and the sensitivity of reservoir water quality to global interannual climate variability should be considered for a correct management of water resources in the present and to design adaptation policies in the future.     

Host shifts and signal divergence: mating signals covary with host use in a complex of specialized plant‐feeding insects

A combination of divergent natural and sexual selection is a powerful cause of speciation. This conjunction of evolutionary forces may often occur when divergence is initiated by ecological differences between populations because local adaptation to new resources can lead to changes in sexual selection. The hypothesis that differences in resource use contribute to the evolution of reproductive isolation by altering the nature of sexual selection predicts that: (1) differences in sexual traits, such as signals and preferences, are an important source of reproductive isolation between species using different resources; (2) there are identifiable sources of selection on sexual traits that differ between species using different resources; and (3) signals vary between populations using different resources to a larger extent than between populations using the same resource at different localities. Testing these predictions requires a group of closely‐related species or populations that specialize on different resources and for which the traits involved in mate choice are known. The Enchenopa binotata species complex of treehoppers (Hemiptera: Membracidae) are host plant specialists in which speciation is associated with shifts to novel host plants. Mating in this complex is preceded by an exchange of vibrational signals transmitted through host plant stems, and the signal traits important for mate choice have been identified. In the E. binotata complex, previous work has supported the first two predictions: (1) signal differences between species are important in mate recognition and (2) host shifts can alter both the trait values favoured by sexual selection and the evolutionary response to that selection. In the present study, we tested the last prediction by conducting a large‐scale study of mating signal variation within and between the 11 species in the complex. We find that differences in host use are strongly associated with differences in signal traits important for mate recognition. This result supports the hypothesis that hosts shifts have led to speciation in this group in part through their influence on divergence in mate communication systems. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 99 , 60–72.     

Niche conservatism and species richness patterns of squamate reptiles in eastern and southern Africa

Niche conservatism has been proposed as a mechanism influencing large‐scale patterns of taxonomic richness. We document the species richness patterns of five monophyletic squamate reptile groups (gekkonids, cordylids‐scincids, lacertids, chameleons and alethinophidian snakes) in eastern and southern Africa, and explore if observed patterns reflect niche conservatism processes. We quantified richness and its relationships with current climatic conditions by gridding species' range maps at 110 × 110 km. Also, dated phylogenies and palaeoclimatic reconstructions, coupled with evidence from the fossil record, were used to approximate the areas and climate characteristics in which each group originated and/or radiated. Mean species richness and geographically corrected confidence intervals in current climate types were calculated for each group in order to establish their climatic preferences. On average, the species richness of older groups (gekkonids, cordylids‐scincids and lacertids) was lower in equatorial climates and higher in arid and temperate conditions, whereas more recent groups (chameleons and alethinophidian snakes) were richer in equatorial and temperate climates and less rich in arid conditions. Across all groups, higher richness was associated with climatic characteristics similar to those prevailing at the time in which each group originated/radiated. The congruence of the current climates where reptile groups are richer and the past climates amidst which those groups originated is consistent with an explanation for their diversity gradients based on niche conservatism.     

Gene Cloning and Biochemical Characterization of an Alcohol Dehydrogenase from Euglena gracilis1

ABSTRACT. Euglena gracilis is a freshwater free‐living organism able to grow with ethanol as carbon source; to facilitate this metabolism several alcohol dehydrogenase (ADH) activities have been detected. We report the gene cloning, over‐expression, and biochemical characterization of a medium‐chain NAD⁺‐dependent ADH from E. gracilis (EgADH). The enzyme's amino acid sequence displayed the highest percentages of similarity and identity with ADHs of bacteria and fungi. In the predicted three‐dimensional model, all the residues involved in Zn²⁺, cofactor, and substrate binding were conserved. A conventional signal peptide for import into mitochondria could not be clearly identified. The protein of 37 kDa was over‐expressed, purified to homogeneity, and kinetically characterized. The enzyme's optimal pH was 7.0 for ethanol oxidation displaying a V_m of 11.7±3.6 U/mg protein and a K_m of 3.2±0.7 mM for this substrate. Isopropanol and isopentanol were also utilized, although with less efficiency. It showed specificity for NAD⁺ with a K_m value of 0.39±0.1 mM and Mg²⁺ or Zn²⁺ were essential for activity. The recombinant EgADH reported here may help to elucidate the roles that different ADHs have on the metabolism of short‐ and long‐chain alcohols in this microorganism.     

Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis

Twenty‐three isolates of the widely distributed marine bacteria Alteromonas macleodii have been analysed by multilocus sequence analysis combined with phylogenetic and multivariate statistical analyses. The strains originated from the Pacific Ocean, Mediterranean Sea, English Channel, Black Sea and Thailand. Using the nucleotide sequences of nine loci for each of the 23 isolates, a robust identification was achieved of different clades within the single species. Strains generally clustered with the depth in the water column from which the isolate originated. Strains also showed more recombination with isolates from the same vicinity, suggesting that genetic exchange plays a role in diversification of planktonic marine prokaryotes. This study thus shows for the first time for a large set of isolates of a species of planktonic marine prokaryotes that multilocus sequence analysis overcomes the problems associated with the analysis of individual marker genes or presence of extensive recombination events. It can thus achieve intraspecific identification to the level of genotypes and, by comparison with relevant environmental data, ecotypes.     

Implications of soil organic carbon and the biogeochemistry of iron and aluminum on soil phosphorus distribution in flooded forests of the lower Orinoco River,Venezuela

Relationships among soil phosphorus distribution, soil organic carbon and biogeochemistry of iron and aluminum were studied along a flooded forest gradient of the Mapire river, Venezuela. Soil samples were collected during the dry season in three zones subjected to different flooding intensity: MAX inundated 8 months per year, MED inundated 5 months per year, and MIN inundated 2 months per year. Total labile phosphorus (resin + bicarbonate extractable fractions) was significantly higher in MIN than in MAX. The longer non-flooding period in MIN probably allowed a higher accumulation of microbial biomass in soils of this zone and consequently a greater release of the bicarbonate organic fraction. The moderately labile phosphorus fraction associated with the chemisorbed phosphorus on amorphous and some crystalline aluminum and iron was significantly lower in MAX than in MIN following the same tendency observed for crystalline iron oxides. This result allowed us to hypothesize that the combined effect of a long flood period and a high soil organic carbon content in the MAX, could be appropriate conditions for microbial reduction of stable forms of iron. The ratio of soil organic carbon to total organic phosphorus decreased from MAX to MIN, indicating higher mineralization of organic phosphorus in MIN. Our results suggests two distinct flood-dependent mechanisms operating for phosphorus release along the gradient. In MAX mineralization process appears to be limited, while microbial mineral dissolution appears to be an important source of phosphorus. In MIN supply of phosphorus is associated with the stability of soil organic matter.