A rapid PCR method to discriminate between Tomato yellow leaf curl virus isolates

Tomato yellow leaf curl virus (TYLCV) was recently divided into two different species: Tomato yellow leaf curl virus‐Israel (TYLCV‐Is) and Tomato yellow leaf curl virus‐Sardinia (TYLCV‐Sar). There are no rapid methods by which TYLCV viruses may be assigned to either TYLCV‐Is or TYLCV‐Sar species. In the present work, using an extensive alignment of begomovirus sequences, TYLCV‐specific primers were designed and tested which allow the specific amplification of DNA fragments from any isolate of TYLCV. Also, a primer was designed and tested which allows the specific amplification of TYLCV‐Sar. Furthermore, a combination of these primers was selected to develop a duplex PCR method, which has the potential to detect either TYLCV‐Is or TYLCV‐Sar. The PCR methods were also highly effective with minimal sample preparation and allowed direct amplification of TYLCV from infected leaf extracts. This approach may be used in the laboratory as a tool for rapid, large‐scale diagnostics of TYLCV‐infected samples.     

IMPACTION-BASED SAMPLER FOR DETECTING MALE-SPECIFIC COLIPHAGES IN BIOAEROSOLS

Air quality within and around confined animal housing operations is important from both occupational exposure and environmental quality perspectives. Appropriate sampling equipment should be available so that bioaerosols are adequately characterized in terms of their component microbial populations. In this study the efficacy of a commercially available impaction-based bioaerosol sampler (SAS-100) was evaluated in terms of its ability to detect male-specific coliphages within and around poultry broiler houses. In addition to the manufacturer recommended agar medium, cellulose and cellulose-acetate filter media were also used as the collection surface. The agar medium and the cellulose ester filters provided very high recoveries of phages as compared to the cellulose filter (P<0.05). There was a wide range of recoveries ranging from 0–100% when the cellulose acetate filter was used to detect phages in bioaerosols within and around broiler houses. The results suggest that the sampler is capable of concentrating male-specific coliphages from bioaerosols. However, further studies are still needed to accurately determine the collection efficiencies of viruses.     

A STUDY OF TEXTURE-FLAVOR INTERACTIONS USING FREE-CHOICE PROFILING

Interactions between perceptions of texture and volatile flavors were assessed by free-choice profiling using gelatin desserts as a model product. Gels were prepared with all combinations of 2 levels of gelatin, and 2 concentrations of 2 different flavors. A trained sensory panel profiled each sample for aroma, flavor, and oral and manual texture. Generalized Procrustes Analysis was carried out separately for each sensory modality. The results indicate that while gelatin concentration and flavor type both modified perception of flavor, flavor concentration did not. Gelatin content influenced instrumental, oral, and manual evaluations of texture; however, the type and level of flavoring had little influence on oral perception of texture.     

A morphological phylogeny for four families of amblyceran lice (Phthiraptera: Amblycera: Menoponidae, Boopiidae, Laemobothriidae, Ricinidae)

The suborder Amblycera (Insecta: Phthiraptera) comprises seven recognized families of parasitic lice. Three of these families (the Menoponidae, Laemobothriidae and Ricinidae) are present on a wide range of avian hosts. The four remaining families are restricted to a small section of mammals (the Boopiidae are parasites of Australian and New Guinean marsupials, and the Gyropidae, Trimenoponidae and Abrocomophagidae parasitize South and Central American rodents). This study uses a morphological approach to examine the evolutionary relationships between the genera from four amblyceran families: the Menoponidae, Boopiidae, Laemobothriidae and Ricinidae. Genera are represented by exemplars and a total of 44 louse taxa and one outgroup taxon were included. A cladistic analysis of 147 unordered characters recovered six equally parsimonious trees. Bootstrap, jackknife and Bremer support analyses were undertaken to assess the level of support for each resolved node in the strict consensus topology. Strong support was found for deep branch relationships between the families and in some cases for supra-generic groupings within families. The clades present in the strict consensus tree are discussed with reference to supra-generic and interfamily relationships, character choice, morphological convergence and host distribution. This study is the first phylogeny presented solely for amblyceran genera.  © 2003 The Linnean Society of London, Zoological Journal of the Linnean Society , 2003, 138 , 39–82.     

Contribution to the taxonomy and ecology of the Azorean benthic marine algae

Algal zonation patterns were studied in two sites (Caloura, south coast and Ribeirinha, north coast) of the island of Sao Miguel, Azores. At each site two stations were studied and the transects revealed the occurrence of two distinct and well established algal zones. In the first zone, daily immersed and emersed by the tide, the algae were growing in a dense and short tangle forming a mat, referred to as algal turf. In the second zone, which was wet most of the time, the algae were larger and frondose. A list of the species of benthic marine algae occurring on the algal turf of each station is given. Of the total of 47 species found, eight are new for the Azores and another 13 species are recorded for the first time for Sao Miguel. Gigartina acicularis (Roth) Lamouroux and articulate coralline algae (Corallina oficinalis Linnaeus and Jania spp.) were the more common species. Seasonal variation of the algal turf was studied and related to mean monthly values of air and sea water temperatures, insolation and hours of light. The zonation patterns and composition of algal species were compared with those from other open rocky shores.     

Factors determining length distribution and abundance of the European eel, Anguilla anguilla, in the River Mondego (Portugal)

1. The distribution and abundance of the European eel, Anguilla anguilla, were investigated in the Mondego River, a strongly modified river in central Portugal. Nine freshwater sites, located below the first impassable obstacle to eel migration, were surveyed for 2 years. The study was conducted monthly during the first year and seasonally during the second year. Fish were caught by electric fishing and, physical and biotic variables potentially influencing eel length distribution and abundance were determined at each sampling session. 2. Canonical correspondence analysis (CCA) was used to explain the relationships between abiotic and biotic habitat variables, and eel length distribution. Spatial variation was strongly associated with distance from the sea, number of obstacles, river width and percentage of instream cover. Depth, river flow, water temperature and cannibalism had weaker effects on the longitudinal distribution, but contributed as explanatory variables for the model. The influence of spatial variables outweighed the importance of temporal variables as predictors in this model. 3. Length distribution changed in space from a dominance of small eels (<100 mm) closer to the sea to larger eels (≥250 mm) in the upper reaches of the river. The smallest length class (eels <100 mm) was strongly associated with wider stretches where instream cover, mainly composed of aquatic submerged macrophytes, was abundant (>75% area coverage). On the contrary, larger eels (≥250 mm) preferred deeper stretches with stronger river flow and less instream cover. 4. The effect of biotic interactions with conspecifics as well as with the non‐native red swamp crayfish Procambarus clarkii, in sites with poor instream cover, modified this general pattern of distribution leading to fewer eels <100 mm at some sites closer to the sea. Therefore, despite the ubiquity and plasticity shown by this species, there were clear ontogenetic variations in habitat use such that the first two canonical axes of a CCA accounted for 58.4% of the spatial variability in size structure.