Development and mapping of a public reference set of SSR markers in Lolium perenne L.

We report on the characterization and mapping of 76 simple sequence repeat (SSR) markers for Lolium perenne. These markers are publicly available or obtained either from genomic libraries enriched for SSR motifs or L. perenne expressed sequence tag (EST) clones. Four L. perenne mapping populations were used to map the SSR markers. A consensus linkage map of the four mapping populations containing 65 of the SSR markers is presented, together with primer information and a quality score indicating the usefulness of the SSR marker in different populations. The SSR markers identified all seven L. perenne linkage groups.     

Geochemistry of Persististrombus latus Gmelin from the Pleistocene Iberian Mediterranean realm

De Torres, T., Ortiz, J.E., Arribas, I., Delgado, A., Julià, R. & Martín‐Rubí, J.A. 2009: Geochemistry of Persististrombus latus Gmelin from the Pleistocene Iberian Mediterranean realm. Lethaia, Vol. 43, pp. 149–163. In this paper the organic and inorganic geochemistry of fossil and extant Persististrombus latus are compared, together with other strombid species (Lentigo lentiginosus, Lobatus gigas, Strombus alatus, Lobatus raninus, Laevistrombus canarium and Tricornis latissimus). Using a large sample of well‐preserved fossil P. latus shells from the Mediterranean realm, we examined the warming period of sea water in the Middle Pleistocene. A mineralogical study of the shells demonstrates the continuous presence of calcite and a complex organic matter distribution, which was well preserved in many cases, thereby making the U/Th dating of strombid shells unreliable. U/Th analysis of coral samples and amino acid racemization dating of pelecypod shells confirmed that P. latus entered the Mediterranean realm in MIS 7 and 5. The oscillations of the δ¹⁸O values reflect annual growth periods and provide a mixing of the first signal record (primary growth) and successive overgrowths. □Amino acid racemization, Mediterranean Sea, Persististrombus latus, shell mineralogy, U/Th, δ¹⁸O.     

Affinities in C3Cyperus lineages (Cyperaceae) revealed using molecular phylogenetic data and carbon isotope analysis

Maximum likelihood and Bayesian analyses of nrDNA (ETS1f) and plastid DNA (rpl32‐trnL, trnH‐psbA) sequence data are presented for ‘C₃Cyperus’ (Cyperaceae). The term ‘C₃Cyperus’ indicates all species of Cyperus s.l. that use C₃ photosynthesis linked with eucyperoid vegetative anatomy. Sampling comprises 77 specimens of 61 different taxa, representing nearly all previously recognized subdivisions of C₃Cyperus and the segregate genera Courtoisina, Kyllingiella and Oxycaryum. According to our results, the Cyperus clade is divided in six well‐supported clades. The first of these clades (clade 1) forms three subclades largely corresponding to Cyperus sections Haspani, Incurvi and Diffusi. Clade 2 comprises the entirely New World C. section Luzuloidei sensu Denton (1978). Clade 3 is a highly diverse clade including two subclades: clade 3a, C. sections Pseudanosporum and Anosporum plus the segregate genera Courtoisina and Oxycaryum; and clade 3b, C. section Fusci. Clade 4 corresponds to C. section Alternifolii and clade 5 to C. section Leucocephali plus the segregate genus Kyllingiella. The sixth clade is a well‐supported monophyletic clade encompassing all C₄Cyperus s.l. species (‘C₄Cyperus’). This study establishes a phylogenetic framework for future studies. © 2011 The Linnean Society of London, Botanical Journal of the Linnean Society, 2011, 167 , 19–46.     

Species-Specific Aggregation Factor in Sponges

An aggregation factor (AF) from the siliceous sponge Suberites domuncula has been isolated and purified by the following steps: Sepharose 2 B gel chromatography, sucrose gradient, Nonidet treatment, Sephadex G-100 gel chromatography and DEAE-Sephadex ion-exchange chromatography. By this procedure the AF was purified 1340-fold with a 63% yield nearly to homogeneity. The AF is originally associated with large particles, characterized by a sedimentation of 2200 S. These particles have been visualized electron microscopically; they are characterized by a filament-like shape of a length of 3400 Å and a cross-sectional diameter of 230 Å.
The purified, low-molecular weight AF has a buoyant density of 1.38 g/cm³ and an absorbance maximum at 282 nm. The isoelectric pH is approximately 5.75. The molecular weight of the AF has been determined to be 55,000. Chemical analysis revealed that AF consists mainly of protein.
The reaggregation process of Suberites cells to large aggregates (>1000 μm), mediated by Suberites AF, is strongly dependent on pH, ionic strength and the presence of calcium ions, and independent of incubation temperature between 0°C and 20°C. Aggregation can be inhibited by trypsin, D-glucosamine and dodecyl sulphate.
The Suberites AF is species-specific if tested in a system containing cells from the siliceous sponge Geodia cydonium .     

Effects of long-term salt stress on antioxidant defence systems, leaf water relations and chloroplast ultrastructure of potato plants

The effect of long-term (30 days) NaCl treatments (100 mM and 200 mM) on the activity of some antioxidant enzymes, level of antioxidant metabolites, water relations and chloroplast ultrastructure, was studied in potato (Solanum tuberosum cv. Désirée) leaves. Salt stress negatively affected relative water content, leaf stomatal conductance and transpiration rate. In treated plants, proline was enhanced, but there was a significant decrease in ascorbate and proteins. Total superoxide dismutase activity was increased. The isozyme patterns detected in native gels from salt-irrigated plants were not changed although all the isoforms appeared more heavily stained due to higher activity. In contrast, at both levels of NaCl, catalase activity decreased and ascorbate peroxidase activity showed no significant change in comparison with an untreated control. At ultrastructural level, only thylakoid swelling and a decrease in the amount of grana stacking was observed in treated plants. The overall behaviour of the antioxidant enzymes suggests an increase of cellular H₂O₂ that would contribute to the oxidative stress of potato plants, but which may be alleviated somewhat by the enhanced levels of proline.     

Analysis of Proteins Binding to the ITAM Motif of the β-Subunit of the High-Affinity Receptor for IgE (FcεRI)

Aggregation of the multichain (α β γ₂) high-affinity IgE receptor (Fcε RI) initiates a signaling cascade that results in the release of allergic mediators. The cytoplasmic tails of the Fcε RI-β and -γ subunits contain immunoreceptor tyrosine-based activation motifs (ITAMs). Phosphorylation of the γ ITAM mediates activation of Syk kinase and is sufficient for triggering the responses induced by Fcε RI crosslinking. Phosphorylation of the β ITAM is insufficient to mediate cell activation. The rat β ITAM contains three tyrosines (Tyr²¹⁸, Tyr²²⁴, and Tyr²²⁸) with an intermediate noncanonical tyrosine. Synthetic peptides based on the ITAM of the Fcε RI-β subunit were used to investigate the role of each phosphotyrosine in the binding of signaling proteins to this motif. Among the proteins that bind to phosphorylated β ITAM are Syk, Grb2, Shc, SHIP, and SHP-1, and binding does not depend on previous cell activation. Nonphosphorylated peptides do not bind these proteins. Syk binding to β -peptides is dependent on the number and position of phosphotyrosines in the ITAM. Phosphorylation of Tyr²¹⁸ seems to be most important for Syk binding. Recruitment of Syk and other signaling proteins to the β -subunit might be important for its amplifier role.     

A set of polymorphic EST‐derived markers for Picea species

A pooled DNA method was used to produce fully informative EST (expressed sequence tag)‐derived markers for the Picea genus. Nine markers were produced from 10 cDNA identified as candidates for cold tolerance or embryogenesis. Indels and SNPs (single nucleotide polymorphisms) were characterized from sequences obtained from pools of 10 individuals for each of the three species: Picea glauca (white spruce), Picea mariana (black spruce) and Picea abies (Norway spruce). Indels were present in 28% of the sequences and SNPs with a frequency greater than 10% were present on average in 1.2% of the positions.     

Organic matter availability structures microbial biomass and activity in a Mediterranean stream

1. We compared microbial biomass (bacteria, fungi, algae) and the activity of extracellular enzymes used in the decomposition of organic matter (OM) among different benthic substrata (leaves, coarse and fine substrata) over one hydrological year in a Mediterranean stream.
2. Microbial heterotrophic biomass (bacteria plus fungi) was generally higher than autotrophic biomass (algae), except during short periods of high light availability in the spring and winter. During these periods, sources of OM shifted towards autochthonous sources derived mainly from algae, which was demonstrated by high algal biomass and peptidase activity in benthic communities.
3. Heterotrophic activity peaked in the autumn. Bacterial and fungal biomass increased with the decomposition of cellulose and hemicellulose compounds from leaf material. Later, lignin decomposition was stimulated in fine (sand, gravel) and coarse (rocks, boulders and cobbles) substrata by the accumulation of fine detritus.
4. The Mediterranean summer drought provoked an earlier leaf fall. The resumption of the water flow caused the weathering of riparian soils and subsequently a large increase in dissolved organic carbon and nitrate, which led to growth of bacteria and fungi.     

Seed morphology of Linaria species from eastern Spain: identification of species and taxonomic implications

Seed morphology of 15 taxa of Linaria from eastern Spain has been studied using stereoscopic and scanning electron microscopy. Four different morphological types are described according to features of the seed-coat surface. The type that includes winged seeded taxa is divided into three subtypes. Seed morphology of each type and subtype is described, compared, illustrated and discussed according to its taxonomic and biological implications. A key to identify the different species or groups of species is also supplied. 2001 The Linnean Society of London