The Challenges of Living in Hypoxic and Hypercapnic Aquatic Environments

Organisms living in coastal waters, and especially estuaries,have long been known to have behavioral or physiological mechanismsthat enable them toexist in water containing low amounts ofoxygen. However, the respiratory consumption of oxygen thatgenerates hypoxia is also responsible for producing significantamounts of carbon dioxide. An elevation of carbon dioxide pressurein water will cause a significant acidosis in most aquatic organisms.Thus, the combination of low oxygen and elevated carbon dioxidethat occurs in estuaries represents a significant environmentalchallenge to organisms living in this habitat. Organisms maymaintain oxygen uptake in declining oxygen conditions by usinga respiratory pigment and/or by making adjustments in the convectiveflow of water and blood past respiratory surfaces (i.e., increasecardiac output and ventilation rate). Severe hypoxia may resultin an organism switching partially or completely to anaerobicbiochemical pathways to sustain metabolic rate. There is alsoevidence to suggest that organisms lower their metabolism duringhypoxic stress. Elevated water CO₂ (hypercapnia) produces anacidosis in the tissues of organisms that breathe it. This acidosismay be wholly or partially compensated (i.e., mechanisms returnpH to pre-exposure levels), or may be uncompensated. Some studieshave examined the effects on organisms of exposure simultaneouslyto hypoxia and hypercapnia. This article reviews some of thespecific adaptations and responses of organisms to low oxygen,to high carbon dioxide, and to the cooccurrence of low oxygenand high carbon dioxide     

The synthesis of long-term ecological research in the context of concurrently developed ecological theory: design of a research strategy for the Upper Rhône River and its floodplain

• 1 Using sites from the Upper Rhône River, France, as an example, the objective of this paper is to identify the essential elements needed to test current ecological theories with previously collected data. Procedures developed may enable other groups to design comparable research strategies for syntheses of long-term studies of ecological systems.
• 2 Because of the high number (more than 200) and turnover of researchers, the long study period (about 17 years), the evolution of research methods and interests, and the diverse systematic groups that were considered (from micro-organisms to birds), the data available for a synthesis were quite heterogeneous. The application of a ‘fuzzy coding’ technique allowed such disparate information to be structured for analysis.
• 3 The habitat templet concept and the patch dynamics concept were selected for analysis with existing data on the Upper Rhône because theories, such as these, that link ecological responses to habitat templets are a focus of current ecological debate and potentially may serve as a general tool for ecologically orientated river management.
• 4 A preliminary trial to structure the existing knowledge, to identify (and manage) gaps in it, and to create and apply the analytical tools in a way that predictions from theory could be tested was an essential element in the design of this project.
• 5 Predictions derived from the theoretical concepts had to match the format of the available information on the Upper Rhône; potential bias was avoided by having a priori predictions developed by previously uninvolved colleagues.
• 6 Synthesis of the long-term study of the Upper Rhône in the context of concurrently developed ecological theory required, at times, an unconventional research strategy. Hence, the generation of hypotheses and methods, the presentation of results, and consequently the discussions in papers of this special issue of Freshwater Biology (Statzner, Resh & Dolédec, 1994) represent an innovative approach to testing ecological theory.

     

Identification of sibling mice species (genus Mus) by a simple immunological test

An immunological test that can be made on living animals is developed to identify M. m. musculus mice from the two other short-tailed mice ( M. spicilegus and M. spretoides ) occurring in Eastern Europe. This test uses fractionated albumin antiserum as an immunological marker and is performed using dot-blot immunoassay. One hundred and twelve animals belonging to the three species and originating from wild-caught mice and from laboratory strains were tested. All the M. m. musculus mice were correctly identified with this test. Owing to its simplicity and reliability, this test will be very useful in field surveys, particularly in the zone of sympatry between M. m. musculus and M. spicilegus .     

Penetration of the Mosquito (Aedes aegypti) Midgut Wall by the Ookinetes of Plasmodium gallinaceum

ABSTRACT We observed Plasmodium gallinaceum ookinetes in both intracellular and intercellular positions in the midgut epithelium of the mosquito Aedes aegypti. After epithelial cell invasion intracellular ookinetes lacked a parasitophorous vacuolar membrane and were surrounded solely by their own pellicle. Thus, the ookinete in the midgut epithelium of the mosquito differs from erythrocytic and hepatic stages in that the parasite in the vertebrate host is surrounded by a vacuole. The midgut epithelial cytoplasm around the apical end of invading ookinetes was replaced by fine granular material deprived of normal organelles. Membranous structure was observed within the fine granular area. Most ookinetes were seen intracellularly on the luminal side and intercellularly on the haemocoel side of the midgut epithelial cells. These observations suggest that the ookinete first enters into the midgut epithelial cell, then exits to the space between the epithelial cells and moves to the basal lamina where the ookinete develops to the oocyst.     

Isolation of Bacteria from the Corallum of Porites lobata (Vaughn) and Its Possible Significance

Bacteria were recovered from loci within skeletal regions ofthe glomerate coral,Porites lobata. The origin of these bacteriais unknown, although areas of discoloration suggest invasionfrom the substratum in the region of basal attachment. Weakenedareas of internal corallum contained from 10⁴ to 10⁵ bacteriaper gram dry weight as determined by plate counts on a peptone-agarmedium. Some of the isolated bacteria were capable of digestingchitin in vitro. This rinding suggested that the mechanism forskeletal weakening might be bacterial breakdown of the organicmatrix. Absence of change from aragonitic to calcitic crystalsfrom a discolored region supported the contention that skeletalweakening was due to the breakdown of organic matrix ratherthan dissolution of carbonate. Results were obtained as part of a survey to determine the numberand distribution of bacteria in some coral reef environments.     

Assessing and conserving groundwater biodiversity: synthesis and perspectives

1. This paper is a synthesis of a special issue on groundwater biodiversity with a focus on obligate subterranean species, the stygobionts. The series of papers constitutes a great leap forward in assessing and understanding biodiversity patterns because of the use of large quantitative data sets obtained over a broad geographic scale. They also represent a conceptual shift, away from a purely taxonomic and phylogenetic focus to the analysis of whole groundwater assemblages.
2. The general patterns emerging for groundwater fauna are: very high levels of endemism, low local diversity relative to regional diversity, a limited number of lineages, occurrence of many relicts, and truncated food webs with very few predators.
3. β-Diversity is at least as important as α-diversity in determining total richness at different scales (aquifer, basin and region) and overall taxa richness increases across spatial scales.
4. Advances in understanding groundwater biodiversity patterns further include identification of several important factors related to geology and hydrology that determine the composition of European stygobiotic assemblages.
5. Important challenges for future research include improving sampling strategies, filling gaps in sampling coverage, intensifying research on theoretical and statistical models, and including functional and genetic diversity components in biodiversity assessments.
6. Strategies are proposed for protecting groundwater biodiversity and an argument is made to integrate biodiversity in groundwater management. Applying principles such as complementarity and flexibility for groundwater biodiversity conservation is a major step toward delineating a reserve network that maximise species representation at the European scale.     

Aptychi microstructure in Late Cretaceous Ancyloceratina (Ammonoidea)

The microstructure of aptychi (bivalved calcareous coverings on lower jaws) of three genera of Late Cretaceous Ancyloceratina, Baculites, Polyptychoceras and Jeletzkytes is described for the first time on the basis of well-preserved and in situ material from the Western Interior of the USA and Hokkaido, Japan. Optical and scanning electron microscope observations of aptychi on polished median and cross-sections reveal some variation in their relative size, shape and microstructure among the three genera. The aptychus of Baculites is composed of two calcitic layers: one with tilted lamellae and the other one with horizontal lamellae, whereas those of Polyptychoceras and Jeletzkytes consist of a thin layer with horizontal lamellae. Comparison with aptychi (e.g. Laevaptychus) of Jurassic Ammonitina shows that the aptychi of Ancyloceratina differ from those of Jurassic Ammonitina in the smaller number of layers and the absence of a sponge-like structure. We propose for the first time growth models for a sponge-like aptychus of Jurassic Ammonitina and the lamellar aptychus of Cretaceous Ancyloceratina. The remarkable microstructural variation of aptychi observed in Mesozoic Ammonoidea is probably related to the diversity of their modes of feeding and the secondary function of the lower jaws as opercula.     

RAPID DETECTION OF GERMINATING BACILLUS CEREUS CELLS USING FLUORESCENT IN SITU HYBRIDIZATION

Methods for the specific detection of Bacillus spores are needed in many situations such as the recognition of food poisoning. This study presents an experimental design in order to find the best combination of germination conditions leading to a rapid and detectable fluorescent in situ hybridization (FISH) signal from Bacillus cereus spores present in pure cultures and milk samples.
B. cereus ATCC 14579 and HER 1414 were incubated in 20 different growth media by using a combination of various germinants such as sugars, amino acids and dipicolinic acid. Also, three different germination factors were tested: incubation temperature, inoculum concentration and a heat shock treatment. Permeabilization procedure and hybridization time were optimized on the best germination condition found. B. cereus -specific FISH probes were validated under the optimized condition and in detection of spiked B. cereus spores in 1% ultra heat-treated milk samples. FISH-labeled cells were detected by using flow cytometry, and the results were confirmed by fluorescence microscopy. The optimal condition allows the detection of B. cereus spores in less than 2 h. Overall, a ninefold reduction in total time for detection was achieved when comparing with previous works. Therefore, the permeabilization and hybridization optimizations mentioned in this study are major improvements for the detection time of B. cereus spores.

PRACTICAL APPLICATIONS

By using the optimized conditions of germination/outgrowth, permeabilization and hybridization, the detection of 10³ cfu/mL of Bacillus cereus spores using fluorescent in situ hybridization is possible within 2 h in milk sample.