Activation of transposable elements and insertional polymorphism in Opuntia offspring as assessed by inter-retrotransposon amplified polymorphism markers

Activation of retrotransposon is a pivotal factor in the genesis of genetic polymorphism. Retrotransposon-based molecular markers are excellent tools for detecting genetic diversity and genomic changes associated with their activity. The objective of this study was to use IRAP markers to detect integration events of retrotransposon in Opuntia, and to compare IRAP and ISSR polymorphisms. To achieve these aims, five IRAP and five ISSR markers were analyzed on three varieties and their progenies. All IRAP primers showed an increase in the percentage of polymorphism, number of total bands, and polymorphic bands in the seedlings compared to their mother plants; that is, the offspring showed 13, 24 and 27 more bands than the mother plants from Tobarito, Montesa and Copena varieties, respectively. Conversely, sexual reproduction did not proportionally affect the variation in the number of ISSR bands, and neither did polymorphisms between mother plants and their offspring. Cluster and multivariate analyses based on IRAP and ISSR data revealed a clear separation between varieties, and there was no overlapping between seedlings of different varieties. The activation of retrotransposons in seedlings of opuntia with variable frequencies was evidenced. The presence of insertion and active retrotransposons may help to undertake studies on genetic diversity and evolution of Opuntia.     

Plant traits mediate effects of predators across pepper (Capsicum annuum) varieties

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Chemical signals left by predators are a potential source of information about the risk of predation, and small mammals are known to take them into account when making decisions. We investigated whether wood mice (Apodemus sylvaticus) are more likely to avoid the faeces of resident predators (red fox Vulpes vulpes and common genet Genetta genetta) vs. a novel predator (European pine marten Martes martes). Odour recognition would increase perceived predation risk and reduce food intake by individual mice. Wood mice response to predators was analysed by live‐trapping using two untreated controls (baited/non‐baited) and traps experimentally manipulated with three predator treatments (faeces of red fox, common genet or pine marten). Traps were baited with 4 g of toasted corn, and food intake by wood mice was determined as the amount of bait remaining in each trap. We found that traps treated with faeces of resident predators were the most avoided, and the number of captures in traps treated with pine marten faeces was similar to the control‐baited traps. The variation found in food intake was explained by the interaction between the types of treatment and breeding condition. Food intake was similar in control‐baited traps and in traps with faeces of pine marten, but when predation risk by resident predators (red fox and common genet) was simulated, breeders reduced food intake significantly as compared to non‐breeders. These results indicate that predator recognition and feeding behaviour under predation risk depend on individual factors and the balance of costs‐benefits in each particular predation risk situation at a given place and time.     

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Ethical discussions around ancient DNA (aDNA) research predate the technological breakthroughs that led to the accelerated generation of ancient genomic data, revealing a long-due need to address these aspects in the field. Given the diverse conflicts that genomics has raised towards the communities associated with the Non-living Human Ancestors under study, it has been suggested that the ethical and legal implications of genetically studying present-day and ancient human populations should be considered case-by-case. Nevertheless, the discussions have focused on US and European perspectives. To contribute from a local and Latin American position to the problem, we present the history of consensus and disagreement of the relationships between scientists and Indigenous communities of the Atlantic coast of the central Argentinian Patagonia. We describe how these relationships resulted in the approval of a groundbreaking provincial law that acknowledges the Indigenous community's right to be involved in decision-making concerning their Ancestors. In addition, we emphasize how these established relationships allowed the development of aDNA studies. With this background, we address the main ethical concerns of genomic studies of Ancestors identified in the reference literature and commit to applying some of the recommendations suggested in those ethical guidelines. Then, we reflect on possible negative consequences of ongoing research and propose some suggestions based on personal experiences that will contribute to moving the ethical field towards a more contextualized science with a local perspective.     

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